cyanobase » Tolypothrix bouteillei VB521301

Tolypothrix bouteillei VB521301

Summary

? | +/- | Top
Data source name GCA_000760695.2
Full name Tolypothrix bouteillei VB521301 External
Taxonomy Lineage Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JHEG02000059 2,504,461 1,712
JHEG02000048 2,323,652 1,621
JHEG02000058 1,987,087 1,397
JHEG02000019 1,181,247 826
JHEG02000037 880,662 626
JHEG02000001 456,461 266
JHEG02000054 402,212 253
JHEG02000012 392,678 230
JHEG02000066 193,260 101
JHEG02000040 166,418 123
JHEG02000053 163,218 115
JHEG02000043 151,540 104
JHEG02000042 147,873 33
JHEG02000026 57,571 31
JHEG02000036 51,568 49
JHEG02000046 49,779 37
JHEG02000068 47,563 35
JHEG02000007 44,806 39
JHEG02000016 31,987 26
JHEG02000022 27,504 22
JHEG02000003 27,126 12
JHEG02000070 24,441 22
JHEG02000014 21,245 11
JHEG02000021 14,484 3
JHEG02000032 13,962 14
JHEG02000057 12,627 8
JHEG02000052 12,395 9
JHEG02000061 10,462 9
JHEG02000069 9,433 3
JHEG02000013 7,750 5
JHEG02000055 7,563 7
JHEG02000002 6,837 2
JHEG02000062 6,556 3
JHEG02000060 6,129 5
JHEG02000050 5,745 3
JHEG02000015 5,605 5
JHEG02000033 5,569 4
JHEG02000005 5,338 6
JHEG02000030 5,253 7
JHEG02000038 5,177 2
JHEG02000065 5,172 4
JHEG02000049 5,168 4
JHEG02000044 5,054 5
JHEG02000027 4,882 2
JHEG02000006 4,823 3
JHEG02000035 4,633 5
JHEG02000024 4,512 2
JHEG02000020 4,474 3
JHEG02000010 4,439 3
JHEG02000031 3,606 3
JHEG02000023 3,467 3
JHEG02000018 3,116 1
JHEG02000009 3,081 7
JHEG02000051 3,022 4
JHEG02000067 2,818 1
JHEG02000034 2,735 3
JHEG02000041 2,725 3
JHEG02000028 2,607 3
JHEG02000056 2,416 2
JHEG02000025 2,403 1
JHEG02000011 2,374 2
JHEG02000045 2,357 2
JHEG02000064 2,265 3
JHEG02000039 2,261 2
JHEG02000017 2,196 1
JHEG02000029 2,147 3
JHEG02000047 2,097 3
JHEG02000004 2,076 3
JHEG02000008 2,056 1
JHEG02000063 2,037 1
Total 11,572,263 7,869
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000760695.2

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760695.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760695.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760695.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760695.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760695.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760695.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760695.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760695.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer