cyanobase » Prochlorococcus sp. scB245a_520D2

Prochlorococcus sp. scB245a_520D2

Summary

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Data source name GCA_000634495.1
Full name Prochlorococcus sp. scB245a_520D2 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNR01000259 169,930 0
JFNR01000182 99,053 0
JFNR01000265 97,506 0
JFNR01000272 93,304 0
JFNR01000247 78,414 0
JFNR01000283 51,017 0
JFNR01000037 39,620 0
JFNR01000256 35,366 0
JFNR01000248 32,716 0
JFNR01000154 31,468 0
JFNR01000058 16,977 0
JFNR01000056 16,633 0
JFNR01000155 13,465 0
JFNR01000263 10,342 0
JFNR01000246 9,459 0
JFNR01000271 8,925 0
JFNR01000266 8,293 0
JFNR01000273 7,110 0
JFNR01000270 6,376 0
JFNR01000268 6,239 0
JFNR01000267 5,975 0
JFNR01000249 4,842 0
JFNR01000001 4,644 0
JFNR01000091 4,334 0
JFNR01000038 3,963 0
JFNR01000275 3,685 0
JFNR01000183 3,650 0
JFNR01000120 3,490 0
JFNR01000208 3,486 0
JFNR01000209 3,231 0
JFNR01000171 3,088 0
JFNR01000181 3,069 0
JFNR01000204 3,038 0
JFNR01000211 2,719 0
JFNR01000003 2,658 0
JFNR01000088 2,510 0
JFNR01000060 2,319 0
JFNR01000123 2,304 0
JFNR01000151 2,265 0
JFNR01000059 2,243 0
JFNR01000198 2,197 0
JFNR01000264 1,958 0
JFNR01000137 1,927 0
JFNR01000104 1,907 0
JFNR01000162 1,861 0
JFNR01000057 1,854 0
JFNR01000002 1,763 0
JFNR01000207 1,685 0
JFNR01000108 1,648 0
JFNR01000133 1,547 0
JFNR01000159 1,536 0
JFNR01000107 1,521 0
JFNR01000206 1,440 0
JFNR01000036 1,322 0
JFNR01000128 1,279 0
JFNR01000062 1,127 0
JFNR01000210 1,118 0
JFNR01000257 1,093 0
JFNR01000274 976 0
JFNR01000197 962 0
JFNR01000157 912 0
JFNR01000015 865 0
JFNR01000122 859 0
JFNR01000126 855 0
JFNR01000166 832 0
JFNR01000203 829 0
JFNR01000131 812 0
JFNR01000139 810 0
JFNR01000055 807 0
JFNR01000109 799 0
JFNR01000061 798 0
JFNR01000065 797 0
JFNR01000089 779 0
JFNR01000035 771 0
JFNR01000095 756 0
JFNR01000047 750 0
JFNR01000098 743 0
JFNR01000180 740 0
JFNR01000039 731 0
JFNR01000127 717 0
JFNR01000117 707 0
JFNR01000100 681 0
JFNR01000195 680 0
JFNR01000097 671 0
JFNR01000140 668 0
JFNR01000250 662 0
JFNR01000168 653 0
JFNR01000101 645 0
JFNR01000066 635 0
JFNR01000083 625 0
JFNR01000070 624 0
JFNR01000150 620 0
JFNR01000173 607 0
JFNR01000156 605 0
JFNR01000187 597 0
JFNR01000110 595 0
JFNR01000029 594 0
JFNR01000051 591 0
JFNR01000226 591 0
JFNR01000124 585 0
JFNR01000096 583 0
JFNR01000169 579 0
JFNR01000142 578 0
JFNR01000132 567 0
JFNR01000190 565 0
JFNR01000199 560 0
JFNR01000054 559 0
JFNR01000152 558 0
JFNR01000084 557 0
JFNR01000212 552 0
JFNR01000153 549 0
JFNR01000078 534 0
JFNR01000192 532 0
JFNR01000077 521 0
JFNR01000201 513 0
JFNR01000090 513 0
JFNR01000288 512 0
JFNR01000129 507 0
JFNR01000087 506 0
JFNR01000222 505 0
JFNR01000099 502 0
JFNR01000276 494 0
JFNR01000125 491 0
JFNR01000072 487 0
JFNR01000205 485 0
JFNR01000287 477 0
JFNR01000093 477 0
JFNR01000079 472 0
JFNR01000144 467 0
JFNR01000006 464 0
JFNR01000252 453 0
JFNR01000164 442 0
JFNR01000115 436 0
JFNR01000251 425 0
JFNR01000121 418 0
JFNR01000080 416 0
JFNR01000161 415 0
JFNR01000194 412 0
JFNR01000106 411 0
JFNR01000227 405 0
JFNR01000258 402 0
JFNR01000193 402 0
JFNR01000085 392 0
JFNR01000074 391 0
JFNR01000134 389 0
JFNR01000143 386 0
JFNR01000050 384 0
JFNR01000191 383 0
JFNR01000167 378 0
JFNR01000075 378 0
JFNR01000235 373 0
JFNR01000053 372 0
