cyanobase » Candidatus Synechococcus spongiarum SP3

Candidatus Synechococcus spongiarum SP3

Summary

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Data source name GCA_001007665.1
Full name Candidatus Synechococcus spongiarum SP3 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JXQG01000001 86,948 94
JXQG01000002 84,500 70
JXQG01000003 60,233 58
JXQG01000004 56,945 39
JXQG01000005 54,796 43
JXQG01000006 49,470 34
JXQG01000007 45,132 44
JXQG01000008 42,475 32
JXQG01000009 42,183 35
JXQG01000010 40,247 30
JXQG01000011 38,923 31
JXQG01000012 38,239 28
JXQG01000013 38,142 28
JXQG01000014 37,973 32
JXQG01000015 36,815 27
JXQG01000016 35,886 28
JXQG01000017 34,600 23
JXQG01000018 34,049 26
JXQG01000019 31,771 21
JXQG01000020 30,165 24
JXQG01000021 29,827 24
JXQG01000022 28,838 23
JXQG01000023 27,840 30
JXQG01000024 27,648 17
JXQG01000025 27,463 30
JXQG01000026 27,311 17
JXQG01000027 26,559 20
JXQG01000028 26,010 21
JXQG01000029 25,489 17
JXQG01000030 24,383 19
JXQG01000031 24,347 16
JXQG01000032 24,206 13
JXQG01000033 23,933 23
JXQG01000034 22,585 22
JXQG01000035 21,374 22
JXQG01000036 20,694 14
JXQG01000037 19,711 15
JXQG01000038 18,916 14
JXQG01000039 18,713 12
JXQG01000040 17,789 12
JXQG01000041 17,444 9
JXQG01000042 17,265 17
JXQG01000043 17,194 13
JXQG01000044 17,104 11
JXQG01000045 16,849 15
JXQG01000046 16,765 15
JXQG01000047 16,620 16
JXQG01000048 16,513 13
JXQG01000049 16,193 9
JXQG01000050 15,726 13
JXQG01000051 15,588 12
JXQG01000052 15,493 14
JXQG01000053 15,478 14
JXQG01000054 15,363 13
JXQG01000055 15,174 11
JXQG01000056 14,953 12
JXQG01000057 13,947 13
JXQG01000058 13,759 9
JXQG01000059 13,478 10
JXQG01000060 13,447 10
JXQG01000061 13,183 8
JXQG01000062 12,404 16
JXQG01000063 12,369 13
JXQG01000064 11,972 17
JXQG01000065 11,898 11
JXQG01000066 11,264 10
JXQG01000067 11,193 8
JXQG01000068 11,141 11
JXQG01000069 10,938 4
JXQG01000070 10,066 7
JXQG01000071 10,054 7
JXQG01000072 9,957 11
JXQG01000073 9,825 9
JXQG01000074 9,781 5
JXQG01000075 9,692 8
JXQG01000076 9,532 11
JXQG01000077 9,398 9
JXQG01000078 9,197 5
JXQG01000079 9,136 9
JXQG01000080 8,600 4
JXQG01000081 8,594 6
JXQG01000082 8,567 9
JXQG01000083 8,517 10
JXQG01000084 8,361 9
JXQG01000085 8,140 7
JXQG01000086 7,855 9
JXQG01000087 7,825 5
JXQG01000088 7,507 5
JXQG01000089 7,245 7
JXQG01000090 7,039 4
JXQG01000091 6,939 6
JXQG01000092 6,750 7
JXQG01000093 6,554 5
JXQG01000094 6,421 7
JXQG01000095 5,892 4
JXQG01000096 5,829 6
JXQG01000097 5,703 3
JXQG01000098 5,508 6
JXQG01000099 5,439 6
JXQG01000100 5,139 4
JXQG01000101 5,066 3
JXQG01000102 5,010 3
JXQG01000103 4,970 4
JXQG01000104 4,679 3
JXQG01000105 4,526 5
JXQG01000106 4,376 4
JXQG01000107 3,989 3
JXQG01000108 3,274 1
JXQG01000109 3,161 1
JXQG01000110 3,101 4
JXQG01000111 3,090 3
JXQG01000112 3,011 4
JXQG01000113 2,991 3
JXQG01000114 2,691 3
JXQG01000115 2,546 2
JXQG01000116 2,500 5
JXQG01000117 2,078 2
Total 2,129,964 1,738
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001007665.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001007665.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001007665.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001007665.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001007665.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001007665.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001007665.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001007665.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001007665.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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