cyanobase » Fischerella sp. JSC-11

Fischerella sp. JSC-11

Summary

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Data source name GCA_000231365.2
Full name Fischerella sp. JSC-11 External
Taxonomy Lineage Cyanobacteria; Stigonematales; Fischerella.

Genome Information

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Chromosomes
Name Size (bp) Genes
AGIZ01000001 603,159 498
AGIZ01000002 467,836 405
AGIZ01000003 444,951 408
AGIZ01000004 439,166 398
AGIZ01000005 428,099 353
AGIZ01000006 392,142 344
AGIZ01000007 356,566 312
AGIZ01000008 306,448 270
AGIZ01000009 263,314 236
AGIZ01000010 253,523 241
AGIZ01000011 222,251 178
AGIZ01000012 215,335 188
AGIZ01000013 176,025 161
AGIZ01000014 169,571 142
AGIZ01000015 130,272 109
AGIZ01000016 120,577 101
AGIZ01000017 118,300 96
AGIZ01000018 76,151 62
AGIZ01000019 60,302 47
AGIZ01000020 55,555 57
AGIZ01000021 40,604 29
AGIZ01000022 17,436 12
AGIZ01000023 9,588 4
AGIZ01000024 4,711 5
AGIZ01000025 2,058 3
AGIZ01000026 921 2
AGIZ01000027 773 2
AGIZ01000028 756 0
AGIZ01000029 672 1
AGIZ01000030 647 1
AGIZ01000031 637 2
AGIZ01000032 585 1
AGIZ01000033 565 1
AGIZ01000034 504 2
Total 5,380,000 4,671
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000231365.2

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000231365.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000231365.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000231365.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000231365.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000231365.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000231365.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000231365.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000231365.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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