cyanobase » Prochlorococcus sp. scB243_496A2

Prochlorococcus sp. scB243_496A2

Summary

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Data source name GCA_000634255.1
Full name Prochlorococcus sp. scB243_496A2 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMC01000152 258,826 0
JFMC01000002 190,967 0
JFMC01000001 154,124 0
JFMC01000005 83,961 0
JFMC01000028 83,207 0
JFMC01000206 63,410 0
JFMC01000200 52,531 0
JFMC01000158 51,157 0
JFMC01000044 33,529 0
JFMC01000164 33,322 0
JFMC01000023 28,788 0
JFMC01000027 26,136 0
JFMC01000144 23,834 0
JFMC01000151 17,006 0
JFMC01000180 14,558 0
JFMC01000156 14,080 0
JFMC01000209 13,311 0
JFMC01000201 12,379 0
JFMC01000003 11,760 0
JFMC01000146 9,559 0
JFMC01000160 9,507 0
JFMC01000054 8,671 0
JFMC01000033 8,185 0
JFMC01000205 8,082 0
JFMC01000004 7,662 0
JFMC01000204 7,081 0
JFMC01000037 6,790 0
JFMC01000165 6,616 0
JFMC01000203 5,837 0
JFMC01000163 5,737 0
JFMC01000207 5,328 0
JFMC01000038 5,150 0
JFMC01000222 5,061 0
JFMC01000161 4,998 0
JFMC01000199 4,539 0
JFMC01000022 4,169 0
JFMC01000150 3,957 0
JFMC01000149 3,927 0
JFMC01000171 3,631 0
JFMC01000162 3,531 0
JFMC01000176 3,494 0
JFMC01000020 2,915 0
JFMC01000035 2,832 0
JFMC01000148 2,795 0
JFMC01000175 2,686 0
JFMC01000159 2,683 0
JFMC01000177 2,481 0
JFMC01000181 2,450 0
JFMC01000031 2,432 0
JFMC01000112 2,356 0
JFMC01000223 2,298 0
JFMC01000036 2,257 0
JFMC01000013 2,129 0
JFMC01000073 2,060 0
JFMC01000019 2,027 0
JFMC01000147 1,917 0
JFMC01000016 1,814 0
JFMC01000202 1,770 0
JFMC01000145 1,687 0
JFMC01000111 1,639 0
JFMC01000238 1,623 0
JFMC01000224 1,582 0
JFMC01000012 1,553 0
JFMC01000030 1,394 0
JFMC01000110 1,392 0
JFMC01000155 1,372 0
JFMC01000039 1,281 0
JFMC01000225 1,265 0
JFMC01000168 1,258 0
JFMC01000094 1,221 0
JFMC01000032 1,208 0
JFMC01000025 1,146 0
JFMC01000240 1,145 0
JFMC01000041 1,141 0
JFMC01000194 1,132 0
JFMC01000070 1,117 0
JFMC01000198 1,112 0
JFMC01000056 1,083 0
JFMC01000178 1,071 0
JFMC01000017 1,060 0
JFMC01000157 1,044 0
JFMC01000018 1,034 0
JFMC01000009 1,007 0
JFMC01000166 1,001 0
JFMC01000090 991 0
JFMC01000061 981 0
JFMC01000011 968 0
JFMC01000210 962 0
JFMC01000047 927 0
JFMC01000085 914 0
JFMC01000014 896 0
JFMC01000174 842 0
JFMC01000065 835 0
JFMC01000051 820 0
JFMC01000227 819 0
JFMC01000049 811 0
JFMC01000069 792 0
JFMC01000183 780 0
JFMC01000169 762 0
JFMC01000179 759 0
JFMC01000040 742 0
JFMC01000072 736 0
JFMC01000062 710 0
JFMC01000077 705 0
JFMC01000034 698 0
JFMC01000233 690 0
JFMC01000057 688 0
JFMC01000212 687 0
JFMC01000173 683 0
JFMC01000083 681 0
JFMC01000189 670 0
JFMC01000021 669 0
JFMC01000029 668 0
JFMC01000053 638 0
JFMC01000187 629 0
JFMC01000087 629 0
JFMC01000089 627 0
JFMC01000241 627 0
JFMC01000143 618 0
JFMC01000015 615 0
JFMC01000088 614 0
JFMC01000052 603 0
JFMC01000118 597 0
JFMC01000123 595 0
JFMC01000172 587 0
JFMC01000170 580 0
