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Full-text search result: 93 genes by "ligase" TXT SET

Synechococcus sp. RCC307 (93 genes ) TXT SET

SynRCC307_0027 Gene product UDP-N-acetylmuramate-alanine ligase
GO term Molecular Function: UDP-N-acetylmuramate-L-alanine ligase activity (GO:0008763)
GO term Molecular Function: ligase activity (GO:0016874)
InterPro IPR000713 Mur ligase, N-terminal; HMMPfam:PF01225 Mur_ligase
InterPro IPR004101 Mur ligase, C-terminal; Gene3D:G3DSA:3.90.190.20 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; HMMPfam:PF02875 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; superfamily:SSF53244 Mur_ligase_C
InterPro IPR005758 UDP-N-acetylmuramate-alanine ligase; HMMTigr:TIGR01082 murC
InterPro IPR013221 Mur ligase, central; Gene3D:G3DSA:3.40.1190.10 Mur_ligase_cen
InterPro IPR013221 Mur ligase, central; HMMPfam:PF08245 Mur_ligase_M
InterPro IPR013221 Mur ligase, central; superfamily:SSF53623 Mur_ligase_cen
Blast Hits [TAIR_pep] AT1G63680.1 | Symbols: ATMURE, PDE316, MURE | MURE; ATP binding / acid-amino acid ligase/ ligase | chr1:23614461-23617247 FORWARD
Blast Hits [nr] ref|ZP_05044384.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001] gi|197625134|gb|EDY37693.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
Blast Hits [sprot] MURC_PROM3 (sp|A2C5M3) UDP-N-acetylmuramate--L-alanine ligase OS=Prochlorococcus marinus (strain MIT 9303) GN=murC PE=3 SV=1
SynRCC307_0114 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: lysine-tRNA ligase activity (GO:0004824)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
Blast Hits [TAIR_pep] AT3G13490.1 | Symbols: OVA5, ATKRS-2 | OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding | chr3:4395984-4399302 REVERSE
SynRCC307_0158 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: histidine-tRNA ligase activity (GO:0004821)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
Blast Hits [TAIR_pep] AT3G46100.1 | Symbols: ATHRS1 | ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase | chr3:16928444-16930984 REVERSE
SynRCC307_0547 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: serine-tRNA ligase activity (GO:0004828)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
Blast Hits [TAIR_pep] AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD
SynRCC307_0585 GO term Molecular Function: glycine-tRNA ligase activity (GO:0004820)
InterPro IPR006194 Glycyl-tRNA synthetase, class II, heterodimeric; ProfileScan:PS50861 AA_TRNA_LIGASE_II_GLYAB
Blast Hits [TAIR_pep] AT3G48110.1 | Symbols: EDD1, EDD | EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1); glycine-tRNA ligase | chr3:17763111-17770964 FORWARD
SynRCC307_0603 Gene product D-alanine--D-alanine ligase
GO term Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716)
InterPro IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site; PatternScan:PS00843 DALA_DALA_LIGASE_1
InterPro IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site; PatternScan:PS00844 DALA_DALA_LIGASE_2
InterPro IPR005905 D-alanine--D-alanine ligase; HMMTigr:TIGR01205 D_ala_D_alaTIGR
InterPro IPR011095 D-alanine--D-alanine ligase, C-terminal; HMMPfam:PF07478 Dala_Dala_lig_C
InterPro IPR011127 D-alanine--D-alanine ligase, N-terminal; HMMPfam:PF01820 Dala_Dala_lig_N
Blast Hits [TAIR_pep] AT3G08840.2 | Symbols: | D-alanine--D-alanine ligase family | chr3:2679648-2686157 REVERSE
Blast Hits [nr] ref|ZP_01469585.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107] gi|116064840|gb|EAU70599.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107]
Blast Hits [sprot] DDL_SYNSC (sp|Q3ALB5) D-alanine--D-alanine ligase OS=Synechococcus sp. (strain CC9605) GN=ddl PE=3 SV=1
SynRCC307_0610 GO term Molecular Function: ligase activity (GO:0016874)
InterPro IPR004101 Mur ligase, C-terminal; Gene3D:G3DSA:3.90.190.20 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; superfamily:SSF53244 Mur_ligase_C
