cyanobase » Prochlorococcus marinus str. MIT 9321

Prochlorococcus marinus str. MIT 9321

Summary

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Data source name GCA_000760055.1
Full name Prochlorococcus marinus str. MIT 9321
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAP01000010 361,189 462
JNAP01000009 264,609 272
JNAP01000007 259,210 321
JNAP01000004 212,600 266
JNAP01000008 191,383 211
JNAP01000001 107,969 133
JNAP01000002 103,825 110
JNAP01000005 76,922 103
JNAP01000006 66,984 74
JNAP01000003 13,973 23
Total 1,658,664 1,975
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000760055.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760055.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760055.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760055.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760055.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760055.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760055.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760055.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760055.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760055.1/genes/interpro.txt (File format)

MicrobeBase