JFMC01000063 578 0
JFMC01000138 576 0
JFMC01000084 569 0
JFMC01000186 566 0
JFMC01000092 564 0
JFMC01000105 559 0
JFMC01000045 557 0
JFMC01000095 527 0
JFMC01000071 526 0
JFMC01000136 525 0
JFMC01000066 523 0
JFMC01000153 513 0
JFMC01000099 512 0
JFMC01000064 503 0
JFMC01000226 499 0
JFMC01000093 482 0
JFMC01000190 478 0
JFMC01000196 470 0
JFMC01000010 456 0
JFMC01000140 450 0
JFMC01000058 443 0
JFMC01000101 440 0
JFMC01000068 432 0
JFMC01000139 430 0
JFMC01000242 429 0
JFMC01000235 418 0
JFMC01000234 412 0
JFMC01000133 407 0
JFMC01000114 406 0
JFMC01000059 403 0
JFMC01000141 401 0
JFMC01000229 400 0
JFMC01000086 388 0
JFMC01000197 383 0
JFMC01000167 376 0
JFMC01000142 369 0
JFMC01000109 367 0
JFMC01000115 366 0
JFMC01000060 359 0
JFMC01000055 359 0
JFMC01000026 350 0
JFMC01000127 350 0
JFMC01000230 347 0
JFMC01000096 347 0
JFMC01000024 341 0
JFMC01000081 340 0
JFMC01000236 338 0
JFMC01000108 322 0
JFMC01000217 322 0
JFMC01000182 319 0
JFMC01000208 318 0
JFMC01000102 318 0
JFMC01000154 313 0
JFMC01000237 313 0
JFMC01000117 308 0
JFMC01000231 305 0
JFMC01000106 301 0
JFMC01000076 296 0
JFMC01000211 293 0
JFMC01000184 293 0
JFMC01000193 286 0
JFMC01000192 283 0
JFMC01000232 282 0
JFMC01000113 280 0
JFMC01000239 278 0
JFMC01000121 277 0
JFMC01000006 275 0
JFMC01000135 273 0
JFMC01000130 272 0
JFMC01000098 270 0
JFMC01000082 268 0
JFMC01000075 268 0
JFMC01000125 266 0
JFMC01000191 264 0
JFMC01000129 260 0
JFMC01000228 260 0
JFMC01000134 257 0
JFMC01000074 257 0
JFMC01000100 256 0
JFMC01000120 254 0
JFMC01000215 252 0
JFMC01000091 251 0
JFMC01000103 245 0
JFMC01000079 244 0
JFMC01000188 243 0
JFMC01000128 242 0
JFMC01000219 242 0
JFMC01000124 241 0
JFMC01000195 236 0
JFMC01000185 236 0
JFMC01000008 233 0
JFMC01000126 229 0
JFMC01000116 228 0
JFMC01000007 225 0
JFMC01000218 224 0
JFMC01000050 224 0
JFMC01000046 222 0
JFMC01000067 222 0
JFMC01000131 221 0
JFMC01000220 217 0
JFMC01000137 214 0
JFMC01000122 213 0
JFMC01000078 213 0
JFMC01000214 213 0
JFMC01000221 212 0
JFMC01000119 209 0
JFMC01000213 208 0
JFMC01000042 207 0
JFMC01000132 207 0
JFMC01000080 205 0
JFMC01000216 202 0
JFMC01000107 202 0
JFMC01000043 201 0
JFMC01000097 201 0
JFMC01000048 200 0
JFMC01000104 200 0
Total 1,439,938 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634255.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634255.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634255.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634255.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634255.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634255.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634255.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634255.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634255.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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