InterPro IPR013221 Mur ligase, central; HMMPfam:PF08245 Mur_ligase_M
InterPro IPR013221 Mur ligase, central; superfamily:SSF53623 Mur_ligase_cen
SynRCC307_0624 Gene product UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
GO term Molecular Function: acid-amino acid ligase activity (GO:0016881)
GO term Molecular Function: ligase activity (GO:0016874)
InterPro IPR000713 Mur ligase, N-terminal; HMMPfam:PF01225 Mur_ligase
InterPro IPR004101 Mur ligase, C-terminal; Gene3D:G3DSA:3.90.190.20 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; HMMPfam:PF02875 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; superfamily:SSF53244 Mur_ligase_C
InterPro IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HMMTigr:TIGR01085 murE
InterPro IPR013221 Mur ligase, central; Gene3D:G3DSA:3.40.1190.10 Mur_ligase_cen
InterPro IPR013221 Mur ligase, central; HMMPfam:PF08245 Mur_ligase_M
InterPro IPR013221 Mur ligase, central; superfamily:SSF53623 Mur_ligase_cen
Blast Hits [TAIR_pep] AT1G63680.1 | Symbols: ATMURE, PDE316, MURE | MURE; ATP binding / acid-amino acid ligase/ ligase | chr1:23614461-23617247 FORWARD
Blast Hits [nr] ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311] gi|123031834|sp|Q0ICH2.1|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Synechococcus sp. CC9311]
Blast Hits [sprot] MURE_SYNS3 (sp|Q0ICH2) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase OS=Synechococcus sp. (strain CC9311) GN=murE PE=3 SV=1
SynRCC307_0656 Gene product Biotin-(acetyl-CoA carboxylase) ligase
GO term Molecular Function: biotin-[acetyl-CoA-carboxylase] ligase activity (GO:0004077)
InterPro IPR004143 Biotin/lipoate A/B protein ligase; HMMPfam:PF03099 BPL_LipA_LipB
InterPro IPR004408 Biotin--acetyl-CoA-carboxylase ligase; HMMPanther:PTHR12835 BirA_ligase
Blast Hits [TAIR_pep] AT1G37150.1 | Symbols: HCS2 | HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic | chr1:14175198-14176839 REVERSE
Blast Hits [nr] ref|ZP_01085838.1| putative Biotin--acetyl-CoA-carboxylase ligase [Synechococcus sp. WH 5701] gi|87282530|gb|EAQ74489.1| putative Biotin--acetyl-CoA-carboxylase ligase [Synechococcus sp. WH 5701]
SynRCC307_0727 Gene product 5-formyltetrahydrofolate cyclo-ligase family protein
GO term Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272)
InterPro IPR002698 5-formyltetrahydrofolate cyclo-ligase; HMMPIR:PIRSF006806 FTHF_cligase
InterPro IPR002698 5-formyltetrahydrofolate cyclo-ligase; HMMPanther:PTHR23407:SF1 FTHF_cligase
InterPro IPR002698 5-formyltetrahydrofolate cyclo-ligase; HMMPfam:PF01812 5-FTHF_cyc-lig
InterPro IPR002698 5-formyltetrahydrofolate cyclo-ligase; HMMTigr:TIGR02727 MTHFS_bact
Blast Hits [nr] ref|YP_001016908.1| 5-formyltetrahydrofolate cyclo-ligase [Prochlorococcus marinus str. MIT 9303] gi|123962887|gb|ABM77643.1| 5-formyltetrahydrofolate cyclo-ligase [Prochlorococcus marinus str. MIT 9303]
SynRCC307_0876 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: proline-tRNA ligase activity (GO:0004827)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
Blast Hits [TAIR_pep] AT5G52520.1 | Symbols: OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase | chr5:21311112-21313875 FORWARD
SynRCC307_0945 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: ligase activity, forming aminoacyl-tRNA and related compounds (GO:0016876)
GO term Molecular Function: threonine-tRNA ligase activity (GO:0004829)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
Blast Hits [TAIR_pep] AT2G04842.1 | Symbols: EMB2761 | EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleotide binding / threonine-tRNA ligase | chr2:1698466-1701271 REVERSE
SynRCC307_1004 InterPro IPR002847 F420-0:gamma-glutamyl ligase-related; HMMPfam:PF01996 F420_ligase
SynRCC307_1018 Gene product ATP-dependent DNA ligase
