cyanobase » Aphanizomenon flos-aquae NIES-81

Aphanizomenon flos-aquae NIES-81

Summary

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Data source name GCA_000521175.1
Full name Aphanizomenon flos-aquae NIES-81 External
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.

Genome Information

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Chromosomes
Name Size (bp) Genes
KI928192 2,605,121 0
KI928193 1,857,322 0
KI928194 1,235,933 0
KI928195 80,690 0
AZYY01000240 10,740 0
AZYY01000241 2,791 0
AZYY01000242 2,546 0
AZYY01000243 2,414 0
AZYY01000244 2,403 0
AZYY01000245 2,208 0
AZYY01000246 2,180 0
AZYY01000247 2,097 0
AZYY01000248 1,882 0
AZYY01000249 1,843 0
AZYY01000250 1,648 0
AZYY01000251 1,413 0
AZYY01000252 1,395 0
AZYY01000253 1,230 0
AZYY01000254 1,148 0
AZYY01000255 1,114 0
AZYY01000256 1,100 0
AZYY01000257 939 0
AZYY01000258 938 0
AZYY01000259 910 0
AZYY01000260 834 0
AZYY01000261 804 0
AZYY01000262 783 0
AZYY01000263 755 0
AZYY01000264 753 0
AZYY01000265 695 0
AZYY01000266 672 0
AZYY01000267 622 0
AZYY01000268 578 0
AZYY01000269 566 0
AZYY01000270 566 0
AZYY01000271 559 0
AZYY01000272 553 0
AZYY01000273 506 0
AZYY01000274 498 0
AZYY01000275 497 0
AZYY01000276 483 0
AZYY01000277 460 0
AZYY01000278 450 0
AZYY01000279 434 0
AZYY01000281 422 0
AZYY01000280 421 0
AZYY01000282 418 0
AZYY01000283 400 0
AZYY01000284 395 0
AZYY01000285 374 0
AZYY01000286 371 0
AZYY01000287 366 0
AZYY01000288 366 0
AZYY01000289 365 0
AZYY01000290 352 0
AZYY01000291 343 0
AZYY01000292 341 0
AZYY01000293 338 0
AZYY01000294 337 0
AZYY01000295 335 0
AZYY01000296 329 0
AZYY01000298 322 0
AZYY01000297 321 0
AZYY01000299 314 0
AZYY01000300 311 0
AZYY01000301 305 0
AZYY01000302 303 0
AZYY01000303 299 0
AZYY01000304 295 0
AZYY01000305 292 0
AZYY01000306 288 0
AZYY01000307 284 0
AZYY01000308 283 0
AZYY01000310 279 0
AZYY01000309 278 0
AZYY01000311 277 0
AZYY01000312 276 0
AZYY01000313 273 0
AZYY01000314 265 0
AZYY01000316 265 0
AZYY01000315 265 0
AZYY01000317 261 0
AZYY01000318 258 0
AZYY01000319 256 0
AZYY01000320 252 0
AZYY01000322 251 0
AZYY01000321 251 0
AZYY01000323 248 0
AZYY01000324 244 0
AZYY01000325 243 0
AZYY01000326 234 0
AZYY01000327 232 0
AZYY01000329 231 0
AZYY01000328 229 0
AZYY01000330 229 0
AZYY01000331 226 0
AZYY01000332 222 0
AZYY01000333 220 0
AZYY01000335 218 0
AZYY01000334 213 0
AZYY01000336 213 0
AZYY01000337 203 0
AZYY01000338 200 0
Total 5,851,275 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000521175.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000521175.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000521175.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000521175.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000521175.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000521175.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000521175.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000521175.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000521175.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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