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cyanobase » Dolichospermum circinale AWQC310F

Dolichospermum circinale AWQC310F

Summary

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Data source name GCA_000426925.1
Full name Dolichospermum circinale AWQC310F
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Dolichospermum; Dolichospermum circinale.

Genome Information

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Chromosomes
Name Size (bp) Genes
KE384663 360,115 0
KE384674 242,860 0
KE384685 221,279 0
KE384696 180,743 0
KE384705 178,971 0
KE384711 162,487 0
KE384713 152,171 0
KE384716 147,621 0
KE384717 126,546 0
KE384664 122,867 0
KE384665 121,391 0
KE384666 120,197 0
KE384667 119,350 0
KE384668 115,790 0
KE384669 111,860 0
KE384670 110,859 0
KE384671 106,670 0
KE384672 95,098 0
KE384673 94,686 0
KE384675 85,182 0
KE384676 84,602 0
KE384677 75,684 0
KE384678 75,603 0
KE384679 67,667 0
KE384680 65,648 0
KE384681 61,278 0
KE384682 60,765 0
KE384683 57,057 0
KE384684 55,720 0
KE384686 54,979 0
KE384687 54,603 0
KE384688 53,863 0
KE384689 53,145 0
KE384690 50,828 0
KE384691 50,147 0
KE384692 49,714 0
KE384693 47,627 0
KE384694 43,514 0
KE384695 40,745 0
KE384697 34,268 0
KE384698 31,087 0
KE384699 26,342 0
KE384700 23,703 0
APIZ01000318 19,546 0
KE384701 18,181 0
APIZ01000321 18,078 0
KE384702 17,410 0
KE384703 16,480 0
KE384704 15,573 0
KE384706 14,453 0
KE384707 13,557 0
APIZ01000336 11,369 0
KE384708 9,789 0
APIZ01000339 8,205 0
APIZ01000340 4,816 0
APIZ01000341 4,057 0
KE384709 3,688 0
KE384710 3,346 0
APIZ01000346 3,287 0
APIZ01000347 3,134 0
APIZ01000348 2,747 0
APIZ01000349 2,391 0
APIZ01000350 2,164 0
APIZ01000351 1,782 0
APIZ01000352 1,689 0
APIZ01000353 1,524 0
KE384712 1,449 0
APIZ01000356 1,418 0
APIZ01000357 1,268 0
KE384714 1,127 0
APIZ01000360 1,008 0
APIZ01000361 1,001 0
APIZ01000362 782 0
APIZ01000363 687 0
APIZ01000364 654 0
KE384715 603 0
APIZ01000367 572 0
APIZ01000368 568 0
APIZ01000369 558 0
APIZ01000370 522 0
APIZ01000371 521 0
APIZ01000372 510 0
Total 4,405,846 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000426925.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000426925.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000426925.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000426925.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000426925.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000426925.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000426925.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000426925.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000426925.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000426925.1/genes/interpro.txt (File format)

MicrobeBase