cyanobase » Prochlorococcus sp. scB245a_518O7

Prochlorococcus sp. scB245a_518O7

Summary

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Data source name GCA_000635135.1
Full name Prochlorococcus sp. scB245a_518O7 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNG01000001 622,125 0
JFNG01000173 154,454 0
JFNG01000055 96,552 0
JFNG01000223 77,736 0
JFNG01000151 75,682 0
JFNG01000002 56,148 0
JFNG01000148 34,670 0
JFNG01000032 25,199 0
JFNG01000150 24,756 0
JFNG01000050 23,749 0
JFNG01000216 22,418 0
JFNG01000051 22,121 0
JFNG01000183 16,156 0
JFNG01000152 12,225 0
JFNG01000003 11,629 0
JFNG01000149 9,718 0
JFNG01000174 6,701 0
JFNG01000222 6,695 0
JFNG01000132 6,595 0
JFNG01000056 6,574 0
JFNG01000048 6,472 0
JFNG01000035 6,396 0
JFNG01000171 5,252 0
JFNG01000146 5,114 0
JFNG01000215 5,066 0
JFNG01000033 4,792 0
JFNG01000170 4,657 0
JFNG01000129 4,350 0
JFNG01000224 3,458 0
JFNG01000034 3,386 0
JFNG01000145 3,037 0
JFNG01000058 2,964 0
JFNG01000049 2,481 0
JFNG01000057 2,374 0
JFNG01000190 2,171 0
JFNG01000036 2,170 0
JFNG01000110 1,916 0
JFNG01000082 1,763 0
JFNG01000080 1,567 0
JFNG01000081 1,490 0
JFNG01000025 1,373 0
JFNG01000156 1,347 0
JFNG01000063 1,283 0
JFNG01000182 1,236 0
JFNG01000121 1,176 0
JFNG01000179 1,137 0
JFNG01000090 1,128 0
JFNG01000221 1,100 0
JFNG01000230 1,094 0
JFNG01000188 1,082 0
JFNG01000044 1,065 0
JFNG01000172 1,051 0
JFNG01000106 1,022 0
JFNG01000147 998 0
JFNG01000038 985 0
JFNG01000026 978 0
JFNG01000111 949 0
JFNG01000102 890 0
JFNG01000040 884 0
JFNG01000136 851 0
JFNG01000130 845 0
JFNG01000054 836 0
JFNG01000042 815 0
JFNG01000008 807 0
JFNG01000012 793 0
JFNG01000043 787 0
JFNG01000178 772 0
JFNG01000180 772 0
JFNG01000186 769 0
JFNG01000131 747 0
JFNG01000154 690 0
JFNG01000203 681 0
JFNG01000100 677 0
JFNG01000108 661 0
JFNG01000123 649 0
JFNG01000204 635 0
JFNG01000226 631 0
JFNG01000207 627 0
JFNG01000052 626 0
JFNG01000017 625 0
JFNG01000068 616 0
JFNG01000201 613 0
JFNG01000231 602 0
JFNG01000217 600 0
JFNG01000031 582 0
JFNG01000181 574 0
JFNG01000227 558 0
JFNG01000184 549 0
JFNG01000137 538 0
JFNG01000087 535 0
JFNG01000011 535 0
JFNG01000085 533 0
JFNG01000029 523 0
JFNG01000037 521 0
JFNG01000109 521 0
JFNG01000185 517 0
JFNG01000107 508 0
JFNG01000024 485 0
JFNG01000187 482 0
JFNG01000070 477 0
JFNG01000162 468 0
JFNG01000167 466 0
JFNG01000041 463 0
JFNG01000139 448 0
JFNG01000071 444 0
JFNG01000045 440 0
JFNG01000006 440 0
JFNG01000105 439 0
JFNG01000076 433 0
JFNG01000116 432 0
JFNG01000077 428 0
JFNG01000160 428 0
JFNG01000007 427 0
JFNG01000064 423 0
JFNG01000138 418 0
JFNG01000122 411 0
JFNG01000155 411 0
JFNG01000093 410 0
JFNG01000094 408 0
JFNG01000097 406 0
JFNG01000047 403 0
JFNG01000046 402 0
JFNG01000143 401 0
JFNG01000114 399 0
JFNG01000112 398 0
JFNG01000067 393 0
JFNG01000192 392 0
JFNG01000115 389 0
JFNG01000144 384 0
JFNG01000209 383 0
JFNG01000168 381 0
JFNG01000084 380 0
JFNG01000153 376 0
JFNG01000164 376 0
JFNG01000079 371 0
JFNG01000166 369 0
JFNG01000208 368 0
JFNG01000103 367 0
JFNG01000210 365 0
JFNG01000005 365 0
JFNG01000039 361 0
JFNG01000015 358 0
JFNG01000118 354 0
JFNG01000075 352 0
JFNG01000117 346 0
JFNG01000009 343 0
JFNG01000083 342 0
JFNG01000060 342 0
JFNG01000228 336 0
JFNG01000062 336 0
JFNG01000119 335 0
JFNG01000194 327 0
JFNG01000065 318 0
JFNG01000086 317 0
JFNG01000127 315 0
JFNG01000091 314 0
JFNG01000189 314 0
JFNG01000211 311 0
JFNG01000135 310 0
JFNG01000069 308 0
JFNG01000195 306 0
JFNG01000161 305 0
JFNG01000018 303 0
JFNG01000088 297 0
JFNG01000124 295 0
JFNG01000126 291 0
JFNG01000101 290 0
JFNG01000028 289 0
JFNG01000053 288 0
JFNG01000193 286 0
JFNG01000200 279 0
JFNG01000159 278 0
JFNG01000030 273 0
JFNG01000199 273 0
JFNG01000140 270 0
JFNG01000066 267 0
JFNG01000021 267 0
JFNG01000016 267 0
JFNG01000128 266 0
JFNG01000141 265 0
JFNG01000134 265 0
JFNG01000125 263 0
JFNG01000061 260 0
JFNG01000196 256 0
JFNG01000163 256 0
JFNG01000092 254 0
JFNG01000225 254 0
JFNG01000096 252 0
JFNG01000165 252 0
JFNG01000022 250 0
JFNG01000202 250 0
JFNG01000198 249 0
JFNG01000133 248 0
JFNG01000142 246 0
JFNG01000098 246 0
JFNG01000095 239 0
JFNG01000176 238 0
JFNG01000020 236 0
JFNG01000169 235 0
JFNG01000013 234 0
JFNG01000206 232 0
JFNG01000099 232 0
JFNG01000023 231 0
JFNG01000218 230 0
JFNG01000014 229 0
JFNG01000078 227 0
JFNG01000019 225 0
JFNG01000059 225 0
JFNG01000004 223 0
JFNG01000104 223 0
JFNG01000214 222 0
JFNG01000074 221 0
JFNG01000089 219 0
JFNG01000157 215 0
JFNG01000229 215 0
JFNG01000220 213 0
JFNG01000197 212 0
JFNG01000120 212 0
JFNG01000113 212 0
JFNG01000158 211 0
JFNG01000010 211 0
JFNG01000027 211 0
JFNG01000191 211 0
JFNG01000205 206 0
JFNG01000212 206 0
JFNG01000175 204 0
JFNG01000213 204 0
JFNG01000073 203 0
JFNG01000177 202 0
JFNG01000219 201 0
JFNG01000072 201 0
Total 1,469,993 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635135.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635135.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635135.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635135.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635135.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635135.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635135.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635135.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635135.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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