cyanobase » Candidatus Atelocyanobacterium thalassa isolate SIO64986

Candidatus Atelocyanobacterium thalassa isolate SIO64986

Summary

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Data source name GCA_000737945.1
Full name Candidatus Atelocyanobacterium thalassa isolate SIO64986
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Candidatus Atelocyanobacterium.

Genome Information

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Chromosomes
Name Size (bp) Genes
JPSP01000001 249,164 200
JPSP01000002 154,985 128
JPSP01000003 151,741 122
JPSP01000004 131,360 130
JPSP01000005 73,988 70
JPSP01000006 72,707 58
JPSP01000007 69,964 61
JPSP01000008 64,055 54
JPSP01000009 58,418 48
JPSP01000010 54,977 55
JPSP01000011 50,747 51
JPSP01000012 49,442 44
JPSP01000013 47,257 42
JPSP01000014 45,868 41
JPSP01000015 43,770 38
JPSP01000016 36,607 26
JPSP01000017 22,727 20
JPSP01000018 13,989 12
JPSP01000019 13,442 12
JPSP01000020 9,146 8
JPSP01000021 7,271 5
JPSP01000022 6,603 6
JPSP01000023 5,190 5
JPSP01000024 4,662 5
JPSP01000025 4,162 4
JPSP01000026 3,810 4
JPSP01000027 3,575 2
JPSP01000028 2,374 4
JPSP01000029 2,322 2
JPSP01000030 2,194 3
JPSP01000031 2,166 3
JPSP01000032 2,032 2
JPSP01000033 1,870 1
JPSP01000034 1,794 2
JPSP01000035 1,645 2
JPSP01000036 1,633 1
JPSP01000037 1,573 1
JPSP01000038 1,529 3
JPSP01000039 1,521 1
JPSP01000040 1,512 2
JPSP01000041 1,454 2
JPSP01000042 1,450 2
JPSP01000043 1,323 2
JPSP01000044 1,048 1
JPSP01000045 1,022 1
JPSP01000046 947 1
JPSP01000047 825 1
JPSP01000048 821 1
JPSP01000049 750 1
JPSP01000050 705 2
JPSP01000051 687 1
JPSP01000052 675 2
Total 1,485,499 1,295
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000737945.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000737945.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000737945.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000737945.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000737945.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000737945.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000737945.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000737945.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000737945.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000737945.1/genes/interpro.txt (File format)

MicrobeBase