cyanobase » Prochlorococcus marinus str. GP2

Prochlorococcus marinus str. GP2

Summary

? | +/- | Top
Data source name GCA_000759885.1
Full name Prochlorococcus marinus str. GP2
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JNAH01000008 459,909 499
JNAH01000003 416,038 496
JNAH01000004 316,177 390
JNAH01000002 133,637 146
JNAH01000007 129,623 169
JNAH01000005 106,241 131
JNAH01000006 27,563 29
JNAH01000001 15,325 22
JNAH01000011 9,325 9
JNAH01000010 9,003 10
JNAH01000009 1,469 1
Total 1,624,310 1,902
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2

Resources

? | +/- | Top
About species GCA_000759885.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000759885.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000759885.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000759885.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759885.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759885.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759885.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759885.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759885.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759885.1/genes/interpro.txt (File format)

MicrobeBase