cyanobase » Prochlorococcus sp. scB245a_520M11

Prochlorococcus sp. scB245a_520M11

Summary

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Data source name GCA_000634535.1
Full name Prochlorococcus sp. scB245a_520M11 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNV01000064 129,018 0
JFNV01000007 76,115 0
JFNV01000027 36,795 0
JFNV01000004 23,259 0
JFNV01000062 20,284 0
JFNV01000005 16,374 0
JFNV01000073 12,863 0
JFNV01000009 9,225 0
JFNV01000063 8,503 0
JFNV01000061 7,122 0
JFNV01000043 5,413 0
JFNV01000055 5,218 0
JFNV01000006 3,925 0
JFNV01000054 3,860 0
JFNV01000044 3,364 0
JFNV01000076 2,898 0
JFNV01000032 2,417 0
JFNV01000039 2,336 0
JFNV01000038 1,668 0
JFNV01000074 1,620 0
JFNV01000003 1,617 0
JFNV01000052 1,539 0
JFNV01000075 1,346 0
JFNV01000050 978 0
JFNV01000026 966 0
JFNV01000047 950 0
JFNV01000079 940 0
JFNV01000028 907 0
JFNV01000080 854 0
JFNV01000078 786 0
JFNV01000040 730 0
JFNV01000077 720 0
JFNV01000051 716 0
JFNV01000041 676 0
JFNV01000071 651 0
JFNV01000034 568 0
JFNV01000046 544 0
JFNV01000053 535 0
JFNV01000016 520 0
JFNV01000057 502 0
JFNV01000049 501 0
JFNV01000045 499 0
JFNV01000048 443 0
JFNV01000042 432 0
JFNV01000031 396 0
JFNV01000015 376 0
JFNV01000059 376 0
JFNV01000067 372 0
JFNV01000065 360 0
JFNV01000021 343 0
JFNV01000060 337 0
JFNV01000011 328 0
JFNV01000030 316 0
JFNV01000035 304 0
JFNV01000024 304 0
JFNV01000017 282 0
JFNV01000066 267 0
JFNV01000023 258 0
JFNV01000033 257 0
JFNV01000058 253 0
JFNV01000072 252 0
JFNV01000008 251 0
JFNV01000069 250 0
JFNV01000029 239 0
JFNV01000068 231 0
JFNV01000013 230 0
JFNV01000010 227 0
JFNV01000025 224 0
JFNV01000019 223 0
JFNV01000070 220 0
JFNV01000022 220 0
JFNV01000012 217 0
JFNV01000037 217 0
JFNV01000001 216 0
JFNV01000056 213 0
JFNV01000014 211 0
JFNV01000018 211 0
JFNV01000020 207 0
JFNV01000036 203 0
JFNV01000081 203 0
JFNV01000002 184 0
Total 400,975 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634535.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634535.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634535.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634535.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634535.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634535.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634535.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634535.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634535.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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