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Full-text search result: 281 genes by "dependent" TXT SET

Synechococcus sp. RCC307 (281 genes ) TXT SET

SynRCC307_0017 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
SynRCC307_0047 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_0054 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0084 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0121 InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; HMMPfam:PF00291 PALP
InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; superfamily:SSF53686 PyrdxlP-dep_enz_bsu
Blast Hits [TAIR_pep] AT1G55880.1 | Symbols: | pyridoxal-5'-phosphate-dependent enzyme, beta family protein | chr1:20899292-20901140 REVERSE
SynRCC307_0153 InterPro IPR004439 Isocitrate dehydrogenase NADP-dependent, prokaryotic; HMMPanther:PTHR11835:SF1 NADP_IDH_prok
InterPro IPR004439 Isocitrate dehydrogenase NADP-dependent, prokaryotic; HMMTigr:TIGR00183 prok_nadp_idh
SynRCC307_0159 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0160 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
SynRCC307_0185 Gene product NAD dependent epimerase/dehydratase
InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0186 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
Blast Hits [nr] ref|ZP_01079058.1| NAD dependent epimerase/dehydratase family protein [Synechococcus sp. RS9917] gi|86168927|gb|EAQ70183.1| NAD dependent epimerase/dehydratase family protein [Synechococcus sp. RS9917]
SynRCC307_0193 Gene product Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_0191 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
InterPro NULL NULL; HMMPanther:PTHR10366 NAD DEPENDENT EPIMERASE/DEHYDRATASE
SynRCC307_0189 InterPro NULL NULL; HMMPanther:PTHR10366 NAD DEPENDENT EPIMERASE/DEHYDRATASE
SynRCC307_0188 InterPro NULL NULL; HMMPanther:PTHR10366 NAD DEPENDENT EPIMERASE/DEHYDRATASE
SynRCC307_0190 InterPro NULL NULL; HMMPanther:PTHR10366 NAD DEPENDENT EPIMERASE/DEHYDRATASE
SynRCC307_0204 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0206 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0217 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0218 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0222 GO term Molecular Function: ATP-dependent DNA helicase activity (GO:0004003)
InterPro IPR005751 DNA helicase, ATP-dependent, PcrA type; HMMTigr:TIGR01073 pcrA
Blast Hits [TAIR_pep] AT4G25120.1 | Symbols: | ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase | chr4:12890694-12898309 FORWARD
Blast Hits [sprot] PCRA_STAAW (sp|Q8NVT1) ATP-dependent DNA helicase pcrA OS=Staphylococcus aureus (strain MW2) GN=pcrA PE=3 SV=1
SynRCC307_0267 InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; HMMPfam:PF00291 PALP
InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; superfamily:SSF53686 PyrdxlP-dep_enz_bsu
SynRCC307_0270 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0389 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
SynRCC307_0401 InterPro IPR003091 Voltage-dependent potassium channel; FPrintScan:PR00169 KCHANNEL
SynRCC307_0443 InterPro IPR003607 Metal-dependent phosphohydrolase, HD domain; HMMSmart:SM00471 HDc
InterPro IPR006674 Metal-dependent phosphohydrolase, HD subdomain; HMMPfam:PF01966 HD
Blast Hits [TAIR_pep] AT5G40270.1 | Symbols: | metal-dependent phosphohydrolase HD domain-containing protein | chr5:16093394-16097093 REVERSE
SynRCC307_0453 Gene product ATP-dependent DNA helicase
GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
InterPro IPR004589 DNA helicase, ATP-dependent, RecQ type; HMMPanther:PTHR13710 RecQ
InterPro IPR018329 DNA helicase, ATP-dependent, RecQ type, N-terminal; HMMTigr:TIGR00614 recQ_fam
Blast Hits [TAIR_pep] AT4G35740.1 | Symbols: RecQl3 | RecQl3; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | chr4:16936233-16940172 FORWARD
Blast Hits [nr] ref|ZP_01085868.1| putative ATP-dependent DNA helicase [Synechococcus sp. WH 5701] gi|87282237|gb|EAQ74197.1| putative ATP-dependent DNA helicase [Synechococcus sp. WH 5701]
Blast Hits [sprot] RECQ_ECOLI (sp|P15043) ATP-dependent DNA helicase recQ OS=Escherichia coli (strain K12) GN=recQ PE=1 SV=5
SynRCC307_0455 InterPro IPR012394 Aldehyde dehydrogenase NAD(P)-dependent; HMMPIR:PIRSF036492 ALDH
InterPro IPR012394 Aldehyde dehydrogenase NAD(P)-dependent; HMMPanther:PTHR11699:SF15 ALDH
SynRCC307_0469 InterPro IPR011078 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; HMMPIR:PIRSF004848 YBL036c_PLPDEIII
InterPro IPR011078 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; HMMPanther:PTHR10146 PP_YBL036C
InterPro IPR011078 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; HMMTigr:TIGR00044 PP_YBL036C
SynRCC307_0471 InterPro IPR004455 NADP oxidoreductase, coenzyme F420-dependent; HMMPfam:PF03807 F420_oxidored
SynRCC307_0569 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_0574 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR004573 Fmu, rRNA SAM-dependent methyltransferase; HMMTigr:TIGR00563 rsmB
Blast Hits [nr] ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9916] gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9916]
SynRCC307_0598 Gene product Oxygen independent coproporphyrinogen III oxidase
InterPro IPR004559 Putative oxygen-independent coproporphyrinogen III oxidase; HMMTigr:TIGR00539 hemN_rel
Blast Hits [nr] ref|ZP_01085772.1| Oxygen-independent coproporphyrinogen III oxidase [Synechococcus sp. WH 5701] gi|87282464|gb|EAQ74423.1| Oxygen-independent coproporphyrinogen III oxidase [Synechococcus sp. WH 5701]
Blast Hits [sprot] Y1917_SYNY3 (sp|P73245) Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 OS=Synechocystis sp. (strain PCC 6803) GN=sll1917 PE=3 SV=1
SynRCC307_0611 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_0615 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
SynRCC307_0625 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_0626 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
SynRCC307_0654 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_0706 Gene product Sec-independent protein secretion pathway component TatC