GO term Molecular Function: DNA ligase (ATP) activity (GO:0003910)
InterPro IPR012309 ATP dependent DNA ligase, C-terminal; HMMPfam:PF04679 DNA_ligase_A_C
InterPro IPR012310 ATP dependent DNA ligase, central; HMMPfam:PF01068 DNA_ligase_A_M
InterPro IPR012310 ATP dependent DNA ligase, central; ProfileScan:PS50160 DNA_LIGASE_A3
InterPro IPR016059 ATP-dependent DNA ligase, conserved site; PatternScan:PS00697 DNA_LIGASE_A1
InterPro NULL NULL; HMMPfam:PF04675 DNA_ligase_A_N
Blast Hits [TAIR_pep] AT1G08130.1 | Symbols: ATLIG1 | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA binding / DNA ligase (ATP) | chr1:2542913-2547815 REVERSE
Blast Hits [nr] ref|ZP_01086310.1| putative ATP-dependent DNA ligase [Synechococcus sp. WH 5701] gi|87281940|gb|EAQ73903.1| putative ATP-dependent DNA ligase [Synechococcus sp. WH 5701]
Blast Hits [sprot] DNLI_ACIBL (sp|Q1II25) Probable DNA ligase OS=Acidobacteria bacterium (strain Ellin345) GN=lig PE=3 SV=1
SynRCC307_1146 Gene product UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alani ne ligase
GO term Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
GO term Molecular Function: ligase activity (GO:0016874)
InterPro IPR000713 Mur ligase, N-terminal; HMMPfam:PF01225 Mur_ligase
InterPro IPR004101 Mur ligase, C-terminal; Gene3D:G3DSA:3.90.190.20 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; HMMPfam:PF02875 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; superfamily:SSF53244 Mur_ligase_C
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMPanther:PTHR23135:SF3 MurF
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMTigr:TIGR01143 murF
InterPro IPR013221 Mur ligase, central; Gene3D:G3DSA:3.40.1190.10 Mur_ligase_cen
InterPro IPR013221 Mur ligase, central; HMMPfam:PF08245 Mur_ligase_M
InterPro IPR013221 Mur ligase, central; superfamily:SSF53623 Mur_ligase_cen
Blast Hits [sprot] MURF_SYNY3 (sp|P45450) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Synechocystis sp. (strain PCC 6803) GN=murF PE=3 SV=1
SynRCC307_1188 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: leucine-tRNA ligase activity (GO:0004823)
InterPro IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site; PatternScan:PS00178 AA_TRNA_LIGASE_I
Blast Hits [TAIR_pep] AT4G04350.1 | Symbols: EMB2369 | EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding | chr4:2128129-2133030 FORWARD
SynRCC307_1268 GO term Molecular Function: glycine-tRNA ligase activity (GO:0004820)
InterPro IPR006194 Glycyl-tRNA synthetase, class II, heterodimeric; ProfileScan:PS50861 AA_TRNA_LIGASE_II_GLYAB
Blast Hits [TAIR_pep] AT3G48110.1 | Symbols: EDD1, EDD | EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1); glycine-tRNA ligase | chr3:17763111-17770964 FORWARD
SynRCC307_1345 GO term Molecular Function: acetate-CoA ligase activity (GO:0003987)
InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
InterPro IPR011904 Acetate--CoA ligase; HMMTigr:TIGR02188 Ac_CoA_lig_AcsA
Blast Hits [TAIR_pep] AT5G36880.1 | Symbols: | acetyl-CoA synthetase, putative / acetate-CoA ligase, putative | chr5:14534961-14539084 REVERSE
Blast Hits [nr] ref|ZP_01467683.1| Acetate--CoA ligase [Synechococcus sp. BL107] gi|116065819|gb|EAU71576.1| Acetate--CoA ligase [Synechococcus sp. BL107]
SynRCC307_1369 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: histidine-tRNA ligase activity (GO:0004821)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
Blast Hits [TAIR_pep] AT3G46100.1 | Symbols: ATHRS1 | ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase | chr3:16928444-16930984 REVERSE
SynRCC307_1417 InterPro IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; HMMPfam:PF02222 ATP-grasp
SynRCC307_1578 Gene product Lipoate-protein ligase A
InterPro IPR004143 Biotin/lipoate A/B protein ligase; HMMPfam:PF03099 BPL_LipA_LipB
