cyanobase » Coleofasciculus chthonoplastes PCC 7420

Coleofasciculus chthonoplastes PCC 7420

Summary

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Data source name GCA_000155555.1
Full name Coleofasciculus chthonoplastes PCC 7420 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.

Genome Information

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Chromosomes
Name Size (bp) Genes
DS989841 523,263 516
DS989842 519,555 448
DS989843 444,731 385
DS989844 425,655 470
DS989845 405,288 387
DS989846 403,947 393
DS989847 377,946 364
DS989848 303,179 293
DS989849 293,560 284
DS989850 292,153 288
DS989851 276,975 265
DS989852 269,427 257
DS989853 266,072 254
DS989854 249,172 207
DS989855 248,733 252
DS989856 203,233 192
DS989857 196,643 189
DS989858 186,689 168
DS989859 178,286 174
DS989860 177,565 170
DS989861 154,100 162
DS989862 152,063 130
DS989863 151,356 101
DS989864 150,695 143
DS989865 146,442 134
DS989866 140,996 116
DS989867 131,471 124
DS989868 124,743 128
DS989869 119,815 120
DS989870 109,374 116
DS989871 102,547 121
DS989872 99,447 104
DS989873 95,376 90
DS989874 95,189 92
DS989875 92,427 104
DS989876 88,871 83
DS989877 75,907 87
DS989878 72,378 64
DS989879 51,750 49
DS989880 51,422 52
DS989881 35,999 38
DS989882 32,921 38
DS989883 30,592 41
DS989884 28,805 43
DS989885 23,819 31
DS989886 22,039 19
DS989887 12,259 8
DS989888 11,420 13
DS989889 10,600 12
DS989890 7,448 9
DS989891 5,578 7
DS989892 1,938 2
DS989893 1,837 1
DS989894 1,657 2
DS989895 1,364 3
DS989896 1,286 3
DS989897 1,038 1
Total 8,679,041 8,347
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000155555.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000155555.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000155555.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000155555.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000155555.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000155555.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000155555.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000155555.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000155555.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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