InterPro IPR002033 Sec-independent periplasmic protein translocase; FPrintScan:PR01840 TATCFAMILY
InterPro IPR002033 Sec-independent periplasmic protein translocase; HMMPfam:PF00902 TatC
InterPro IPR019820 Sec-independent periplasmic protein translocase, conserved site; PatternScan:PS01218 TATC
Blast Hits [TAIR_pep] AT2G01110.1 | Symbols: APG2, UNE3, PGA2, TATC | APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter | chr2:83786-85088 REVERSE
SynRCC307_0720 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_0747 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_0748 InterPro IPR003607 Metal-dependent phosphohydrolase, HD domain; HMMSmart:SM00471 HDc
InterPro IPR006674 Metal-dependent phosphohydrolase, HD subdomain; HMMPfam:PF01966 HD
InterPro IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain; HMMPfam:PF07698 7TM-7TMR_HD
Blast Hits [nr] ref|ZP_01086171.1| metal dependent phosphohydrolase [Synechococcus sp. WH 5701] gi|87282031|gb|EAQ73993.1| metal dependent phosphohydrolase [Synechococcus sp. WH 5701]
SynRCC307_0752 InterPro IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related; HMMPfam:PF02681 DUF212
Blast Hits [TAIR_pep] AT1G24350.1 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink). | chr1:8639098-8640313 REVERSE
SynRCC307_0782 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_0795 InterPro IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; HMMPIR:PIRSF001434 CGS
InterPro IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; HMMPanther:PTHR11808 Cys_Met_Meta_PP
InterPro IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; HMMPfam:PF01053 Cys_Met_Meta_PP
InterPro IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PatternScan:PS00868 CYS_MET_METAB_PP
InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_0803 Gene product FAD dependent oxidoreductase
InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
SynRCC307_0861 InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
SynRCC307_0918 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0931 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_0954 InterPro IPR013345 Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; HMMTigr:TIGR02505 RTPR
Blast Hits [sprot] RTPR_LACBA (sp|Q03PB4) Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rtpR PE=3 SV=1
SynRCC307_0980 InterPro IPR006275 Carbamoyl phosphate synthase, large subunit, glutamine-dependent; HMMTigr:TIGR01369 CPSaseII_lrg
SynRCC307_1011 Gene product NAD dependent epimerase/dehydratase
InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_1017 Gene product Putative ATP-dependent helicase
GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
InterPro IPR017170 Lhr-like ATP-dependent RNA helicase, predicted; HMMPIR:PIRSF037307 Lhr-like_helic_prd
Blast Hits [nr] ref|NP_897415.1| putative ATP-dependent helicase [Synechococcus sp. WH 8102] gi|33633026|emb|CAE07837.1| putative ATP-dependent helicase [Synechococcus sp. WH 8102]
Blast Hits [sprot] HELX_METJA (sp|Q57742) Uncharacterized ATP-dependent helicase MJ0294 OS=Methanocaldococcus jannaschii GN=MJ0294 PE=3 SV=1
SynRCC307_1018 Gene product ATP-dependent DNA ligase
InterPro IPR012309 ATP dependent DNA ligase, C-terminal; HMMPfam:PF04679 DNA_ligase_A_C
InterPro IPR012310 ATP dependent DNA ligase, central; HMMPfam:PF01068 DNA_ligase_A_M
InterPro IPR012310 ATP dependent DNA ligase, central; ProfileScan:PS50160 DNA_LIGASE_A3
InterPro IPR016059 ATP-dependent DNA ligase, conserved site; PatternScan:PS00697 DNA_LIGASE_A1
Blast Hits [nr] ref|ZP_01086310.1| putative ATP-dependent DNA ligase [Synechococcus sp. WH 5701] gi|87281940|gb|EAQ73903.1| putative ATP-dependent DNA ligase [Synechococcus sp. WH 5701]
SynRCC307_1112 Gene product Uncharacterized FAD-dependent dehydrogenase
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Blast Hits [nr] ref|YP_170999.1| uncharacterized FAD-dependent dehydrogenase [Synechococcus elongatus PCC 6301] gi|81300071|ref|YP_400279.1| uncharacterized FAD-dependent dehydrogenase [Synechococcus elongatus PCC 7942] gi|56685257|dbj|BAD78479.1| uncharacterized FAD-dependent dehydrogenase [Synechococcus elongatus PCC 6301] gi|81168952|gb|ABB57292.1| uncharacterized FAD-dependent dehydrogenase [Synechococcus elongatus PCC 7942]
SynRCC307_1191 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_1202 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
SynRCC307_1209 InterPro IPR004223 Vitamin B12-dependent methionine synthase, activation domain; Gene3D:G3DSA:3.10.196.10 Met_synth_B12
InterPro IPR004223 Vitamin B12-dependent methionine synthase, activation domain; HMMPfam:PF02965 Met_synt_B12
InterPro IPR004223 Vitamin B12-dependent methionine synthase, activation domain; ProfileScan:PS50974 ADOMET_ACTIVATION
InterPro IPR004223 Vitamin B12-dependent methionine synthase, activation domain; superfamily:SSF56507 Met_synth_B12
SynRCC307_1214 InterPro IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; HMMPfam:PF07479 NAD_Gly3P_dh_C
InterPro IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase; FPrintScan:PR00077 GPDHDRGNASE
InterPro IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase; HMMPIR:PIRSF000114 Glycerol-3-P_dh
InterPro IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase; HMMPanther:PTHR11728 NAD_Gly3P_DH
InterPro IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase; PatternScan:PS00957 NAD_G3PDH
InterPro IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; HMMPfam:PF01210 NAD_Gly3P_dh_N
Blast Hits [nr] ref|ZP_01086471.1| NAD+ dependent glycerol-3-phosphate dehydrogenase [Synechococcus sp. WH 5701] gi|87281801|gb|EAQ73766.1| NAD+ dependent glycerol-3-phosphate dehydrogenase [Synechococcus sp. WH 5701]
SynRCC307_1227 InterPro IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase; PatternScan:PS00977 FAD_G3PDH_1
InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
SynRCC307_1235 InterPro IPR016914 S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU, predicted; HMMPIR:PIRSF029256 SpoU_TrmH_prd
SynRCC307_1269 InterPro IPR011787 Sulphite reductase, ferredoxin dependent; HMMTigr:TIGR02042 sir
