in ?
cyanobase » Prochlorococcus marinus str. MIT 9123

Prochlorococcus marinus str. MIT 9123

Summary

? | +/- | Top
Data source name GCA_000759935.1
Full name Prochlorococcus marinus str. MIT 9123
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JNAK01000015 307,275 403
JNAK01000014 211,983 239
JNAK01000002 160,909 184
JNAK01000010 141,916 178
JNAK01000013 137,374 176
JNAK01000005 116,820 155
JNAK01000009 106,892 139
JNAK01000008 97,073 98
JNAK01000011 95,611 116
JNAK01000001 81,655 72
JNAK01000003 70,540 81
JNAK01000004 53,405 53
JNAK01000006 47,787 50
JNAK01000012 29,069 35
JNAK01000007 22,293 21
JNAK01000017 8,070 8
JNAK01000016 7,417 8
JNAK01000018 1,659 4
Total 1,697,748 2,020
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2

Resources

? | +/- | Top
About species GCA_000759935.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000759935.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000759935.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000759935.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759935.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759935.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759935.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759935.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759935.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759935.1/genes/interpro.txt (File format)

MicrobeBase