cyanobase » Prochlorococcus sp. scB241_528P14

Prochlorococcus sp. scB241_528P14

Summary

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Data source name GCA_000634135.1
Full name Prochlorococcus sp. scB241_528P14 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLK01000127 346,589 0
JFLK01000150 158,770 0
JFLK01000009 98,799 0
JFLK01000125 90,029 0
JFLK01000008 51,650 0
JFLK01000151 41,373 0
JFLK01000126 33,572 0
JFLK01000135 31,700 0
JFLK01000139 24,247 0
JFLK01000186 23,124 0
JFLK01000137 12,151 0
JFLK01000190 9,727 0
JFLK01000138 8,935 0
JFLK01000134 8,436 0
JFLK01000185 8,141 0
JFLK01000006 6,967 0
JFLK01000124 6,525 0
JFLK01000007 5,999 0
JFLK01000220 4,267 0
JFLK01000121 4,266 0
JFLK01000128 3,615 0
JFLK01000273 3,347 0
JFLK01000268 3,130 0
JFLK01000222 2,999 0
JFLK01000230 2,601 0
JFLK01000075 2,563 0
JFLK01000274 2,214 0
JFLK01000078 1,875 0
JFLK01000194 1,861 0
JFLK01000053 1,793 0
JFLK01000098 1,771 0
JFLK01000010 1,650 0
JFLK01000221 1,435 0
JFLK01000152 1,344 0
JFLK01000130 1,319 0
JFLK01000228 1,143 0
JFLK01000047 1,073 0
JFLK01000231 1,046 0
JFLK01000195 1,044 0
JFLK01000272 1,027 0
JFLK01000227 1,011 0
JFLK01000184 989 0
JFLK01000187 986 0
JFLK01000275 984 0
JFLK01000088 954 0
JFLK01000229 915 0
JFLK01000055 878 0
JFLK01000238 874 0
JFLK01000044 830 0
JFLK01000164 826 0
JFLK01000136 816 0
JFLK01000058 815 0
JFLK01000261 728 0
JFLK01000076 712 0
JFLK01000005 702 0
JFLK01000225 690 0
JFLK01000100 689 0
JFLK01000086 682 0
JFLK01000188 679 0
JFLK01000205 676 0
JFLK01000224 669 0
JFLK01000226 649 0
JFLK01000004 643 0
JFLK01000097 639 0
JFLK01000087 636 0
JFLK01000149 596 0
JFLK01000216 585 0
JFLK01000256 584 0
JFLK01000120 579 0
JFLK01000035 572 0
JFLK01000099 570 0
JFLK01000244 564 0
JFLK01000154 556 0
JFLK01000197 550 0
JFLK01000191 544 0
JFLK01000233 543 0
JFLK01000166 539 0
JFLK01000112 539 0
JFLK01000144 538 0
JFLK01000119 534 0
JFLK01000237 532 0
JFLK01000183 529 0
JFLK01000148 526 0
JFLK01000252 511 0
JFLK01000045 511 0
JFLK01000040 509 0
JFLK01000109 503 0
JFLK01000122 501 0
JFLK01000018 499 0
JFLK01000143 498 0
JFLK01000085 498 0
JFLK01000056 497 0
JFLK01000241 491 0
JFLK01000110 490 0
JFLK01000249 478 0
JFLK01000219 474 0
JFLK01000074 471 0
JFLK01000254 470 0
JFLK01000218 468 0
JFLK01000051 468 0
JFLK01000193 464 0
JFLK01000196 463 0
JFLK01000089 461 0
JFLK01000165 459 0
JFLK01000156 448 0
JFLK01000030 441 0
JFLK01000092 440 0
JFLK01000093 439 0
JFLK01000048 437 0
JFLK01000201 434 0
JFLK01000041 432 0
JFLK01000090 422 0
JFLK01000181 417 0
JFLK01000248 417 0
JFLK01000023 409 0
JFLK01000140 404 0
JFLK01000012 401 0
JFLK01000177 401 0
JFLK01000161 397 0
JFLK01000079 395 0
JFLK01000171 392 0
JFLK01000111 382 0
JFLK01000253 380 0
JFLK01000106 379 0
JFLK01000065 378 0
JFLK01000173 375 0
JFLK01000147 372 0
JFLK01000180 371 0
JFLK01000064 364 0
JFLK01000211 362 0
JFLK01000240 360 0
JFLK01000155 359 0
JFLK01000129 357 0
JFLK01000116 357 0
JFLK01000242 355 0
JFLK01000255 352 0
JFLK01000050 351 0
JFLK01000070 350 0
JFLK01000049 350 0
JFLK01000234 350 0
JFLK01000033 347 0
JFLK01000210 346 0
JFLK01000192 346 0
JFLK01000034 344 0
JFLK01000159 341 0
JFLK01000172 340 0
JFLK01000066 339 0
JFLK01000270 338 0