SynRCC307_1271 Gene product ATP-dependent DNA helicase
GO term Molecular Function: ATP-dependent DNA helicase activity (GO:0004003)
GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
InterPro IPR004609 DNA helicase, ATP-dependent, RecG; HMMTigr:TIGR00643 recG
Blast Hits [TAIR_pep] AT2G01440.1 | Symbols: | ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding | chr2:193950-199056 REVERSE
Blast Hits [nr] ref|YP_001225044.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803] gi|147848196|emb|CAK23747.1| ATP-dependent DNA helicase [Synechococcus sp. WH 7803]
Blast Hits [sprot] RECG_SYNY3 (sp|Q55681) ATP-dependent DNA helicase recG OS=Synechocystis sp. (strain PCC 6803) GN=recG PE=3 SV=1
SynRCC307_1284 InterPro IPR009249 Ferredoxin-dependent bilin reductase; HMMPfam:PF05996 Fe_bilin_red
SynRCC307_1292 Gene product Pyridoxal-dependent decarboxylase family protein
InterPro IPR002129 Pyridoxal phosphate-dependent decarboxylase; HMMPanther:PTHR11999 Pyridoxal_deC
InterPro IPR002129 Pyridoxal phosphate-dependent decarboxylase; HMMPfam:PF00282 Pyridoxal_deC
InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
Blast Hits [nr] ref|ZP_01085601.1| Pyridoxal-dependent decarboxylase family protein [Synechococcus sp. WH 5701] gi|87282673|gb|EAQ74631.1| Pyridoxal-dependent decarboxylase family protein [Synechococcus sp. WH 5701]
SynRCC307_1294 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_1344 InterPro IPR004481 K+-dependent Na+/Ca+ exchanger-like; HMMTigr:TIGR00367 K_NaCaexchng
SynRCC307_1345 InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
SynRCC307_1363 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_1364 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_1372 InterPro IPR001509 NAD-dependent epimerase/dehydratase; HMMPfam:PF01370 Epimerase
SynRCC307_1375 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_1376 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_1381 InterPro IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase; FPrintScan:PR01001 FADG3PDH
InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
Blast Hits [TAIR_pep] AT3G10370.1 | Symbols: SDP6 | SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase | chr3:3216502-3219027 FORWARD
SynRCC307_1391 InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; HMMPfam:PF00291 PALP
InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; superfamily:SSF53686 PyrdxlP-dep_enz_bsu
SynRCC307_1417 InterPro IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; HMMPfam:PF02222 ATP-grasp
SynRCC307_1418 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_1455 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_1458 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_1491 InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; HMMPfam:PF00291 PALP
InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; superfamily:SSF53686 PyrdxlP-dep_enz_bsu
SynRCC307_1542 InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
SynRCC307_1544 InterPro IPR002129 Pyridoxal phosphate-dependent decarboxylase; HMMPanther:PTHR11999 Pyridoxal_deC
InterPro IPR002129 Pyridoxal phosphate-dependent decarboxylase; HMMPfam:PF00282 Pyridoxal_deC
InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_1560 GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
InterPro IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site; PatternScan:PS00039 DEAD_ATP_HELICASE
Blast Hits [TAIR_pep] AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | chr3:7892641-7895145 FORWARD
Blast Hits [nr] ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701] gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
SynRCC307_1564 Gene product light-independent protochlorophyllide reductase subunit N
InterPro IPR005970 Light-independent protochlorophyllide reductase, N subunit; HMMPIR:PIRSF000162 P_chlorophyll_rd
InterPro IPR005970 Light-independent protochlorophyllide reductase, N subunit; HMMTigr:TIGR01279 DPOR_bchN
Blast Hits [nr] ref|ZP_01085321.1| light-independent protochlorophyllide reductase subunit N [Synechococcus sp. WH 5701] gi|87282848|gb|EAQ74805.1| light-independent protochlorophyllide reductase subunit N [Synechococcus sp. WH 5701]
Blast Hits [sprot] CHLN_PROMM (sp|Q7V6E9) Light-independent protochlorophyllide reductase subunit N OS=Prochlorococcus marinus (strain MIT 9313) GN=chlN PE=3 SV=1
SynRCC307_1568 InterPro IPR005025 NADPH-dependent FMN reductase; HMMPfam:PF03358 FMN_red
SynRCC307_1572 InterPro IPR005979 Light-dependent protochlorophyllide reductase; HMMTigr:TIGR01289 LPOR
Blast Hits [sprot] POR_PLEBO (sp|O66148) Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1
SynRCC307_1565 Gene product light-independent protochlorophyllide reductase subunit B
InterPro IPR005969 Light-independent protochlorophyllide reductase, B subunit; HAMAP:MF_00353 BCHB_MF_00353
InterPro IPR005969 Light-independent protochlorophyllide reductase, B subunit; HMMTigr:TIGR01278 DPOR_BchB: light-independent protochlorophy
InterPro IPR016209 Protochlorophyllide reductase, ChlB, light independent; HMMPIR:PIRSF000163 Protochlorophyllide reductase chain ChlB, light-independent
Blast Hits [nr] ref|ZP_01085322.1| light-independent protochlorophyllide reductase subunit B [Synechococcus sp. WH 5701] gi|87282849|gb|EAQ74806.1| light-independent protochlorophyllide reductase subunit B [Synechococcus sp. WH 5701]
Blast Hits [sprot] CHLB_SYNSC (sp|Q3ALL7) Light-independent protochlorophyllide reductase subunit B OS=Synechococcus sp. (strain CC9605) GN=chlB PE=3 SV=1
SynRCC307_1566 InterPro IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein; HAMAP:MF_00355 BCHL_MF_00355
InterPro IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein; HMMTigr:TIGR01281 DPOR_bchL: light-independent protochlorophy
Blast Hits [TAIR_pep] AT5G24020.1 | Symbols: MIND, ARC11, ATMIND1 | MIND; ATPase/ calcium-dependent ATPase/ protein binding / protein homodimerization | chr5:8116731-8117711 FORWARD
Blast Hits [nr] ref|ZP_01469482.1| Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein [Synechococcus sp. BL107] gi|116064737|gb|EAU70496.1| Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein [Synechococcus sp. BL107]
