cyanobase » Prochlorococcus sp. scB241_526N9

Prochlorococcus sp. scB241_526N9

Summary

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Data source name GCA_000634015.1
Full name Prochlorococcus sp. scB241_526N9 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKT01000053 128,052 0
JFKT01000096 106,742 0
JFKT01000149 101,848 0
JFKT01000092 101,456 0
JFKT01000050 100,005 0
JFKT01000104 82,490 0
JFKT01000094 76,651 0
JFKT01000093 59,779 0
JFKT01000126 50,579 0
JFKT01000010 32,846 0
JFKT01000090 30,069 0
JFKT01000103 26,926 0
JFKT01000095 25,541 0
JFKT01000098 25,302 0
JFKT01000048 25,009 0
JFKT01000099 22,372 0
JFKT01000121 20,095 0
JFKT01000005 18,671 0
JFKT01000077 18,252 0
JFKT01000003 16,128 0
JFKT01000049 15,118 0
JFKT01000001 14,928 0
JFKT01000004 11,712 0
JFKT01000047 10,361 0
JFKT01000075 9,905 0
JFKT01000002 9,532 0
JFKT01000091 7,537 0
JFKT01000060 7,412 0
JFKT01000150 6,788 0
JFKT01000051 6,643 0
JFKT01000101 5,437 0
JFKT01000052 4,907 0
JFKT01000024 4,288 0
JFKT01000123 3,458 0
JFKT01000033 2,967 0
JFKT01000023 2,895 0
JFKT01000025 2,550 0
JFKT01000009 2,495 0
JFKT01000088 2,486 0
JFKT01000102 2,470 0
JFKT01000059 2,287 0
JFKT01000157 1,936 0
JFKT01000100 1,847 0
JFKT01000032 1,718 0
JFKT01000156 1,635 0
JFKT01000031 1,622 0
JFKT01000026 1,548 0
JFKT01000135 1,448 0
JFKT01000078 1,368 0
JFKT01000113 1,151 0
JFKT01000045 1,109 0
JFKT01000136 1,061 0
JFKT01000069 1,042 0
JFKT01000166 1,009 0
JFKT01000034 983 0
JFKT01000086 974 0
JFKT01000076 928 0
JFKT01000027 921 0
JFKT01000172 868 0
JFKT01000114 816 0
JFKT01000030 788 0
JFKT01000068 770 0
JFKT01000125 757 0
JFKT01000089 754 0
JFKT01000066 748 0
JFKT01000013 740 0
JFKT01000143 707 0
JFKT01000029 678 0
JFKT01000118 664 0
JFKT01000163 637 0
JFKT01000043 620 0
JFKT01000138 614 0
JFKT01000120 609 0
JFKT01000145 604 0
JFKT01000019 596 0
JFKT01000041 584 0
JFKT01000153 559 0
JFKT01000070 544 0
JFKT01000011 537 0
JFKT01000167 522 0
JFKT01000081 512 0
JFKT01000044 503 0
JFKT01000020 498 0
JFKT01000122 496 0
JFKT01000061 493 0
JFKT01000063 465 0
JFKT01000083 462 0
JFKT01000141 459 0
JFKT01000115 458 0
JFKT01000137 451 0
JFKT01000067 449 0
JFKT01000008 448 0
JFKT01000040 442 0
JFKT01000165 440 0
JFKT01000082 433 0
JFKT01000160 426 0
JFKT01000142 417 0
JFKT01000072 416 0
JFKT01000074 401 0
JFKT01000170 395 0
JFKT01000064 384 0
JFKT01000065 381 0
JFKT01000130 379 0
JFKT01000079 377 0
JFKT01000097 371 0
JFKT01000132 366 0
JFKT01000127 366 0
JFKT01000109 365 0
JFKT01000110 363 0
JFKT01000107 355 0
JFKT01000056 354 0
JFKT01000058 354 0
JFKT01000146 344 0
JFKT01000084 340 0
JFKT01000128 334 0
JFKT01000139 324 0
JFKT01000016 322 0
JFKT01000154 317 0
JFKT01000038 316 0
JFKT01000162 313 0
JFKT01000035 312 0
JFKT01000158 311 0
JFKT01000087 309 0
JFKT01000014 302 0
JFKT01000022 298 0
JFKT01000054 297 0
JFKT01000057 294 0
JFKT01000151 290 0
JFKT01000106 288 0
JFKT01000168 284 0
JFKT01000164 284 0
JFKT01000006 282 0
JFKT01000015 275 0
JFKT01000108 274 0
JFKT01000062 272 0
JFKT01000018 268 0
JFKT01000080 263 0
JFKT01000173 262 0
JFKT01000042 258 0
JFKT01000148 257 0
JFKT01000169 256 0
JFKT01000171 253 0
JFKT01000085 253 0
JFKT01000152 253 0
JFKT01000112 248 0
JFKT01000021 247 0
JFKT01000071 242 0
JFKT01000117 241 0
JFKT01000147 241 0
JFKT01000129 240 0
JFKT01000116 239 0
JFKT01000007 239 0
JFKT01000133 235 0
JFKT01000073 234 0
JFKT01000140 229 0
JFKT01000119 227 0
JFKT01000155 223 0
JFKT01000134 222 0
JFKT01000161 217 0
JFKT01000012 216 0
JFKT01000159 215 0
JFKT01000039 215 0
JFKT01000055 213 0
JFKT01000131 210 0
JFKT01000037 210 0
JFKT01000036 210 0
JFKT01000144 209 0
JFKT01000105 208 0
JFKT01000017 207 0
JFKT01000028 202 0
JFKT01000046 202 0
JFKT01000111 201 0
JFKT01000124 201 0
Total 1,271,232 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634015.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634015.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634015.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634015.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634015.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634015.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634015.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634015.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634015.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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