cyanobase » Prochlorococcus marinus str. MIT 9116

Prochlorococcus marinus str. MIT 9116

Summary

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Data source name GCA_000759865.1
Full name Prochlorococcus marinus str. MIT 9116
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAJ01000018 250,154 284
JNAJ01000017 216,306 261
JNAJ01000004 203,351 209
JNAJ01000013 134,814 151
JNAJ01000016 117,620 140
JNAJ01000008 91,266 139
JNAJ01000012 87,753 99
JNAJ01000011 77,584 87
JNAJ01000014 73,821 109
JNAJ01000003 71,200 107
JNAJ01000005 61,814 52
JNAJ01000006 59,353 61
JNAJ01000009 50,796 45
JNAJ01000015 48,081 51
JNAJ01000010 47,017 53
JNAJ01000007 43,203 46
JNAJ01000002 23,665 40
JNAJ01000001 22,291 41
JNAJ01000020 1,486 2
JNAJ01000021 1,369 3
JNAJ01000022 1,231 3
JNAJ01000019 1,223 2
Total 1,685,398 1,985
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000759865.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000759865.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000759865.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000759865.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759865.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759865.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759865.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759865.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759865.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759865.1/genes/interpro.txt (File format)

MicrobeBase