Blast Hits [sprot] CHLL_SYNSC (sp|Q3ALL9) Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein OS=Synechococcus sp. (strain CC9605) GN=chlL PE=3 SV=1
SynRCC307_1635 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_1648 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_1650 InterPro IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component; HMMPfam:PF04290 DctQ
SynRCC307_1683 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Blast Hits [TAIR_pep] AT2G41680.1 | Symbols: NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase | chr2:17376349-17379028 REVERSE
SynRCC307_1796 InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
SynRCC307_2015 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2061 InterPro IPR009249 Ferredoxin-dependent bilin reductase; HMMPfam:PF05996 Fe_bilin_red
SynRCC307_2062 InterPro IPR009249 Ferredoxin-dependent bilin reductase; HMMPfam:PF05996 Fe_bilin_red
SynRCC307_2101 GO term Cellular Component: cAMP-dependent protein kinase complex (GO:0005952)
GO term Molecular Function: cAMP-dependent protein kinase regulator activity (GO:0008603)
InterPro IPR002373 cAMP/cGMP-dependent protein kinase; FPrintScan:PR00103 CAMPKINASE
SynRCC307_2179 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2203 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
SynRCC307_2235 InterPro IPR003607 Metal-dependent phosphohydrolase, HD domain; HMMSmart:SM00471 HDc
InterPro IPR006674 Metal-dependent phosphohydrolase, HD subdomain; HMMPfam:PF01966 HD
Blast Hits [nr] ref|ZP_01083655.1| metal dependent phosphohydrolase [Synechococcus sp. WH 5701] gi|87284684|gb|EAQ76636.1| metal dependent phosphohydrolase [Synechococcus sp. WH 5701]
SynRCC307_2242 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2255 InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
SynRCC307_2258 InterPro IPR002903 S-adenosyl-L-methionine-dependent methyltransferase, MraW; HMMPIR:PIRSF004486 MraW
InterPro IPR002903 S-adenosyl-L-methionine-dependent methyltransferase, MraW; HMMPanther:PTHR11265 Bact_methyltrans
InterPro IPR002903 S-adenosyl-L-methionine-dependent methyltransferase, MraW; HMMPfam:PF01795 Methyltransf_5
InterPro IPR002903 S-adenosyl-L-methionine-dependent methyltransferase, MraW; HMMTigr:TIGR00006 Bact_methyltrans
SynRCC307_2259 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2271 InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; HMMPfam:PF00291 PALP
InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; superfamily:SSF53686 PyrdxlP-dep_enz_bsu
SynRCC307_2284 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2294 InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
SynRCC307_2296 Gene product SAM dependent carboxyl methyltransferase
InterPro IPR005299 SAM dependent carboxyl methyltransferase; HMMPfam:PF03492 Methyltransf_7
Blast Hits [TAIR_pep] AT5G56300.1 | Symbols: GAMT2 | GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase | chr5:22799571-22801484 FORWARD
SynRCC307_2328 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2339 Gene product Sec-independent protein translocase protein TatA
InterPro IPR003369 Bacterial sec-independent translocation protein mttA/Hcf106; HMMPfam:PF02416 MttA_Hcf106
Blast Hits [sprot] TATA_SYNP6 (sp|Q5N2J3) Sec-independent protein translocase protein tatA/E homolog OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1
SynRCC307_2348 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2376 InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
SynRCC307_2390 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2392 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_2409 Gene product NAD-dependent DNA ligase LigA
InterPro IPR001679 NAD-dependent DNA ligase; HMMPIR:PIRSF001604 LigA
InterPro IPR001679 NAD-dependent DNA ligase; HMMTigr:TIGR00575 dnlj
InterPro IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type; HMMPfam:PF03119 DNA_ligase_ZBD
InterPro IPR004150 NAD-dependent DNA ligase, OB-fold; HMMPfam:PF03120 DNA_ligase_OB
InterPro IPR013839 NAD-dependent DNA ligase, adenylation; HMMPfam:PF01653 DNA_ligase_aden
InterPro IPR013840 NAD-dependent DNA ligase, N-terminal; HMMSmart:SM00532 LIGANc
Blast Hits [nr] ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605] gi|123729638|sp|Q3AGK2.1|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605]
SynRCC307_2463 InterPro IPR011059 Metal-dependent hydrolase, composite domain; superfamily:SSF51338 Metalo_hydrolase
SynRCC307_2474 InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; HMMPfam:PF00528 BPD_transp_1
InterPro IPR000515 Binding-protein-dependent transport systems inner membrane component; ProfileScan:PS50928 ABC_TM1
SynRCC307_2494 GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
InterPro IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site; PatternScan:PS00690 DEAH_ATP_HELICASE
InterPro IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB type; HMMPIR:PIRSF005496 ATP_hel_hrpB
InterPro IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB type; HMMTigr:TIGR01970 DEAH_box_HrpB
InterPro IPR013689 RNA helicase, ATP-dependent, HrpB type, C-terminal; HMMPfam:PF08482 HrpB_C
Blast Hits [TAIR_pep] AT1G32490.1 | Symbols: EMB2733, ESP3 | ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding | chr1:11742356-11749286 REVERSE
Blast Hits [nr] ref|YP_446839.1| ATP-dependent helicase HrpB [Salinibacter ruber DSM 13855] gi|83756874|gb|ABC44987.1| ATP-dependent helicase HrpB [Salinibacter ruber DSM 13855]
Blast Hits [sprot] HRPB_ECOLI (sp|P37024) ATP-dependent RNA helicase hrpB OS=Escherichia coli (strain K12) GN=hrpB PE=1 SV=3
SynRCC307_2515 InterPro IPR006076 FAD dependent oxidoreductase; HMMPfam:PF01266 DAO
SynRCC307_2528 InterPro IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; HMMPfam:PF02222 ATP-grasp
SynRCC307_2535 InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; HMMPfam:PF00291 PALP
InterPro IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit; superfamily:SSF53686 PyrdxlP-dep_enz_bsu
SynRCC307_1857 InterPro IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HMMPIR:PIRSF001492 IPGAM