Blast Hits [nr] ref|YP_001224385.1| lipoate-protein ligase A [Synechococcus sp. WH 7803] gi|147847537|emb|CAK23088.1| Lipoate-protein ligase A [Synechococcus sp. WH 7803]
SynRCC307_1666 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: glutamate-tRNA ligase activity (GO:0004818)
InterPro IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site; PatternScan:PS00178 AA_TRNA_LIGASE_I
Blast Hits [TAIR_pep] AT5G64050.1 | Symbols: ATERS, OVA3, ERS | ERS (GLUTAMATE TRNA SYNTHETASE); glutamate-tRNA ligase | chr5:25630196-25633099 REVERSE
SynRCC307_1741 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
Blast Hits [nr] ref|NP_897693.1| phenylalanyl-tRNA synthetase [Synechococcus sp. WH 8102] gi|41018286|sp|Q7TTU6.1|SYFA_SYNPX RecName: Full=Phenylalanyl-tRNA synthetase alpha chain; AltName: Full=Phenylalanine--tRNA ligase alpha chain; Short=PheRS gi|33639109|emb|CAE08115.1| Phenylalanyl-tRNA synthetase [Synechococcus sp. WH 8102]
SynRCC307_1796 InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
Blast Hits [nr] ref|ZP_01084007.1| putative long-chain-fatty-acid--CoA ligase [Synechococcus sp. WH 5701] gi|87284134|gb|EAQ76087.1| putative long-chain-fatty-acid--CoA ligase [Synechococcus sp. WH 5701]
Blast Hits [sprot] LCFH_HAEIN (sp|P44446) Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae GN=HI_0002 PE=3 SV=1
SynRCC307_1797 InterPro IPR004143 Biotin/lipoate A/B protein ligase; HMMPfam:PF03099 BPL_LipA_LipB
Blast Hits [nr] ref|ZP_01081449.1| putative lipoate-protein ligase B [Synechococcus sp. RS9917] gi|86166904|gb|EAQ68166.1| putative lipoate-protein ligase B [Synechococcus sp. RS9917]
SynRCC307_2069 Gene product Bifunctional enzyme (pantoate-beta-alanine ligase / cytidylate kinase), cyanobacteria-specific
GO term Molecular Function: pantoate-beta-alanine ligase activity (GO:0004592)
InterPro IPR003721 Pantoate-beta-alanine ligase; HMMPanther:PTHR21299:SF1 Pantoate_ligase
InterPro IPR003721 Pantoate-beta-alanine ligase; HMMPfam:PF02569 Pantoate_ligase
InterPro IPR003721 Pantoate-beta-alanine ligase; HMMTigr:TIGR00018 panC
Blast Hits [TAIR_pep] AT5G48840.1 | Symbols: PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization | chr5:19803823-19805041 REVERSE
Blast Hits [nr] ref|NP_876137.1| bifunctional pantoate ligase/cytidylate kinase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81663934|sp|Q7V9S8.1|PANCY_PROMA RecName: Full=Bifunctional pantoate ligase/cytidylate kinase; Includes: RecName: Full=Pantoate--beta-alanine ligase; AltName: Full=Pantothenate synthetase; AltName: Full=Pantoate-activating enzyme; Includes: RecName: Full=Cytidylate kinase; Short=CK; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase gi|33238725|gb|AAQ00790.1| Cytidylate kinase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
Blast Hits [sprot] PANCY_PROMA (sp|Q7V9S8) Bifunctional pantoate ligase/cytidylate kinase OS=Prochlorococcus marinus GN=panC/cmk PE=3 SV=1
SynRCC307_2071 GO term Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641)
InterPro IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase; HMMTigr:TIGR00878 purM
Blast Hits [TAIR_pep] AT3G55010.2 | Symbols: ATPURM, PUR5 | PUR5; ATP binding / phosphoribosylformylglycinamidine cyclo-ligase | chr3:20386818-20388549 FORWARD
Blast Hits [nr] ref|YP_001224195.1| phosphoribosylaminoimidazole synthetase [Synechococcus sp. WH 7803] gi|166229522|sp|A5GIY3.1|PUR5_SYNPW RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; AltName: Full=AIR synthase gi|147847347|emb|CAK22898.1| Phosphoribosylformylglycinamidine cyclo-ligase [Synechococcus sp. WH 7803]
Blast Hits [sprot] PUR5_SYNPW (sp|A5GIY3) Phosphoribosylformylglycinamidine cyclo-ligase OS=Synechococcus sp. (strain WH7803) GN=purM PE=3 SV=1
SynRCC307_2089 Gene product Glutamate-cysteine ligase family 2 protein
GO term Molecular Function: glutamate-cysteine ligase activity (GO:0004357)
InterPro IPR006336 Glutamate--cysteine ligase, GCS2; HMMPfam:PF04107 GCS2
