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cyanobase » Prochlorococcus sp. scB241_528N20

Prochlorococcus sp. scB241_528N20

Summary

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Data source name GCA_000634755.1
Full name Prochlorococcus sp. scB241_528N20
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLH01000216 127,066 0
JFLH01000148 95,797 0
JFLH01000052 91,111 0
JFLH01000219 81,087 0
JFLH01000055 63,873 0
JFLH01000103 62,256 0
JFLH01000010 49,453 0
JFLH01000143 49,091 0
JFLH01000066 46,585 0
JFLH01000100 35,854 0
JFLH01000127 33,736 0
JFLH01000006 33,497 0
JFLH01000215 28,669 0
JFLH01000174 25,166 0
JFLH01000007 19,122 0
JFLH01000012 18,770 0
JFLH01000149 17,503 0
JFLH01000142 16,750 0
JFLH01000101 16,607 0
JFLH01000016 14,533 0
JFLH01000098 14,063 0
JFLH01000009 13,246 0
JFLH01000128 13,026 0
JFLH01000099 9,840 0
JFLH01000014 8,218 0
JFLH01000171 7,596 0
JFLH01000116 6,893 0
JFLH01000078 5,528 0
JFLH01000125 5,325 0
JFLH01000005 5,293 0
JFLH01000129 5,119 0
JFLH01000117 4,843 0
JFLH01000119 4,734 0
JFLH01000008 4,449 0
JFLH01000217 4,179 0
JFLH01000123 3,640 0
JFLH01000102 3,238 0
JFLH01000053 2,922 0
JFLH01000170 2,456 0
JFLH01000063 2,132 0
JFLH01000124 1,817 0
JFLH01000104 1,789 0
JFLH01000079 1,712 0
JFLH01000175 1,671 0
JFLH01000056 1,657 0
JFLH01000118 1,461 0
JFLH01000001 1,436 0
JFLH01000017 1,421 0
JFLH01000141 1,398 0
JFLH01000172 1,389 0
JFLH01000105 1,299 0
JFLH01000187 1,288 0
JFLH01000151 1,213 0
JFLH01000029 1,181 0
JFLH01000213 1,163 0
JFLH01000146 1,114 0
JFLH01000097 1,113 0
JFLH01000032 1,093 0
JFLH01000003 1,016 0
JFLH01000013 1,012 0
JFLH01000126 984 0
JFLH01000121 983 0
JFLH01000150 983 0
JFLH01000022 963 0
JFLH01000214 924 0
JFLH01000208 907 0
JFLH01000169 886 0
JFLH01000084 869 0
JFLH01000021 791 0
JFLH01000026 782 0
JFLH01000161 779 0
JFLH01000173 771 0
JFLH01000065 729 0
JFLH01000086 713 0
JFLH01000107 686 0
JFLH01000042 682 0
JFLH01000206 671 0
JFLH01000043 669 0
JFLH01000048 665 0
JFLH01000090 659 0
JFLH01000157 656 0
JFLH01000072 625 0
JFLH01000218 624 0
JFLH01000025 623 0
JFLH01000020 580 0
JFLH01000023 571 0
JFLH01000064 567 0
JFLH01000147 564 0
JFLH01000049 558 0
JFLH01000203 552 0
JFLH01000038 548 0
JFLH01000019 540 0
JFLH01000004 538 0
JFLH01000190 526 0
JFLH01000071 501 0
JFLH01000168 500 0
JFLH01000015 492 0
JFLH01000033 485 0
JFLH01000156 482 0
JFLH01000081 470 0
JFLH01000108 468 0
JFLH01000192 468 0
JFLH01000211 467 0
JFLH01000200 465 0
JFLH01000030 457 0
JFLH01000027 452 0
JFLH01000179 437 0
JFLH01000034 434 0
JFLH01000225 431 0
JFLH01000051 430 0
JFLH01000167 430 0
JFLH01000155 424 0
JFLH01000050 422 0
JFLH01000207 415 0
JFLH01000076 414 0
JFLH01000198 410 0
JFLH01000087 409 0
JFLH01000159 405 0
JFLH01000046 405 0
JFLH01000002 402 0
JFLH01000093 391 0
JFLH01000136 389 0
JFLH01000201 384 0
JFLH01000193 382 0
JFLH01000210 380 0
JFLH01000158 374 0
JFLH01000212 373 0
JFLH01000113 371 0
JFLH01000138 360 0
JFLH01000082 358 0
JFLH01000209 356 0
JFLH01000040 354 0
JFLH01000039 352 0
JFLH01000153 341 0
JFLH01000028 341 0
JFLH01000196 337 0
JFLH01000137 336 0
JFLH01000011 332 0
JFLH01000133 332 0
JFLH01000197 325 0
JFLH01000152 325 0
JFLH01000041 321 0
JFLH01000060 311 0
JFLH01000115 307 0
JFLH01000131 304 0
JFLH01000054 303 0
JFLH01000018 301 0
JFLH01000089 299 0
JFLH01000044 298 0
JFLH01000220 292 0
JFLH01000162 290 0
JFLH01000070 289 0
JFLH01000095 289 0
JFLH01000221 285 0
JFLH01000083 281 0
JFLH01000222 280 0
JFLH01000110 279 0
JFLH01000092 278 0
JFLH01000106 278 0
JFLH01000145 276 0
JFLH01000180 274 0
JFLH01000224 273 0
JFLH01000204 271 0
JFLH01000178 269 0
JFLH01000185 269 0
JFLH01000177 269 0
JFLH01000094 268 0
JFLH01000112 266 0
JFLH01000199 265 0
JFLH01000191 265 0
JFLH01000166 264 0
JFLH01000139 264 0
JFLH01000067 263 0
JFLH01000195 262 0
JFLH01000186 258 0
JFLH01000140 257 0
JFLH01000111 257 0
JFLH01000080 256 0
JFLH01000154 255 0
JFLH01000114 254 0
JFLH01000130 250 0
JFLH01000075 246 0
JFLH01000024 244 0
JFLH01000135 240 0
JFLH01000031 239 0
JFLH01000069 239 0
JFLH01000181 236 0
JFLH01000134 236 0
JFLH01000096 235 0
JFLH01000085 235 0
JFLH01000144 234 0
JFLH01000176 234 0
JFLH01000068 234 0
JFLH01000061 233 0
JFLH01000057 230 0
JFLH01000160 229 0
JFLH01000035 227 0
JFLH01000091 223 0
JFLH01000184 223 0
JFLH01000189 222 0
JFLH01000074 219 0
JFLH01000188 217 0
JFLH01000088 215 0
JFLH01000058 215 0
JFLH01000047 215 0
JFLH01000120 215 0
JFLH01000109 215 0
JFLH01000205 214 0
JFLH01000036 213 0
JFLH01000122 212 0
JFLH01000132 211 0
JFLH01000059 209 0
JFLH01000183 209 0
JFLH01000202 209 0
JFLH01000163 209 0
JFLH01000077 209 0
JFLH01000045 208 0
JFLH01000073 208 0
JFLH01000194 205 0
JFLH01000062 205 0
JFLH01000223 205 0
JFLH01000182 204 0
JFLH01000037 203 0
JFLH01000165 200 0
JFLH01000164 188 0
Total 1,144,506 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634755.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634755.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634755.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634755.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634755.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634755.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634755.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634755.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634755.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634755.1/genes/interpro.txt (File format)

MicrobeBase