InterPro IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HMMTigr:TIGR01307 pgm_bpd_ind
InterPro IPR011258 BPG-independent PGAM, N-terminal; HMMPfam:PF06415 iPGM_N
InterPro IPR011258 BPG-independent PGAM, N-terminal; superfamily:SSF64158 BPG-indep_PGM_N
Blast Hits [TAIR_pep] AT3G08590.2 | Symbols: | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative | chr3:2608683-2611237 REVERSE
Blast Hits [nr] ref|ZP_05046128.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Cyanobium sp. PCC 7001] gi|197626878|gb|EDY39437.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Cyanobium sp. PCC 7001]
Blast Hits [sprot] GPMI_PROM3 (sp|A2C700) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9303) GN=gpmI PE=3 SV=1
SynRCC307_1870 Gene product glutamine-dependent NAD(+) synthetase
InterPro IPR014445 Glutamine-dependent NAD(+) synthetase, GAT domain-containing; HMMPIR:PIRSF006630 NADS_GAT
Blast Hits [sprot] NADE_SYNY3 (sp|P74292) Probable glutamine-dependent NAD(+) synthetase OS=Synechocystis sp. (strain PCC 6803) GN=nadE PE=3 SV=1
SynRCC307_1894 InterPro IPR016856 Nitrile oxidoreductase, NADPH-dependent, QueF; HMMPIR:PIRSF027377 Nitrile_oxidored_QueF
InterPro IPR016856 Nitrile oxidoreductase, NADPH-dependent, QueF; HMMTigr:TIGR03139 QueF-II
Blast Hits [sprot] QUEF_SYNSC (sp|Q3AHI8) NADPH-dependent 7-cyano-7-deazaguanine reductase OS=Synechococcus sp. (strain CC9605) GN=queF PE=3 SV=1
SynRCC307_1924 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_1941 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Gene3D:G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1
InterPro IPR015424 Pyridoxal phosphate-dependent transferase, major domain; superfamily:SSF53383 PyrdxlP-dep_Trfase_major
SynRCC307_1960 Gene product Mg-dependent DNase
InterPro IPR012278 Deoxyribonuclease, TatD Mg-dependent; HMMPIR:PIRSF005902 DNase_TatD
InterPro IPR015991 Deoxyribonuclease, TatD Mg-dependent, prokaryote; HMMTigr:TIGR00010 TatD_DNase
SynRCC307_1959 GO term Biological Process: transcription, DNA-dependent (GO:0006351)
InterPro NULL NULL; superfamily:SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
Blast Hits [TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE
SynRCC307_0065 Gene product ATP-dependent protease ATP-binding subunit
Blast Hits [nr] ref|ZP_01471611.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. RS9916] gi|116069654|gb|EAU75406.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. RS9916]
Blast Hits [sprot] CLPX_SYNPW (sp|A5GHS5) ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain WH7803) GN=clpX PE=3 SV=1
SynRCC307_0066 Gene product Protease subunit of ATP-dependent Clp protease
Blast Hits [sprot] CLPP1_SYNPX (sp|Q7UA36) ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain WH8102) GN=clpP1 PE=3 SV=1
SynRCC307_0244 Gene product Inactive homolog of metal-dependent protease, putative molecular chaperone
SynRCC307_0546 Gene product Predicted membrane-associated Zn-dependent protease
SynRCC307_0595 Gene product ATP-dependent Clp protease proteolytic subunit
Blast Hits [nr] ref|ZP_01085769.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 5701] gi|87282461|gb|EAQ74420.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
Blast Hits [sprot] CLPP3_SYNS9 (sp|Q3AVC3) ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9902) GN=clpP3 PE=3 SV=1
SynRCC307_0596 Gene product ATP-dependent Clp protease-like protein
Blast Hits [TAIR_pep] AT4G17040.1 | Symbols: | ATP-dependent Clp protease proteolytic subunit, putative | chr4:9586740-9589297 REVERSE
Blast Hits [nr] ref|ZP_01081376.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp. RS9917] gi|86166831|gb|EAQ68093.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp. RS9917]
Blast Hits [sprot] CLPR_SYNY3 (sp|P74466) Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1
SynRCC307_0788 Gene product ATP-dependent Clp protease ATP-binding subunit clpA homolog
Blast Hits [TAIR_pep] AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC1; ATP binding / ATP-dependent peptidase/ ATPase | chr5:20715710-20719800 REVERSE
Blast Hits [sprot] CLPC_GUITH (sp|O78410) ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1
SynRCC307_0791 Gene product Uncharacterized conserved membrane protein, possible metal dependent phosphoesterase
SynRCC307_0856 Gene product SAM-dependent methyltransferase
SynRCC307_0866 Gene product Predicted metal-dependent membrane protease
SynRCC307_0897 Gene product Zn-dependent carboxypeptidase
SynRCC307_1149 Gene product SAM-dependent methyltransferase
SynRCC307_1172 Gene product Possible SAM-dependent methyltransferase
SynRCC307_1174 Gene product Possible SAM-dependent methyltransferase
SynRCC307_1205 Gene product Predicted metal-dependent phosphoesterases (PHP family)
SynRCC307_1285 Gene product Predicted Zn-dependent peptidase
Blast Hits [nr] ref|ZP_01085608.1| Possible Zn-dependent peptidase [Synechococcus sp. WH 5701] gi|87282680|gb|EAQ74638.1| Possible Zn-dependent peptidase [Synechococcus sp. WH 5701]
SynRCC307_1286 Gene product Predicted Zn-dependent peptidase
SynRCC307_1297 Gene product SAM-dependent methyltransferase
GO term Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)
Blast Hits [TAIR_pep] AT1G76090.1 | Symbols: SMT3 | SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase | chr1:28550592-28551671 REVERSE
SynRCC307_1352 Gene product Folate-dependent Phosphoribosylglycinamide formyltransferase PurN
SynRCC307_1404 Gene product ATP-dependent Clp protease proteolytic subunit
Blast Hits [nr] ref|ZP_01124113.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805] gi|88787591|gb|EAR18748.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp. WH 7805]
Blast Hits [sprot] CLPP3_PROMM (sp|Q7V7R2) ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP3 PE=3 SV=1
SynRCC307_1408 Gene product ATP-dependent Clp protease adaptor
Blast Hits [nr] ref|YP_001804977.1| putative ATP-dependent Clp protease, adaptor protein [Cyanothece sp. ATCC 51142] gi|171699930|gb|ACB52911.1| putative ATP-dependent Clp protease, adaptor protein [Cyanothece sp. ATCC 51142]