InterPro IPR011792 Glutamate--cysteine ligase, putative; HMMTigr:TIGR02048 gshA_cyano
Blast Hits [nr] ref|ZP_05045225.1| glutamate--cysteine ligase, putative [Cyanobium sp. PCC 7001] gi|197625975|gb|EDY38534.1| glutamate--cysteine ligase, putative [Cyanobium sp. PCC 7001]
Blast Hits [sprot] CAAL_GLOVI (sp|Q7NI89) Carboxylate-amine ligase gll2294 OS=Gloeobacter violaceus GN=gll2294 PE=3 SV=1
SynRCC307_2197 GO term Molecular Function: phosphopantothenate--cysteine ligase activity (GO:0004632)
InterPro IPR005252 Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; HMMTigr:TIGR00521 coaBC_dfp
Blast Hits [nr] ref|ZP_01084725.1| putative p-pantothenate cysteine ligase andp-pantothenenoylcysteine decarboxylase [Synechococcus sp. WH 5701] gi|87283459|gb|EAQ75414.1| putative p-pantothenate cysteine ligase andp-pantothenenoylcysteine decarboxylase [Synechococcus sp. WH 5701]
SynRCC307_2212 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: isoleucine-tRNA ligase activity (GO:0004822)
InterPro IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site; PatternScan:PS00178 AA_TRNA_LIGASE_I
Blast Hits [TAIR_pep] AT5G49030.1 | Symbols: OVA2 | OVA2 (ovule abortion 2); ATP binding / aminoacyl-tRNA ligase/ catalytic/ isoleucine-tRNA ligase/ nucleotide binding | chr5:19875091-19882291 REVERSE
SynRCC307_2217 InterPro IPR007016 O-antigen ligase-related; HMMPfam:PF04932 Wzy_C
SynRCC307_2241 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: arginine-tRNA ligase activity (GO:0004814)
InterPro IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site; PatternScan:PS00178 AA_TRNA_LIGASE_I
Blast Hits [TAIR_pep] AT4G26300.1 | Symbols: emb1027 | emb1027 (embryo defective 1027); ATP binding / aminoacyl-tRNA ligase/ arginine-tRNA ligase/ nucleotide binding | chr4:13308400-13313109 REVERSE
SynRCC307_2255 Gene product O-succinylbenzoate-CoA ligase
InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
Blast Hits [nr] ref|YP_378118.1| O-succinylbenzoic acid--CoA ligase [Synechococcus sp. CC9902] gi|78169978|gb|ABB27075.1| probable O-succinylbenzoic acid--CoA ligase [Synechococcus sp. CC9902]
Blast Hits [sprot] MENE_OCEIH (sp|Q8ENZ7) 2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1
SynRCC307_2380 GO term Molecular Function: alanine-tRNA ligase activity (GO:0004813)
GO term Molecular Function: ligase activity, forming aminoacyl-tRNA and related compounds (GO:0016876)
InterPro IPR002318 Alanyl-tRNA synthetase, class IIc; HMMTigr:TIGR00344 alaS: alanine--tRNA ligase
InterPro IPR018165 Alanyl-tRNA synthetase, class IIc, core domain; ProfileScan:PS50860 AA_TRNA_LIGASE_II_ALA
Blast Hits [TAIR_pep] AT5G22800.1 | Symbols: EMB1030 | EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding | chr5:7616221-7619961 REVERSE
Blast Hits [nr] ref|NP_895981.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313] gi|41018180|sp|Q7V419.1|SYA_PROMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33641201|emb|CAE22331.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str. MIT 9313]
SynRCC307_2409 Gene product NAD-dependent DNA ligase LigA
GO term Molecular Function: DNA ligase (NAD+) activity (GO:0003911)
InterPro IPR001679 NAD-dependent DNA ligase; HMMPIR:PIRSF001604 LigA
InterPro IPR001679 NAD-dependent DNA ligase; HMMTigr:TIGR00575 dnlj
InterPro IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type; HMMPfam:PF03119 DNA_ligase_ZBD
InterPro IPR004150 NAD-dependent DNA ligase, OB-fold; HMMPfam:PF03120 DNA_ligase_OB
InterPro IPR005220 Protein of unknown function DUF388, OB-fold; Gene3D:G3DSA:2.40.50.200 DNA_ligase_OB
InterPro IPR013839 NAD-dependent DNA ligase, adenylation; HMMPfam:PF01653 DNA_ligase_aden
InterPro IPR013840 NAD-dependent DNA ligase, N-terminal; HMMSmart:SM00532 LIGANc
