cyanobase » Prochlorococcus sp. scB243_497I20

Prochlorococcus sp. scB243_497I20

Summary

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Data source name GCA_000634935.1
Full name Prochlorococcus sp. scB243_497I20 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMI01000002 346,023 0
JFMI01000101 150,532 0
JFMI01000054 133,204 0
JFMI01000130 65,429 0
JFMI01000108 46,394 0
JFMI01000129 40,415 0
JFMI01000001 28,356 0
JFMI01000111 14,473 0
JFMI01000004 12,634 0
JFMI01000003 11,637 0
JFMI01000127 10,973 0
JFMI01000056 10,012 0
JFMI01000060 9,661 0
JFMI01000059 8,283 0
JFMI01000115 8,258 0
JFMI01000118 7,963 0
JFMI01000063 7,374 0
JFMI01000135 7,316 0
JFMI01000128 6,628 0
JFMI01000126 5,899 0
JFMI01000116 4,801 0
JFMI01000051 4,554 0
JFMI01000030 4,453 0
JFMI01000136 4,066 0
JFMI01000110 3,763 0
JFMI01000100 3,604 0
JFMI01000053 3,374 0
JFMI01000026 3,257 0
JFMI01000055 2,998 0
JFMI01000109 2,949 0
JFMI01000102 1,940 0
JFMI01000114 1,837 0
JFMI01000125 1,694 0
JFMI01000049 1,540 0
JFMI01000029 1,512 0
JFMI01000062 1,476 0
JFMI01000061 1,355 0
JFMI01000025 1,319 0
JFMI01000057 1,159 0
JFMI01000117 849 0
JFMI01000083 818 0
JFMI01000058 809 0
JFMI01000084 782 0
JFMI01000032 778 0
JFMI01000037 765 0
JFMI01000016 751 0
JFMI01000024 694 0
JFMI01000015 680 0
JFMI01000067 659 0
JFMI01000020 635 0
JFMI01000080 635 0
JFMI01000017 609 0
JFMI01000031 608 0
JFMI01000033 601 0
JFMI01000093 591 0
JFMI01000121 586 0
JFMI01000035 546 0
JFMI01000052 546 0
JFMI01000092 495 0
JFMI01000119 484 0
JFMI01000095 483 0
JFMI01000018 483 0
JFMI01000064 478 0
JFMI01000077 462 0
JFMI01000085 457 0
JFMI01000036 446 0
JFMI01000094 442 0
JFMI01000039 432 0
JFMI01000021 428 0
JFMI01000088 422 0
JFMI01000091 419 0
JFMI01000048 410 0
JFMI01000107 405 0
JFMI01000113 403 0
JFMI01000112 396 0
JFMI01000047 391 0
JFMI01000023 391 0
JFMI01000034 390 0
JFMI01000120 378 0
JFMI01000045 373 0
JFMI01000068 370 0
JFMI01000007 365 0
JFMI01000074 361 0
JFMI01000050 348 0
JFMI01000087 343 0
JFMI01000010 340 0
JFMI01000097 339 0
JFMI01000038 334 0
JFMI01000072 333 0
JFMI01000133 327 0
JFMI01000028 323 0
JFMI01000122 319 0
JFMI01000082 318 0
JFMI01000104 318 0
JFMI01000022 314 0
JFMI01000011 314 0
JFMI01000131 314 0
JFMI01000134 313 0
JFMI01000012 308 0
JFMI01000079 304 0
JFMI01000096 300 0
JFMI01000090 297 0
JFMI01000086 290 0
JFMI01000044 288 0
JFMI01000103 287 0
JFMI01000124 281 0
JFMI01000070 280 0
JFMI01000089 274 0
JFMI01000075 270 0
JFMI01000046 262 0
JFMI01000043 260 0
JFMI01000105 255 0
JFMI01000027 254 0
JFMI01000005 250 0
JFMI01000041 248 0
JFMI01000013 244 0
JFMI01000078 241 0
JFMI01000009 237 0
JFMI01000076 233 0
JFMI01000106 233 0
JFMI01000066 232 0
JFMI01000042 229 0
JFMI01000014 225 0
JFMI01000019 223 0
JFMI01000065 222 0
JFMI01000040 219 0
JFMI01000073 216 0
JFMI01000081 210 0
JFMI01000098 209 0
JFMI01000099 208 0
JFMI01000006 206 0
JFMI01000123 206 0
JFMI01000071 206 0
JFMI01000008 205 0
JFMI01000132 201 0
JFMI01000069 167 0
Total 1,020,798 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634935.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634935.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634935.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634935.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634935.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634935.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634935.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634935.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634935.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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