Blast Hits [sprot] CLPS_SYNY3 (sp|P73634) ATP-dependent Clp protease adapter protein clpS OS=Synechocystis sp. (strain PCC 6803) GN=clpS PE=3 SV=1
SynRCC307_1420 Gene product SAM-dependent methyltransferase
SynRCC307_1506 Gene product SAM-dependent methyltransferase
SynRCC307_1538 Gene product Predicted NAD/FAD-dependent oxidoreductase
SynRCC307_1579 Gene product Zn-dependent membrane associated protease
SynRCC307_1611 Gene product Predicted Zn-dependent protease
SynRCC307_1673 Gene product Sodium-dependent transporter of the SNF family
Blast Hits [nr] ref|ZP_01468357.1| putative sodium-dependent transporter, NSS family protein [Synechococcus sp. BL107] gi|116066493|gb|EAU72250.1| putative sodium-dependent transporter, NSS family protein [Synechococcus sp. BL107]
Blast Hits [sprot] YOCR_BACSU (sp|O34383) Uncharacterized sodium-dependent transporter yocR OS=Bacillus subtilis GN=yocR PE=3 SV=1
SynRCC307_1885 Gene product SAM-dependent methyltransferase
SynRCC307_1926 Gene product Putative SAM-dependent methyltransferase
SynRCC307_1946 Gene product Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division
SynRCC307_2103 Gene product Possible metal-dependent protease of the PAD1/JAB1 superfamily
SynRCC307_2108 Gene product Possible ATP-dependent DNA helicase
Blast Hits [sprot] YOAA_ECOLI (sp|P76257) Probable ATP-dependent helicase yoaA OS=Escherichia coli (strain K12) GN=yoaA PE=3 SV=1
SynRCC307_2164 Gene product Ferredoxin-dependent glutamate synthase
Blast Hits [sprot] GLTS_SYNY3 (sp|P55038) Ferredoxin-dependent glutamate synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gltS PE=1 SV=2
SynRCC307_2180 Gene product ATP-dependent Clp protease adaptor protein ClpS
Blast Hits [nr] ref|NP_898239.2| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp. WH 8102]
Blast Hits [sprot] CLPS_SYNS9 (sp|Q3AUR5) ATP-dependent Clp protease adapter protein clpS OS=Synechococcus sp. (strain CC9902) GN=clpS PE=3 SV=1
SynRCC307_2243 Gene product Putative Zn-dependent hydrolase of the metallo-beta-lactamase superfamily
Blast Hits [sprot] Y764_THEAC (sp|Q9HK42) UPF0173 metal-dependent hydrolase Ta0764 OS=Thermoplasma acidophilum GN=Ta0764 PE=3 SV=2
SynRCC307_2246 Gene product Predicted metal-dependent hydrolase
SynRCC307_2269 Gene product SAM-dependent methyltransferase
SynRCC307_2379 Gene product Putative cAMP-binding domain-Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
Blast Hits [nr] ref|YP_001226114.1| cAMP-dependent protein kinase activator/regulatory subunit [Synechococcus sp. WH 7803] gi|147849266|emb|CAK24817.1| Putative cAMP-binding domain-Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase [Synechococcus sp. WH 7803]
SynRCC307_0010 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0011 GO term Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614)
SynRCC307_0088 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0098 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0113 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0226 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0235 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0250 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0256 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0313 GO term Biological Process: maintenance of fidelity during DNA-dependent DNA replication (GO:0045005)
SynRCC307_0429 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0431 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0460 GO term Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)
SynRCC307_0563 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0566 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0779 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0888 GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
SynRCC307_0889 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0901 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0959 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_0985 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1009 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1201 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1330 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1433 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Blast Hits [TAIR_pep] AT1G08840.1 | Symbols: emb2411 | emb2411 (embryo defective 2411); ATP binding / ATP-dependent DNA helicase/ DNA binding | chr1:2829579-2838369 REVERSE
SynRCC307_1454 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1465 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
SynRCC307_1546 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1556 GO term Molecular Function: ATP-dependent DNA helicase activity (GO:0004003)
Blast Hits [TAIR_pep] AT4G25120.1 | Symbols: | ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase | chr4:12890694-12898309 FORWARD
SynRCC307_1609 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1621 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1627 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1637 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1704 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1708 GO term Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614)
SynRCC307_1710 GO term Molecular Function: ATP-dependent DNA helicase activity (GO:0004003)
SynRCC307_1744 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1788 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2111 GO term Molecular Function: DNA-dependent ATPase activity (GO:0008094)
SynRCC307_2139 GO term Biological Process: transcription, DNA-dependent (GO:0006351)
SynRCC307_2172 GO term Molecular Function: ATP-dependent peptidase activity (GO:0004176)
Blast Hits [TAIR_pep] AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain-containing protein | chr1:28327986-28328822 FORWARD
Blast Hits [nr] ref|ZP_01084703.1| ATP-dependent protease La (LON) domain [Synechococcus sp. WH 5701] gi|87283437|gb|EAQ75392.1| ATP-dependent protease La (LON) domain [Synechococcus sp. WH 5701]
Blast Hits [sprot] LON2_MYXXA (sp|P36774) ATP-dependent protease La 2 OS=Myxococcus xanthus GN=lonD PE=1 SV=3
