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cyanobase » Cylindrospermopsis raciborskii CS-505

Cylindrospermopsis raciborskii CS-505

Summary

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Data source name GCA_000175835.1
Full name Cylindrospermopsis raciborskii CS-505
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermopsis.

Genome Information

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Chromosomes
Name Size (bp) Genes
ACYA01000025 259,538 216
ACYA01000001 212,014 196
ACYA01000047 202,906 208
ACYA01000064 188,609 170
ACYA01000056 184,818 172
ACYA01000002 164,375 147
ACYA01000028 156,817 129
ACYA01000008 128,094 124
ACYA01000027 117,738 83
ACYA01000032 109,110 86
ACYA01000038 108,309 102
ACYA01000007 99,886 103
ACYA01000039 91,518 89
ACYA01000060 88,039 57
ACYA01000022 84,199 69
ACYA01000073 82,896 75
ACYA01000091 81,355 82
ACYA01000074 71,411 72
ACYA01000063 61,218 47
ACYA01000033 60,343 48
ACYA01000026 55,421 53
ACYA01000020 52,573 57
ACYA01000049 49,092 45
ACYA01000023 45,705 38
ACYA01000005 43,501 45
ACYA01000029 43,340 43
ACYA01000087 42,989 49
ACYA01000058 42,165 41
ACYA01000021 35,526 32
ACYA01000061 35,086 26
ACYA01000067 34,341 30
ACYA01000045 33,775 32
ACYA01000071 32,162 31
ACYA01000040 31,899 30
ACYA01000050 31,164 28
ACYA01000018 29,988 31
ACYA01000016 27,721 25
ACYA01000062 25,486 23
ACYA01000051 25,319 26
ACYA01000086 25,199 19
ACYA01000030 23,911 21
ACYA01000057 23,875 24
ACYA01000069 23,264 26
ACYA01000015 22,545 27
ACYA01000031 22,230 21
ACYA01000046 21,951 5
ACYA01000059 20,327 15
ACYA01000070 19,576 18
ACYA01000053 19,190 21
ACYA01000036 16,882 19
ACYA01000024 15,365 12
ACYA01000055 14,678 10
ACYA01000044 14,656 13
ACYA01000079 14,225 14
ACYA01000077 13,765 14
ACYA01000048 12,992 7
ACYA01000012 12,818 8
ACYA01000042 12,687 10
ACYA01000019 12,343 11
ACYA01000006 11,976 11
ACYA01000013 11,930 12
ACYA01000054 11,496 17
ACYA01000003 11,189 6
ACYA01000035 10,838 12
ACYA01000066 10,397 12
ACYA01000092 10,290 9
ACYA01000081 10,000 14
ACYA01000011 9,561 1
ACYA01000082 9,346 12
ACYA01000085 9,169 12
ACYA01000078 8,560 5
ACYA01000090 8,552 11
ACYA01000034 8,220 5
ACYA01000068 7,858 6
ACYA01000083 7,519 5
ACYA01000017 7,368 7
ACYA01000052 6,836 5
ACYA01000037 6,569 6
ACYA01000010 6,401 10
ACYA01000088 6,121 6
ACYA01000080 5,775 4
ACYA01000004 5,677 4
ACYA01000065 4,883 4
ACYA01000075 4,270 0
ACYA01000076 4,205 0
ACYA01000041 4,184 7
ACYA01000089 4,180 5
ACYA01000084 4,111 2
ACYA01000043 3,920 4
ACYA01000093 3,856 3
ACYA01000072 3,798 3
ACYA01000014 3,544 4
ACYA01000009 3,506 1
Total 3,879,030 3,500
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000175835.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000175835.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000175835.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000175835.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000175835.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000175835.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000175835.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000175835.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000175835.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000175835.1/genes/interpro.txt (File format)

MicrobeBase