JFNR01000041 372 0
JFNR01000012 371 0
JFNR01000103 370 0
JFNR01000279 369 0
JFNR01000010 368 0
JFNR01000073 367 0
JFNR01000177 364 0
JFNR01000230 364 0
JFNR01000175 364 0
JFNR01000105 361 0
JFNR01000026 360 0
JFNR01000146 347 0
JFNR01000023 339 0
JFNR01000092 337 0
JFNR01000241 330 0
JFNR01000044 329 0
JFNR01000225 326 0
JFNR01000040 321 0
JFNR01000184 318 0
JFNR01000188 316 0
JFNR01000136 315 0
JFNR01000094 314 0
JFNR01000045 314 0
JFNR01000231 314 0
JFNR01000280 313 0
JFNR01000042 313 0
JFNR01000149 311 0
JFNR01000163 308 0
JFNR01000229 307 0
JFNR01000240 306 0
JFNR01000020 304 0
JFNR01000119 300 0
JFNR01000286 299 0
JFNR01000064 299 0
JFNR01000233 298 0
JFNR01000179 296 0
JFNR01000071 294 0
JFNR01000004 294 0
JFNR01000043 289 0
JFNR01000046 288 0
JFNR01000189 287 0
JFNR01000260 285 0
JFNR01000082 283 0
JFNR01000081 283 0
JFNR01000102 282 0
JFNR01000005 282 0
JFNR01000111 281 0
JFNR01000022 281 0
JFNR01000290 281 0
JFNR01000069 276 0
JFNR01000269 274 0
JFNR01000237 274 0
JFNR01000017 270 0
JFNR01000281 265 0
JFNR01000063 263 0
JFNR01000218 260 0
JFNR01000236 260 0
JFNR01000213 260 0
JFNR01000130 259 0
JFNR01000016 258 0
JFNR01000200 258 0
JFNR01000176 256 0
JFNR01000239 255 0
JFNR01000228 254 0
JFNR01000277 253 0
JFNR01000220 253 0
JFNR01000011 252 0
JFNR01000232 252 0
JFNR01000067 251 0
JFNR01000013 250 0
JFNR01000278 249 0
JFNR01000196 248 0
JFNR01000052 247 0
JFNR01000024 246 0
JFNR01000216 245 0
JFNR01000160 244 0
JFNR01000219 243 0
JFNR01000224 243 0
JFNR01000217 243 0
JFNR01000282 241 0
JFNR01000289 240 0
JFNR01000261 239 0
JFNR01000019 237 0
JFNR01000032 237 0
JFNR01000178 236 0
JFNR01000172 236 0
JFNR01000034 236 0
JFNR01000028 235 0
JFNR01000145 235 0
JFNR01000223 233 0
JFNR01000018 233 0
JFNR01000009 230 0
JFNR01000165 229 0
JFNR01000148 228 0
JFNR01000141 227 0
JFNR01000049 227 0
JFNR01000114 226 0
JFNR01000118 226 0
JFNR01000174 226 0
JFNR01000027 225 0
JFNR01000116 225 0
JFNR01000242 224 0
JFNR01000021 222 0
JFNR01000007 222 0
JFNR01000284 221 0
JFNR01000185 221 0
JFNR01000186 220 0
JFNR01000033 220 0
JFNR01000086 220 0
JFNR01000254 219 0
JFNR01000113 218 0
JFNR01000112 218 0
JFNR01000147 217 0
JFNR01000255 217 0
JFNR01000025 216 0
JFNR01000158 216 0
JFNR01000221 216 0
JFNR01000135 216 0
JFNR01000245 215 0
JFNR01000076 215 0
JFNR01000008 213 0
JFNR01000202 211 0
JFNR01000253 211 0
JFNR01000285 211 0
JFNR01000068 211 0
JFNR01000244 210 0
JFNR01000170 209 0
JFNR01000262 208 0
JFNR01000238 208 0
JFNR01000243 207 0
JFNR01000031 207 0
JFNR01000234 207 0
JFNR01000014 206 0
JFNR01000048 205 0
JFNR01000215 203 0
JFNR01000030 201 0
JFNR01000214 201 0
JFNR01000138 200 0
Total 1,019,838 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634495.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634495.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634495.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634495.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634495.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634495.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634495.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634495.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634495.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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