Blast Hits [nr] ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605] gi|123729638|sp|Q3AGK2.1|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605]
Blast Hits [sprot] DNLJ_SYNSC (sp|Q3AGK2) DNA ligase OS=Synechococcus sp. (strain CC9605) GN=ligA PE=3 SV=1
SynRCC307_2416 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: valine-tRNA ligase activity (GO:0004832)
InterPro IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site; PatternScan:PS00178 AA_TRNA_LIGASE_I
Blast Hits [TAIR_pep] AT5G16715.1 | Symbols: EMB2247 | EMB2247 (embryo defective 2247); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase | chr5:5485353-5493229 FORWARD
SynRCC307_2438 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: aspartate-tRNA ligase activity (GO:0004815)
GO term Molecular Function: ligase activity (GO:0016874)
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
SynRCC307_2511 InterPro IPR007016 O-antigen ligase-related; HMMPfam:PF04932 Wzy_C
SynRCC307_2528 InterPro IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; HMMPfam:PF02222 ATP-grasp
SynRCC307_1847 GO term Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764)
GO term Molecular Function: ligase activity (GO:0016874)
InterPro IPR004101 Mur ligase, C-terminal; Gene3D:G3DSA:3.90.190.20 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; HMMPfam:PF02875 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; superfamily:SSF53244 Mur_ligase_C
InterPro IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HMMTigr:TIGR01087 murD
InterPro IPR013221 Mur ligase, central; Gene3D:G3DSA:3.40.1190.10 Mur_ligase_cen
InterPro IPR013221 Mur ligase, central; HMMPfam:PF08245 Mur_ligase_M
InterPro IPR013221 Mur ligase, central; superfamily:SSF53623 Mur_ligase_cen
Blast Hits [TAIR_pep] AT1G63680.1 | Symbols: ATMURE, PDE316, MURE | MURE; ATP binding / acid-amino acid ligase/ ligase | chr1:23614461-23617247 FORWARD
Blast Hits [sprot] MURD_SYNPX (sp|Q7U8T1) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechococcus sp. (strain WH8102) GN=murD PE=3 SV=1
SynRCC307_1296 Gene product Glutamine synthetase, glutamate ammonia ligase
GO term Molecular Function: glutamate-ammonia ligase activity (GO:0004356)
Blast Hits [TAIR_pep] AT3G53180.1 | Symbols: | catalytic/ glutamate-ammonia ligase | chr3:19707068-19711188 FORWARD
SynRCC307_1822 Gene product Phosphoribosylamine--glycine ligase
GO term Molecular Function: phosphoribosylamine-glycine ligase activity (GO:0004637)
Blast Hits [TAIR_pep] AT1G09830.1 | Symbols: | phosphoribosylamine--glycine ligase (PUR2) | chr1:3192783-3194936 REVERSE
Blast Hits [nr] ref|ZP_01470886.1| phosphoribosylamine--glycine ligase [Synechococcus sp. RS9916] gi|116068929|gb|EAU74681.1| phosphoribosylamine--glycine ligase [Synechococcus sp. RS9916]
Blast Hits [sprot] PUR2_ANASP (sp|Q8YRD8) Phosphoribosylamine--glycine ligase OS=Anabaena sp. (strain PCC 7120) GN=purD PE=3 SV=1
SynRCC307_0072 GO term Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879)
SynRCC307_0341 GO term Molecular Function: ligase activity (GO:0016874)
SynRCC307_0482 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
Blast Hits [TAIR_pep] AT5G64050.1 | Symbols: ATERS, OVA3, ERS | ERS (GLUTAMATE TRNA SYNTHETASE); glutamate-tRNA ligase | chr5:25630196-25633099 REVERSE
SynRCC307_0993 GO term Molecular Function: ligase activity (GO:0016874)
SynRCC307_1223 GO term Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826)
SynRCC307_1228 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: methionine-tRNA ligase activity (GO:0004825)
Blast Hits [TAIR_pep] AT3G55400.1 | Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding | chr3:20535809-20538999 REVERSE
Blast Hits [nr] ref|ZP_01086455.1| methionine--tRNA ligase [Synechococcus sp. WH 5701] gi|87281785|gb|EAQ73750.1| methionine--tRNA ligase [Synechococcus sp. WH 5701]
SynRCC307_1241 GO term Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879)