JFLK01000081 338 0
JFLK01000001 337 0
JFLK01000236 337 0
JFLK01000096 337 0
JFLK01000071 336 0
JFLK01000223 333 0
JFLK01000054 330 0
JFLK01000061 329 0
JFLK01000059 325 0
JFLK01000179 317 0
JFLK01000208 317 0
JFLK01000178 315 0
JFLK01000169 312 0
JFLK01000057 310 0
JFLK01000117 306 0
JFLK01000114 303 0
JFLK01000260 301 0
JFLK01000168 299 0
JFLK01000142 295 0
JFLK01000146 295 0
JFLK01000021 293 0
JFLK01000279 291 0
JFLK01000269 291 0
JFLK01000103 289 0
JFLK01000069 288 0
JFLK01000153 287 0
JFLK01000281 285 0
JFLK01000036 284 0
JFLK01000063 283 0
JFLK01000247 282 0
JFLK01000207 281 0
JFLK01000264 281 0
JFLK01000105 281 0
JFLK01000200 281 0
JFLK01000131 281 0
JFLK01000011 279 0
JFLK01000017 279 0
JFLK01000217 278 0
JFLK01000032 277 0
JFLK01000259 277 0
JFLK01000263 276 0
JFLK01000243 275 0
JFLK01000077 275 0
JFLK01000235 273 0
JFLK01000080 273 0
JFLK01000206 269 0
JFLK01000002 268 0
JFLK01000145 265 0
JFLK01000083 265 0
JFLK01000014 262 0
JFLK01000062 262 0
JFLK01000024 260 0
JFLK01000158 259 0
JFLK01000025 258 0
JFLK01000262 258 0
JFLK01000232 258 0
JFLK01000174 257 0
JFLK01000060 257 0
JFLK01000115 255 0
JFLK01000157 253 0
JFLK01000250 253 0
JFLK01000245 252 0
JFLK01000027 250 0
JFLK01000133 249 0
JFLK01000102 248 0
JFLK01000020 244 0
JFLK01000108 244 0
JFLK01000202 242 0
JFLK01000214 240 0
JFLK01000052 239 0
JFLK01000175 238 0
JFLK01000132 237 0
JFLK01000015 237 0
JFLK01000101 235 0
JFLK01000182 235 0
JFLK01000104 235 0
JFLK01000026 234 0
JFLK01000267 234 0
JFLK01000212 234 0
JFLK01000031 230 0
JFLK01000160 228 0
JFLK01000189 226 0
JFLK01000068 225 0
JFLK01000141 225 0
JFLK01000072 224 0
JFLK01000043 224 0
JFLK01000016 223 0
JFLK01000198 223 0
JFLK01000082 222 0
JFLK01000246 221 0
JFLK01000167 221 0
JFLK01000107 221 0
JFLK01000118 221 0
JFLK01000163 220 0
JFLK01000037 219 0
JFLK01000028 219 0
JFLK01000029 219 0
JFLK01000003 219 0
JFLK01000280 218 0
JFLK01000266 217 0
JFLK01000022 216 0
JFLK01000039 216 0
JFLK01000019 215 0
JFLK01000162 214 0
JFLK01000215 214 0
JFLK01000209 213 0
JFLK01000239 213 0
JFLK01000258 212 0
JFLK01000046 211 0
JFLK01000277 210 0
JFLK01000095 210 0
JFLK01000067 210 0
JFLK01000013 210 0
JFLK01000257 208 0
JFLK01000176 208 0
JFLK01000271 208 0
JFLK01000276 208 0
JFLK01000199 207 0
JFLK01000042 206 0
JFLK01000094 206 0
JFLK01000203 205 0
JFLK01000123 205 0
JFLK01000113 203 0
JFLK01000204 203 0
JFLK01000170 203 0
JFLK01000213 203 0
JFLK01000084 202 0
JFLK01000251 202 0
JFLK01000038 202 0
JFLK01000073 202 0
JFLK01000091 201 0
JFLK01000265 201 0
JFLK01000278 200 0
Total 1,104,134 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634135.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634135.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634135.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634135.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634135.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634135.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634135.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634135.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634135.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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