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cyanobase » Prochlorococcus sp. scB241_526N5

Prochlorococcus sp. scB241_526N5

Summary

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Data source name GCA_000634655.1
Full name Prochlorococcus sp. scB241_526N5
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKS01000176 56,092 0
JFKS01000094 37,214 0
JFKS01000036 35,140 0
JFKS01000090 32,542 0
JFKS01000055 25,194 0
JFKS01000034 20,507 0
JFKS01000032 20,028 0
JFKS01000024 17,334 0
JFKS01000001 16,260 0
JFKS01000016 15,482 0
JFKS01000093 14,441 0
JFKS01000035 13,841 0
JFKS01000002 13,650 0
JFKS01000056 11,072 0
JFKS01000175 10,733 0
JFKS01000092 10,308 0
JFKS01000131 6,938 0
JFKS01000033 6,651 0
JFKS01000184 6,390 0
JFKS01000003 6,357 0
JFKS01000057 6,109 0
JFKS01000058 5,870 0
JFKS01000030 5,606 0
JFKS01000054 4,538 0
JFKS01000021 4,477 0
JFKS01000132 3,526 0
JFKS01000025 3,461 0
JFKS01000023 3,361 0
JFKS01000031 3,113 0
JFKS01000029 2,448 0
JFKS01000026 2,033 0
JFKS01000020 1,958 0
JFKS01000136 1,742 0
JFKS01000028 1,539 0
JFKS01000018 1,492 0
JFKS01000039 1,407 0
JFKS01000009 1,353 0
JFKS01000181 1,297 0
JFKS01000126 1,043 0
JFKS01000037 1,024 0
JFKS01000027 951 0
JFKS01000129 933 0
JFKS01000120 886 0
JFKS01000101 852 0
JFKS01000134 781 0
JFKS01000038 776 0
JFKS01000010 773 0
JFKS01000019 756 0
JFKS01000022 742 0
JFKS01000133 724 0
JFKS01000118 722 0
JFKS01000045 720 0
JFKS01000183 714 0
JFKS01000137 714 0
JFKS01000150 677 0
JFKS01000072 660 0
JFKS01000121 658 0
JFKS01000141 636 0
JFKS01000087 618 0
JFKS01000017 596 0
JFKS01000043 568 0
JFKS01000151 548 0
JFKS01000051 543 0
JFKS01000040 541 0
JFKS01000062 537 0
JFKS01000146 523 0
JFKS01000164 509 0
JFKS01000153 504 0
JFKS01000124 502 0
JFKS01000116 494 0
JFKS01000083 491 0
JFKS01000167 484 0
JFKS01000139 475 0
JFKS01000154 475 0
JFKS01000114 470 0
JFKS01000053 465 0
JFKS01000128 462 0
JFKS01000170 451 0
JFKS01000012 449 0
JFKS01000085 445 0
JFKS01000013 440 0
JFKS01000044 440 0
JFKS01000113 438 0
JFKS01000160 437 0
JFKS01000098 417 0
JFKS01000155 414 0
JFKS01000125 405 0
JFKS01000014 404 0
JFKS01000015 401 0
JFKS01000123 400 0
JFKS01000166 399 0
JFKS01000108 398 0
JFKS01000148 391 0
JFKS01000102 389 0
JFKS01000069 387 0
JFKS01000042 380 0
JFKS01000071 380 0
JFKS01000059 377 0
JFKS01000080 372 0
JFKS01000097 372 0
JFKS01000144 370 0
JFKS01000079 358 0
JFKS01000075 358 0
JFKS01000162 351 0
JFKS01000111 351 0
JFKS01000127 347 0
JFKS01000064 347 0
JFKS01000046 344 0
JFKS01000169 344 0
JFKS01000107 342 0
JFKS01000084 340 0
JFKS01000119 331 0
JFKS01000163 331 0
JFKS01000172 324 0
JFKS01000152 323 0
JFKS01000068 322 0
JFKS01000065 320 0
JFKS01000067 314 0
JFKS01000088 310 0
JFKS01000156 308 0
JFKS01000099 308 0
JFKS01000082 297 0
JFKS01000182 296 0
JFKS01000004 294 0
JFKS01000063 293 0
JFKS01000135 292 0
JFKS01000149 290 0
JFKS01000050 289 0
JFKS01000078 281 0
JFKS01000168 280 0
JFKS01000096 278 0
JFKS01000177 275 0
JFKS01000007 274 0
JFKS01000074 271 0
JFKS01000041 266 0
JFKS01000147 266 0
JFKS01000006 265 0
JFKS01000103 265 0
JFKS01000060 264 0
JFKS01000086 263 0
JFKS01000117 262 0
JFKS01000052 256 0
JFKS01000161 252 0
JFKS01000011 248 0
JFKS01000112 247 0
JFKS01000142 246 0
JFKS01000143 245 0
JFKS01000048 241 0
JFKS01000138 240 0
JFKS01000061 237 0
JFKS01000158 232 0
JFKS01000105 231 0
JFKS01000130 231 0
JFKS01000100 229 0
JFKS01000008 228 0
JFKS01000049 226 0
JFKS01000157 223 0
JFKS01000106 222 0
JFKS01000171 221 0
JFKS01000066 220 0
JFKS01000077 220 0
JFKS01000165 220 0
JFKS01000186 219 0
JFKS01000076 218 0
JFKS01000145 216 0
JFKS01000110 216 0
JFKS01000173 215 0
JFKS01000047 214 0
JFKS01000104 212 0
JFKS01000081 212 0
JFKS01000115 209 0
JFKS01000185 209 0
JFKS01000091 208 0
JFKS01000109 208 0
JFKS01000005 207 0
JFKS01000089 207 0
JFKS01000073 204 0
JFKS01000180 203 0
JFKS01000179 203 0
JFKS01000159 202 0
JFKS01000070 202 0
JFKS01000122 201 0
JFKS01000174 201 0
JFKS01000140 201 0
JFKS01000095 201 0
JFKS01000187 201 0
JFKS01000178 200 0
Total 489,145 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634655.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634655.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634655.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634655.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634655.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634655.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634655.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634655.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634655.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634655.1/genes/interpro.txt (File format)

MicrobeBase