cyanobase » Microcystis aeruginosa PCC 7941

Microcystis aeruginosa PCC 7941

Summary

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Data source name GCA_000312205.1
Full name Microcystis aeruginosa PCC 7941 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.

Genome Information

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Chromosomes
Name Size (bp) Genes
HE973164 498,496 420
HE973143 432,165 419
HE973169 363,096 322
HE973171 349,311 356
HE973155 294,732 305
HE973167 291,456 288
HE973168 287,240 297
HE973165 278,715 261
HE973163 273,974 268
HE973144 143,801 137
HE973154 142,309 138
HE973156 126,879 106
HE973161 125,029 111
HE973162 124,154 108
HE973172 108,221 118
HE973151 104,670 109
HE973148 104,095 99
HE973147 93,296 92
HE973146 92,187 87
HE973166 91,826 100
HE973145 83,205 64
HE973157 66,470 75
HE973170 50,865 41
HE973158 47,457 40
HE973150 46,742 47
HE973160 40,803 29
HE973149 39,701 42
HE973152 37,470 39
HE973159 10,290 11
HE973153 9,779 16
HE973187 1,602 3
HE973208 1,575 1
HE973207 1,442 1
HE973185 1,385 2
HE973213 1,342 2
HE973177 1,263 0
HE973204 1,240 1
HE973174 1,231 0
HE973190 1,217 2
HE973175 1,125 0
HE973211 1,119 2
HE973198 1,117 0
HE973189 1,092 1
HE973196 1,077 1
HE973218 1,058 0
HE973214 1,050 1
HE973192 1,040 1
HE973180 1,025 2
HE973194 982 0
HE973178 951 0
HE973195 944 1
HE973206 933 1
HE973202 896 1
HE973215 854 2
HE973188 844 0
HE973182 811 1
HE973216 789 0
HE973173 781 1
HE973197 752 0
HE973184 735 0
HE973212 732 0
HE973203 730 0
HE973200 725 0
HE973193 716 0
HE973199 713 0
HE973183 699 1
HE973176 693 0
HE973186 649 0
HE973205 642 0
HE973209 642 0
HE973217 641 1
HE973201 636 0
HE973191 626 0
HE973179 616 0
HE973181 612 1
HE973210 603 0
HE973219 518 0
Total 4,801,899 4,575
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000312205.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000312205.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000312205.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000312205.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000312205.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000312205.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000312205.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000312205.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000312205.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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