cyanobase » Prochlorococcus sp. scB243_498P3

Prochlorococcus sp. scB243_498P3

Summary

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Data source name GCA_000635695.1
Full name Prochlorococcus sp. scB243_498P3 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMY01000139 256,521 0
JFMY01000032 210,421 0
JFMY01000031 122,605 0
JFMY01000026 115,703 0
JFMY01000001 89,994 0
JFMY01000027 84,435 0
JFMY01000135 81,280 0
JFMY01000215 61,333 0
JFMY01000050 40,904 0
JFMY01000043 35,079 0
JFMY01000044 27,032 0
JFMY01000041 17,362 0
JFMY01000089 15,482 0
JFMY01000029 14,788 0
JFMY01000136 14,105 0
JFMY01000086 13,945 0
JFMY01000218 12,338 0
JFMY01000030 12,265 0
JFMY01000245 10,822 0
JFMY01000088 10,470 0
JFMY01000138 10,211 0
JFMY01000028 9,592 0
JFMY01000194 9,123 0
JFMY01000087 8,561 0
JFMY01000226 6,089 0
JFMY01000244 5,466 0
JFMY01000140 5,452 0
JFMY01000137 4,895 0
JFMY01000192 4,765 0
JFMY01000214 4,742 0
JFMY01000125 3,693 0
JFMY01000126 3,241 0
JFMY01000199 2,478 0
JFMY01000049 2,222 0
JFMY01000253 2,207 0
JFMY01000227 2,170 0
JFMY01000247 2,120 0
JFMY01000213 1,983 0
JFMY01000193 1,645 0
JFMY01000005 1,532 0
JFMY01000210 1,444 0
JFMY01000169 1,395 0
JFMY01000127 1,327 0
JFMY01000024 1,291 0
JFMY01000129 1,216 0
JFMY01000042 1,202 0
JFMY01000190 1,166 0
JFMY01000164 1,109 0
JFMY01000206 1,071 0
JFMY01000228 1,069 0
JFMY01000145 1,035 0
JFMY01000004 1,015 0
JFMY01000045 950 0
JFMY01000104 944 0
JFMY01000147 910 0
JFMY01000091 902 0
JFMY01000191 897 0
JFMY01000093 897 0
JFMY01000177 884 0
JFMY01000171 830 0
JFMY01000155 822 0
JFMY01000216 777 0
JFMY01000246 755 0
JFMY01000146 749 0
JFMY01000189 741 0
JFMY01000174 737 0
JFMY01000207 725 0
JFMY01000255 701 0
JFMY01000152 692 0
JFMY01000166 689 0
JFMY01000003 683 0
JFMY01000232 668 0
JFMY01000150 666 0
JFMY01000154 651 0
JFMY01000231 644 0
JFMY01000021 638 0
JFMY01000025 624 0
JFMY01000233 592 0
JFMY01000047 583 0
JFMY01000235 579 0
JFMY01000195 578 0
JFMY01000103 563 0
JFMY01000229 562 0
JFMY01000236 562 0
JFMY01000204 561 0
JFMY01000234 561 0
JFMY01000197 552 0
JFMY01000151 551 0
JFMY01000115 551 0
JFMY01000069 546 0
JFMY01000133 532 0
JFMY01000248 529 0
JFMY01000209 525 0
JFMY01000123 524 0
JFMY01000014 521 0
JFMY01000205 518 0
JFMY01000230 518 0
JFMY01000211 507 0
JFMY01000132 505 0
JFMY01000142 505 0
JFMY01000118 497 0
JFMY01000256 486 0
JFMY01000006 467 0
JFMY01000257 466 0
JFMY01000033 466 0
JFMY01000186 457 0
JFMY01000128 455 0
JFMY01000016 453 0
JFMY01000108 452 0
JFMY01000160 452 0
JFMY01000058 445 0
JFMY01000046 435 0
JFMY01000198 427 0
JFMY01000062 425 0
JFMY01000219 415 0
JFMY01000162 409 0
JFMY01000203 407 0
JFMY01000013 407 0
JFMY01000131 404 0
JFMY01000102 401 0
JFMY01000141 396 0
JFMY01000055 387 0
JFMY01000008 385 0
JFMY01000243 379 0
JFMY01000090 378 0
JFMY01000202 371 0
JFMY01000017 368 0
JFMY01000009 367 0
JFMY01000056 366 0
JFMY01000119 364 0
JFMY01000074 363 0
JFMY01000173 363 0
JFMY01000144 362 0
JFMY01000168 360 0
JFMY01000040 359 0
JFMY01000114 358 0