SynRCC307_1326 GO term Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884)
SynRCC307_1445 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: tryptophan-tRNA ligase activity (GO:0004830)
Blast Hits [TAIR_pep] AT2G25840.1 | Symbols: OVA4 | OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase | chr2:11021924-11025158 FORWARD
SynRCC307_1584 GO term Molecular Function: ligase activity (GO:0016874)
SynRCC307_1670 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: cysteine-tRNA ligase activity (GO:0004817)
Blast Hits [TAIR_pep] AT2G31170.1 | Symbols: SYCO ARATH | SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding | chr2:13282559-13285616 REVERSE
SynRCC307_2375 GO term Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884)
GO term Molecular Function: ligase activity (GO:0016874)
Blast Hits [TAIR_pep] AT1G48520.1 | Symbols: GATB | GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase | chr1:17940185-17942540 FORWARD
SynRCC307_1805 GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: tyrosine-tRNA ligase activity (GO:0004831)
Blast Hits [TAIR_pep] AT3G02660.1 | Symbols: emb2768 | emb2768 (EMBRYO DEFECTIVE 2768); ATP binding / RNA binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase | chr3:570221-571756 REVERSE
Blast Hits [nr] ref|YP_382397.1| tyrosyl-tRNA synthetase [Synechococcus sp. CC9605] gi|115305827|sp|Q3AHU0.1|SYY_SYNSC RecName: Full=Tyrosyl-tRNA synthetase; AltName: Full=Tyrosine--tRNA ligase; Short=TyrRS gi|78198077|gb|ABB35842.1| tyrosyl-tRNA synthetase [Synechococcus sp. CC9605]
SynRCC307_0879 Blast Hits [nr] ref|YP_001224343.1| adenylosuccinate synthetase [Synechococcus sp. WH 7803] gi|166234004|sp|A5GJD1.1|PURA_SYNPW RecName: Full=Adenylosuccinate synthetase; AltName: Full=IMP--aspartate ligase; AltName: Full=AdSS; AltName: Full=AMPSase gi|147847495|emb|CAK23046.1| Adenylosuccinate synthase [Synechococcus sp. WH 7803]
SynRCC307_2465 Blast Hits [nr] ref|ZP_05789673.1| carboxylate-amine ligase [Synechococcus sp. WH 8109] gi|260413577|gb|EEX06873.1| carboxylate-amine ligase [Synechococcus sp. WH 8109]
SynRCC307_0346 Blast Hits [sprot] MURC_STRCO (sp|Q9X827) UDP-N-acetylmuramate--L-alanine ligase OS=Streptomyces coelicolor GN=murC PE=3 SV=1
SynRCC307_0677 Blast Hits [sprot] LIGB_CHRSD (sp|Q1QXD7) DNA ligase B OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ligB PE=3 SV=1
SynRCC307_0804 Blast Hits [sprot] MURC_SPHAL (sp|Q1GRY0) UDP-N-acetylmuramate--L-alanine ligase OS=Sphingopyxis alaskensis GN=murC PE=3 SV=1
SynRCC307_0989 Blast Hits [sprot] MYCB2_HUMAN (sp|O75592) Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3
SynRCC307_1053 Blast Hits [sprot] PUR5_LISIN (sp|Q92AP1) Phosphoribosylformylglycinamidine cyclo-ligase OS=Listeria innocua GN=purM PE=3 SV=1
SynRCC307_1103 Blast Hits [sprot] DNLJ_SYNP2 (sp|B1XLV0) DNA ligase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ligA PE=3 SV=1
SynRCC307_1320 Blast Hits [sprot] MURF_SYNY3 (sp|P45450) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Synechocystis sp. (strain PCC 6803) GN=murF PE=3 SV=1
SynRCC307_1340 Blast Hits [sprot] DNLJ_CLOD6 (sp|Q180F3) DNA ligase OS=Clostridium difficile (strain 630) GN=ligA PE=3 SV=1
SynRCC307_1358 Blast Hits [sprot] SUCC_PYRCJ (sp|A3MWQ7) Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=sucC PE=3 SV=1
SynRCC307_1409 Blast Hits [sprot] MURC_CALS8 (sp|A4XGE5) UDP-N-acetylmuramate--L-alanine ligase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=murC PE=3 SV=1
SynRCC307_1431 Blast Hits [sprot] DNLI_OPITP (sp|B1ZZL9) Probable DNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=lig PE=3 SV=1
SynRCC307_1522 Blast Hits [TAIR_pep] AT3G11840.1 | Symbols: PUB24 | PUB24 (PLANT U-BOX 24); binding / ubiquitin-protein ligase | chr3:3736578-3738250 REVERSE
Blast Hits [sprot] TOM1_ASHGO (sp|Q756G2) Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1
