cyanobase » Fischerella sp. PCC 9339

Fischerella sp. PCC 9339

Summary

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Data source name GCA_000315585.1
Full name Fischerella sp. PCC 9339
Taxonomy Lineage Cyanobacteria; Stigonematales; Fischerella.

Genome Information

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Chromosomes
Name Size (bp) Genes
JH992898 5,991,344 0
JH992893 718,413 0
JH992892 427,165 0
JH992890 257,338 0
JH992889 215,478 0
JH992891 190,577 0
JH992888 77,792 0
JH992887 56,812 0
JH992886 44,134 0
JH992896 18,110 0
JH992897 5,473 0
JH992895 2,843 0
JH992894 2,778 0
Total 8,008,257 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000315585.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000315585.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000315585.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000315585.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000315585.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000315585.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000315585.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000315585.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000315585.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000315585.1/genes/interpro.txt (File format)

MicrobeBase