SynRCC307_2261 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2272 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2319 GO term Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288)
SynRCC307_2344 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2359 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2412 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2419 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2439 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_2504 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1811 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
SynRCC307_1851 GO term Biological Process: transcription, DNA-dependent (GO:0006351)
SynRCC307_1923 GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
Blast Hits [TAIR_pep] AT1G70070.1 | Symbols: EMB25, PDE317, ISE2 | EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent helicase/ RNA helicase | chr1:26390016-26394148 REVERSE
Blast Hits [sprot] ISE2_ARATH (sp|B9DFG3) DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
SynRCC307_0035 Blast Hits [nr] ref|ZP_05045673.1| NAD dependent epimerase/dehydratase [Cyanobium sp. PCC 7001] gi|197626423|gb|EDY38982.1| NAD dependent epimerase/dehydratase [Cyanobium sp. PCC 7001]
SynRCC307_0872 Blast Hits [nr] ref|ZP_05044493.1| SAM-dependent methyltransferase [Cyanobium sp. PCC 7001] gi|197625243|gb|EDY37802.1| SAM-dependent methyltransferase [Cyanobium sp. PCC 7001]
SynRCC307_0906 Blast Hits [nr] ref|YP_731101.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. CC9311] gi|113880988|gb|ABI45946.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. CC9311]
SynRCC307_1308 Blast Hits [nr] ref|ZP_01472526.1| Zn-dependent protease [Synechococcus sp. RS9916] gi|116067463|gb|EAU73217.1| Zn-dependent protease [Synechococcus sp. RS9916]
SynRCC307_1402 Blast Hits [TAIR_pep] AT1G06430.1 | Symbols: FTSH8 | FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding | chr1:1960214-1962525 REVERSE
Blast Hits [nr] ref|ZP_01085549.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH 5701] gi|87282621|gb|EAQ74579.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH 5701]
SynRCC307_1541 Blast Hits [nr] ref|NP_896992.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. WH 8102] gi|81574825|sp|Q7U7T2.1|TRMFO_SYNPX RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO; AltName: Full=Folate-dependent tRNA (uracil-5-)-methyltransferase; AltName: Full=Folate-dependent tRNA(M-5-U54)-methyltransferase gi|33632602|emb|CAE07414.1| probable glucose inhibited division protein [Synechococcus sp. WH 8102]
SynRCC307_1832 Blast Hits [nr] ref|ZP_01988810.1| putative manganese-dependent inorganic pyrophosphatase [Vibrio parahaemolyticus AQ3810] gi|149750418|gb|EDM61163.1| putative manganese-dependent inorganic pyrophosphatase [Vibrio parahaemolyticus AQ3810]
Blast Hits [sprot] PPAC_ARCFU (sp|O29502) Probable manganese-dependent inorganic pyrophosphatase OS=Archaeoglobus fulgidus GN=ppaC PE=3 SV=1
SynRCC307_2193 Blast Hits [TAIR_pep] AT5G42270.1 | Symbols: VAR1, FTSH5 | VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | chr5:16902659-16905102 FORWARD
Blast Hits [nr] ref|ZP_05045930.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001] gi|197626680|gb|EDY39239.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001]
SynRCC307_0053 Blast Hits [sprot] MGTA_CORGL (sp|Q8NT41) GDP-mannose-dependent alpha-mannosyltransferase OS=Corynebacterium glutamicum GN=mgtA PE=1 SV=1
SynRCC307_0124 Blast Hits [sprot] RUVB_SYNS3 (sp|Q0IDW1) Holliday junction ATP-dependent DNA helicase ruvB OS=Synechococcus sp. (strain CC9311) GN=ruvB PE=3 SV=1
SynRCC307_0378 Blast Hits [sprot] GPMI_SYNY3 (sp|P74507) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechocystis sp. (strain PCC 6803) GN=gpmI PE=3 SV=1
SynRCC307_0528 Blast Hits [sprot] BCHB_CHLCH (sp|Q3APL0) Light-independent protochlorophyllide reductase subunit B OS=Chlorobium chlorochromatii (strain CaD3) GN=bchB PE=3 SV=1
SynRCC307_0628 Blast Hits [sprot] GPMI_STAHJ (sp|Q4L4K6) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gpmI PE=3 SV=1
SynRCC307_0716 Blast Hits [sprot] ENGD_BACSU (sp|P37518) GTP-dependent nucleic acid-binding protein engD OS=Bacillus subtilis GN=engD PE=3 SV=1
SynRCC307_0753 Blast Hits [sprot] DDA_BPT4 (sp|P32270) ATP-dependent DNA helicase dda OS=Enterobacteria phage T4 GN=dda PE=1 SV=2
SynRCC307_0930 Blast Hits [sprot] Y736_HAEIN (sp|P44849) Uncharacterized sodium-dependent transporter HI_0736 OS=Haemophilus influenzae GN=HI_0736 PE=3 SV=1
SynRCC307_1091 Blast Hits [sprot] YMN3_YEAST (sp|Q03099) Y' element ATP-dependent helicase YML133C OS=Saccharomyces cerevisiae GN=YML133C PE=2 SV=1
SynRCC307_1132 Blast Hits [sprot] RUVB_AKKM8 (sp|B2UPI9) Holliday junction ATP-dependent DNA helicase ruvB OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ruvB PE=3 SV=1
SynRCC307_1322 Blast Hits [sprot] RUVA_CYAP7 (sp|B7K970) Holliday junction ATP-dependent DNA helicase ruvA OS=Cyanothece sp. (strain PCC 7424) GN=ruvA PE=3 SV=1
SynRCC307_1596 Blast Hits [sprot] YOR1_YEAST (sp|P53049) Oligomycin resistance ATP-dependent permease YOR1 OS=Saccharomyces cerevisiae GN=YOR1 PE=1 SV=1
SynRCC307_1916 Blast Hits [sprot] NADE1_DROME (sp|Q9VYA0) Probable glutamine-dependent NAD(+) synthetase OS=Drosophila melanogaster GN=CG9940 PE=1 SV=1
SynRCC307_1974 Blast Hits [sprot] ADDB_LEUMM (sp|Q03W48) ATP-dependent helicase/deoxyribonuclease subunit B OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rexB PE=3 SV=1
SynRCC307_2017 Blast Hits [sprot] Y075_SYNY3 (sp|Q55791) Probable ATP-dependent transporter slr0075 OS=Synechocystis sp. (strain PCC 6803) GN=slr0075 PE=3 SV=1
SynRCC307_2299 Blast Hits [sprot] Y2229_RHOS5 (sp|A4WUQ5) UPF0173 metal-dependent hydrolase Rsph17025_2229 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=Rsph17025_2229 PE=3 SV=1
SynRCC307_2381 Blast Hits [sprot] YWQA_BACSU (sp|P94593) Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2
SynRCC307_2402 Blast Hits [sprot] DBP5_ASPCL (sp|A1CFV3) ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus GN=dbp5 PE=3 SV=1
