cyanobase » Prochlorococcus marinus str. MIT 9302

Prochlorococcus marinus str. MIT 9302

Summary

? | +/- | Top
Data source name GCA_000759975.1
Full name Prochlorococcus marinus str. MIT 9302
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JNAM01000011 383,692 473
JNAM01000010 339,761 399
JNAM01000005 242,124 292
JNAM01000006 201,598 204
JNAM01000002 127,413 139
JNAM01000014 98,044 117
JNAM01000007 86,661 91
JNAM01000001 54,524 79
JNAM01000012 50,810 49
JNAM01000008 47,046 59
JNAM01000004 37,121 34
JNAM01000009 30,896 29
JNAM01000003 25,766 46
JNAM01000013 11,383 17
JNAM01000016 5,673 6
JNAM01000017 1,676 1
JNAM01000015 1,155 1
Total 1,745,343 2,036
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2

Resources

? | +/- | Top
About species GCA_000759975.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000759975.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000759975.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000759975.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759975.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759975.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759975.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759975.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759975.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759975.1/genes/interpro.txt (File format)

MicrobeBase