cyanobase » Microcystis aeruginosa PCC 9806

Microcystis aeruginosa PCC 9806

Summary

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Data source name GCA_000312725.1
Full name Microcystis aeruginosa PCC 9806
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.

Genome Information

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Chromosomes
Name Size (bp) Genes
HE973238 554,252 537
HE973226 352,634 311
HE973224 301,312 279
HE973240 299,039 290
HE973225 285,911 262
HE973235 283,600 264
HE973252 237,667 234
HE973221 231,421 246
HE973222 153,593 153
HE973231 142,833 139
HE973230 138,705 128
HE973228 121,136 125
HE973243 113,367 107
HE973220 109,327 112
HE973242 96,237 92
HE973246 93,438 87
HE973250 89,162 81
HE973249 76,297 80
HE973244 62,874 59
HE973227 62,683 56
HE973247 56,682 54
HE973245 50,660 42
HE973248 46,939 42
HE973236 46,863 45
HE973229 37,800 28
HE973233 37,065 37
HE973232 36,993 25
HE973251 30,321 31
HE973239 24,801 24
HE973241 17,698 19
HE973234 10,308 12
HE973223 2,423 2
HE973237 2,228 2
HE973308 1,738 4
HE973293 1,730 2
HE973257 1,480 1
HE973302 1,422 2
HE973263 1,335 1
HE973256 1,327 1
HE973285 1,316 1
HE973301 1,272 1
HE973264 1,256 1
HE973294 1,227 0
HE973253 1,151 1
HE973268 1,125 0
HE973274 1,117 1
HE973259 1,109 1
HE973269 1,108 2
HE973304 1,101 2
HE973267 1,095 0
HE973280 1,090 1
HE973297 1,087 0
HE973312 1,044 0
HE973288 963 1
HE973254 961 0
HE973258 961 2
HE973265 960 1
HE973266 943 1
HE973303 928 1
HE973309 927 0
HE973306 927 0
HE973295 915 1
HE973286 908 0
HE973283 870 0
HE973298 838 1
HE973299 819 0
HE973305 819 1
HE973271 813 2
HE973260 798 1
HE973296 793 1
HE973289 791 0
HE973273 783 0
HE973291 779 1
HE973261 753 0
HE973278 749 0
HE973275 747 1
HE973284 738 1
HE973287 728 1
HE973255 728 1
HE973262 724 1
HE973290 705 1
HE973307 693 0
HE973279 687 0
HE973270 686 0
HE973276 665 0
HE973277 663 0
HE973300 653 0
HE973282 649 0
HE973292 640 1
HE973310 623 0
HE973272 620 1
HE973311 612 0
HE973281 606 0
Total 4,262,564 4,049
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000312725.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000312725.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000312725.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000312725.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000312725.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000312725.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000312725.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000312725.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000312725.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000312725.1/genes/interpro.txt (File format)

MicrobeBase