SynRCC307_2469 Blast Hits [sprot] ALKB2_MOUSE (sp|Q6P6J4) Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1
SynRCC307_0074 Blast Hits [TAIR_pep] AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | chr3:7892641-7895145 FORWARD
SynRCC307_0154 Blast Hits [TAIR_pep] AT2G06990.1 | Symbols: HEN2 | HEN2 (hua enhancer 2); ATP-dependent helicase/ RNA helicase | chr2:2895135-2900909 FORWARD
SynRCC307_0175 Blast Hits [TAIR_pep] AT3G47340.1 | Symbols: ASN1, DIN6, AT-ASN1 | ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1); asparagine synthase (glutamine-hydrolyzing) | chr3:17438136-17441043 REVERSE
SynRCC307_0350 Blast Hits [TAIR_pep] AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding | chr2:5909240-5913817 FORWARD
SynRCC307_0383 Blast Hits [TAIR_pep] AT5G22750.1 | Symbols: RAD5 | RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding | chr5:7565374-7570871 REVERSE
SynRCC307_0411 Blast Hits [TAIR_pep] AT2G26140.1 | Symbols: ftsh4 | ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase | chr2:11131939-11135126 REVERSE
SynRCC307_0419 Blast Hits [TAIR_pep] AT3G16250.1 | Symbols: NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding | chr3:5507091-5508320 REVERSE
SynRCC307_0422 Blast Hits [TAIR_pep] AT2G17290.1 | Symbols: CPK6, ATCDPK3 | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase | chr2:7517005-7519239 FORWARD
SynRCC307_0437 Blast Hits [TAIR_pep] AT5G24020.1 | Symbols: MIND, ARC11, ATMIND1 | MIND; ATPase/ calcium-dependent ATPase/ protein binding / protein homodimerization | chr5:8116731-8117711 FORWARD
SynRCC307_0456 Blast Hits [TAIR_pep] AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding | chr3:1941066-1946700 FORWARD
SynRCC307_0465 Blast Hits [TAIR_pep] AT5G35930.1 | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:14067197-14074404 REVERSE
SynRCC307_0524 Blast Hits [TAIR_pep] AT3G56170.1 | Symbols: CAN | CAN (CA-2+ DEPENDENT NUCLEASE); nuclease | chr3:20842614-20844319 FORWARD
SynRCC307_0530 Blast Hits [TAIR_pep] AT5G35930.1 | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:14067197-14074404 REVERSE
SynRCC307_0635 Blast Hits [TAIR_pep] AT2G30950.1 | Symbols: VAR2, FTSH2 | VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding | chr2:13174692-13177064 FORWARD
SynRCC307_0697 Blast Hits [TAIR_pep] AT3G05780.1 | Symbols: LON3 | LON3 (LON PROTEASE 3); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase/ serine-type peptidase | chr3:1714941-1719608 REVERSE
SynRCC307_0809 Blast Hits [TAIR_pep] AT1G03190.2 | Symbols: ATXPD, UVH6 | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding | chr1:775822-779863 FORWARD
SynRCC307_0855 Blast Hits [TAIR_pep] AT1G20720.1 | Symbols: | ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding | chr1:7185658-7192794 REVERSE
SynRCC307_0871 Blast Hits [TAIR_pep] AT3G16250.1 | Symbols: NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding | chr3:5507091-5508320 REVERSE
SynRCC307_1062 Blast Hits [TAIR_pep] AT1G50700.1 | Symbols: CPK33 | CPK33; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase | chr1:18782214-18784385 FORWARD
SynRCC307_1063 Blast Hits [TAIR_pep] AT1G22550.1 | Symbols: | proton-dependent oligopeptide transport (POT) family protein | chr1:7966608-7968552 REVERSE
SynRCC307_1093 Blast Hits [TAIR_pep] AT5G41970.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent protein hydrolase (InterPro:IPR003226); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49320.1); Has 464 Blast hits to 461 proteins in 209 species: Archae - 0; Bacteria - 122; Metazoa - 131; Fungi - 87; Plants - 29; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr5:16791198-16792961 FORWARD
SynRCC307_1126 Blast Hits [TAIR_pep] AT5G10440.1 | Symbols: CYCD4;2 | CYCD4;2 (cyclin d4;2); cyclin-dependent protein kinase | chr5:3280611-3282342 REVERSE
SynRCC307_1435 Blast Hits [TAIR_pep] AT3G45720.1 | Symbols: | proton-dependent oligopeptide transport (POT) family protein | chr3:16785046-16786945 FORWARD
SynRCC307_1479 Blast Hits [TAIR_pep] AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III | chr1:23519-31079 FORWARD
SynRCC307_1489 Blast Hits [TAIR_pep] AT2G30950.1 | Symbols: VAR2, FTSH2 | VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding | chr2:13174692-13177064 FORWARD
SynRCC307_1563 Blast Hits [TAIR_pep] AT1G49250.1 | Symbols: | ATP dependent DNA ligase family protein | chr1:18220533-18224256 FORWARD
SynRCC307_1655 Blast Hits [TAIR_pep] AT1G50700.1 | Symbols: CPK33 | CPK33; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase | chr1:18782214-18784385 FORWARD
SynRCC307_1699 Blast Hits [TAIR_pep] AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | chr1:3648032-3654997 REVERSE
SynRCC307_1715 Blast Hits [TAIR_pep] AT5G42270.1 | Symbols: VAR1, FTSH5 | VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | chr5:16902659-16905102 FORWARD
SynRCC307_1754 Blast Hits [TAIR_pep] AT1G50250.1 | Symbols: FTSH1 | FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | chr1:18614398-18616930 REVERSE
SynRCC307_1852 Blast Hits [TAIR_pep] AT5G39840.1 | Symbols: | ATP-dependent RNA helicase, mitochondrial, putative | chr5:15946769-15949186 FORWARD
SynRCC307_1904 Blast Hits [TAIR_pep] AT3G25280.1 | Symbols: | proton-dependent oligopeptide transport (POT) family protein | chr3:9206183-9208036 FORWARD
SynRCC307_1958 Blast Hits [TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE
SynRCC307_2006 Blast Hits [TAIR_pep] AT3G47340.2 | Symbols: ASN1, DIN6, AT-ASN1 | ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1); asparagine synthase (glutamine-hydrolyzing) | chr3:17438445-17441043 REVERSE
SynRCC307_2113 Blast Hits [TAIR_pep] AT1G73170.1 | Symbols: | ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase | chr1:27511722-27514783 REVERSE
SynRCC307_2514 Blast Hits [TAIR_pep] AT1G20330.1 | Symbols: SMT2, CVP1, FRL1 | SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase | chr1:7038968-7040053 REVERSE

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ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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