SynRCC307_1617 Blast Hits [sprot] HERC5_HUMAN (sp|Q9UII4) Probable E3 ubiquitin-protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2
SynRCC307_1618 Blast Hits [sprot] DLTA_STRPM (sp|Q48SZ3) D-alanine--poly(phosphoribitol) ligase subunit 1 OS=Streptococcus pyogenes serotype M28 GN=dltA PE=3 SV=1
SynRCC307_1918 Blast Hits [sprot] MURD_LACSS (sp|Q38XM9) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=murD PE=3 SV=1
SynRCC307_2286 Blast Hits [sprot] DNLJ_GEOUR (sp|A5GA98) DNA ligase OS=Geobacter uraniireducens (strain Rf4) GN=ligA PE=3 SV=1
SynRCC307_0229 Blast Hits [TAIR_pep] AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5); ubiquitin-protein ligase | chr5:20334420-20336531 REVERSE
SynRCC307_0374 Blast Hits [TAIR_pep] AT1G70320.1 | Symbols: UPL2 | UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase | chr1:26488745-26501281 REVERSE
SynRCC307_0403 Blast Hits [TAIR_pep] AT4G14070.1 | Symbols: AAE15 | AAE15 (acyl-activating enzyme 15); long-chain-fatty-acid-[acyl-carrier-protein] ligase | chr4:8112122-8118039 REVERSE
SynRCC307_0433 Blast Hits [TAIR_pep] AT1G02860.2 | Symbols: NLA | NLA (nitrogen limitation adaptation); ubiquitin-protein ligase | chr1:635474-637083 FORWARD
SynRCC307_0465 Blast Hits [TAIR_pep] AT5G35930.1 | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:14067197-14074404 REVERSE
SynRCC307_0530 Blast Hits [TAIR_pep] AT5G35930.1 | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:14067197-14074404 REVERSE
SynRCC307_0666 Blast Hits [TAIR_pep] AT1G29880.1 | Symbols: | glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE
SynRCC307_0883 Blast Hits [TAIR_pep] AT1G20510.2 | Symbols: OPCL1 | OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase | chr1:7103939-7105856 REVERSE
SynRCC307_0954 Blast Hits [TAIR_pep] AT1G68050.1 | Symbols: ADO3, FKF1 | FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1); signal transducer/ two-component sensor/ ubiquitin-protein ligase | chr1:25508737-25510697 FORWARD
SynRCC307_1033 Blast Hits [TAIR_pep] AT3G29270.2 | Symbols: | ubiquitin-protein ligase | chr3:11235326-11236117 FORWARD
SynRCC307_1075 Blast Hits [TAIR_pep] AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase | chr2:16672848-16675486 REVERSE
SynRCC307_1121 Blast Hits [TAIR_pep] AT1G07910.2 | Symbols: ATRNL, RNL | RNL (RNA LIGASE); 2',3'-cyclic-nucleotide 3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase | chr1:2446712-2454386 FORWARD
SynRCC307_1143 Blast Hits [TAIR_pep] AT3G55010.2 | Symbols: ATPURM, PUR5 | PUR5; ATP binding / phosphoribosylformylglycinamidine cyclo-ligase | chr3:20386818-20388549 FORWARD
SynRCC307_1247 Blast Hits [TAIR_pep] AT1G77590.1 | Symbols: LACS9 | LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase | chr1:29148501-29151776 REVERSE
SynRCC307_1327 Blast Hits [TAIR_pep] AT4G36550.1 | Symbols: | binding / ubiquitin-protein ligase | chr4:17245400-17247926 REVERSE
SynRCC307_1563 Blast Hits [TAIR_pep] AT1G49250.1 | Symbols: | ATP dependent DNA ligase family protein | chr1:18220533-18224256 FORWARD
SynRCC307_1672 Blast Hits [TAIR_pep] AT1G07910.2 | Symbols: ATRNL, RNL | RNL (RNA LIGASE); 2',3'-cyclic-nucleotide 3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase | chr1:2446712-2454386 FORWARD
SynRCC307_1724 Blast Hits [TAIR_pep] AT1G09830.1 | Symbols: | phosphoribosylamine--glycine ligase (PUR2) | chr1:3192783-3194936 REVERSE
SynRCC307_2210 Blast Hits [TAIR_pep] AT3G19380.1 | Symbols: PUB25 | PUB25 (PLANT U-BOX 25); binding / ubiquitin-protein ligase | chr3:6714602-6715867 REVERSE
SynRCC307_2442 Blast Hits [TAIR_pep] AT1G30820.1 | Symbols: | CTP synthase, putative / UTP--ammonia ligase, putative | chr1:10945251-10948825 REVERSE

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ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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