cyanobase » Prochlorococcus marinus str. MIT 9322

Prochlorococcus marinus str. MIT 9322

Summary

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Data source name GCA_000760075.1
Full name Prochlorococcus marinus str. MIT 9322
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAQ01000009 557,610 660
JNAQ01000008 367,597 477
JNAQ01000005 315,067 340
JNAQ01000003 214,594 225
JNAQ01000006 73,050 72
JNAQ01000001 35,322 60
JNAQ01000002 33,946 53
JNAQ01000007 33,362 59
JNAQ01000004 15,859 19
JNAQ01000011 5,963 7
JNAQ01000010 5,180 6
Total 1,657,550 1,978
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000760075.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760075.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760075.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760075.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760075.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760075.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760075.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760075.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760075.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760075.1/genes/interpro.txt (File format)

MicrobeBase