JFMY01000134 353 0
JFMY01000178 349 0
JFMY01000241 347 0
JFMY01000101 345 0
JFMY01000200 342 0
JFMY01000054 338 0
JFMY01000183 338 0
JFMY01000099 335 0
JFMY01000153 333 0
JFMY01000111 331 0
JFMY01000163 330 0
JFMY01000122 327 0
JFMY01000011 326 0
JFMY01000059 324 0
JFMY01000092 323 0
JFMY01000180 321 0
JFMY01000080 320 0
JFMY01000156 320 0
JFMY01000094 318 0
JFMY01000113 316 0
JFMY01000072 315 0
JFMY01000188 313 0
JFMY01000196 311 0
JFMY01000149 308 0
JFMY01000121 306 0
JFMY01000039 303 0
JFMY01000124 303 0
JFMY01000105 298 0
JFMY01000242 297 0
JFMY01000037 297 0
JFMY01000187 294 0
JFMY01000249 294 0
JFMY01000157 291 0
JFMY01000254 290 0
JFMY01000002 290 0
JFMY01000184 289 0
JFMY01000075 289 0
JFMY01000130 287 0
JFMY01000175 284 0
JFMY01000120 284 0
JFMY01000201 284 0
JFMY01000018 283 0
JFMY01000096 279 0
JFMY01000239 277 0
JFMY01000217 277 0
JFMY01000208 276 0
JFMY01000179 275 0
JFMY01000182 275 0
JFMY01000238 275 0
JFMY01000221 273 0
JFMY01000038 273 0
JFMY01000117 272 0
JFMY01000071 271 0
JFMY01000065 271 0
JFMY01000098 270 0
JFMY01000015 268 0
JFMY01000057 267 0
JFMY01000106 265 0
JFMY01000079 264 0
JFMY01000223 264 0
JFMY01000012 262 0
JFMY01000063 262 0
JFMY01000010 261 0
JFMY01000034 261 0
JFMY01000061 261 0
JFMY01000100 259 0
JFMY01000097 259 0
JFMY01000172 256 0
JFMY01000252 256 0
JFMY01000181 255 0
JFMY01000250 255 0
JFMY01000107 254 0
JFMY01000048 253 0
JFMY01000212 253 0
JFMY01000064 251 0
JFMY01000019 250 0
JFMY01000185 249 0
JFMY01000143 249 0
JFMY01000078 249 0
JFMY01000007 247 0
JFMY01000165 246 0
JFMY01000053 243 0
JFMY01000035 241 0
JFMY01000036 241 0
JFMY01000095 240 0
JFMY01000076 237 0
JFMY01000022 237 0
JFMY01000240 236 0
JFMY01000220 234 0
JFMY01000060 234 0
JFMY01000073 234 0
JFMY01000224 232 0
JFMY01000251 230 0
JFMY01000258 230 0
JFMY01000116 229 0
JFMY01000020 229 0
JFMY01000170 228 0
JFMY01000112 227 0
JFMY01000110 225 0
JFMY01000176 222 0
JFMY01000159 220 0
JFMY01000070 219 0
JFMY01000051 218 0
JFMY01000077 215 0
JFMY01000066 214 0
JFMY01000023 214 0
JFMY01000084 212 0
JFMY01000237 210 0
JFMY01000161 208 0
JFMY01000085 207 0
JFMY01000067 206 0
JFMY01000082 206 0
JFMY01000222 205 0
JFMY01000052 205 0
JFMY01000068 203 0
JFMY01000167 203 0
JFMY01000081 203 0
JFMY01000109 203 0
JFMY01000083 202 0
JFMY01000148 201 0
JFMY01000225 201 0
JFMY01000158 200 0
Total 1,432,254 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635695.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635695.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635695.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635695.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635695.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635695.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635695.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635695.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635695.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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