cyanobase » Cyanothece sp. ATCC 51472

Cyanothece sp. ATCC 51472

Summary

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Data source name GCA_000231425.3
Full name Cyanothece sp. ATCC 51472
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.

Genome Information

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Chromosomes
Name Size (bp) Genes
AGJC02000001 4,932,779 0
AGJC02000002 429,687 0
AGJC02000003 39,620 0
AGJC02000004 28,433 0
AGJC02000005 14,685 0
AGJC02000006 10,244 0
AGJC02000007 5,028 0
Total 5,460,476 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000231425.3 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000231425.3/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000231425.3/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000231425.3/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000231425.3/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000231425.3/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000231425.3/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000231425.3/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000231425.3/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000231425.3/genes/interpro.txt (File format)

MicrobeBase