| Gene set by search |
TXT
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| SynRCC307_0079 | InterPro | IPR002644 Photosystem II reaction centre protein PsbZ; BlastProDom:PD004770 PSII_PsbZ |
| SynRCC307_0211 | InterPro | IPR016705 Photosystem II stability/assembly factor, HCF136; HMMPIR:PIRSF017875 PSII_HCF136 |
| SynRCC307_0417 | InterPro | IPR001743 Photosystem II protein PsbT; BlastProDom:PD004453 PSII_PsbT |
| Blast Hits | [TAIR_pep] ATCG00690.1 | Symbols: PSBT, PSBTC | Encodes photosystem II 5 kD protein subunit PSII-T. This is a plastid-encoded gene (PsbTc) which also has a nuclear-encoded paralog (PsbTn). | chrC:74082-74183 FORWARD | |
| Blast Hits | [nr] ref|YP_377866.1| photosystem II reaction center protein T [Synechococcus sp. CC9902] gi|123581117|sp|Q3AWF0.1|PSBT_SYNS9 RecName: Full=Photosystem II reaction center protein T; Short=PSII-T gi|78169725|gb|ABB26822.1| photosystem II reaction center T protein [Synechococcus sp. CC9902] | |
| SynRCC307_0418 | InterPro | IPR000932 Photosystem antenna protein-like; HMMPfam:PF00421 PSII |
| SynRCC307_1304 | InterPro | IPR005610 Photosystem II protein Psb28, class 1; BlastProDom:PD012692 PSII_Psb28_class-1 |
| SynRCC307_1696 | InterPro | IPR000932 Photosystem antenna protein-like; HMMPfam:PF00421 PSII |
| SynRCC307_2337 | InterPro | IPR003398 Photosystem II protein PsbN; BlastProDom:PD005510 PSII_PsbN |
| Blast Hits | [TAIR_pep] ATCG00700.1 | Symbols: PSBN | PSII low MW protein | chrC:74249-74380 REVERSE | |
| SynRCC307_2338 | InterPro | IPR001056 Photosystem II phosphoprotein PsbH; BlastProDom:PD003584 PSII_PsbH |
| Blast Hits | [TAIR_pep] ATCG00710.1 | Symbols: PSBH | Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII. | chrC:74485-74706 FORWARD | |
| Blast Hits | [nr] ref|YP_001867633.1| photosystem II reaction center protein H [Nostoc punctiforme PCC 73102] gi|226712046|sp|B2JA13.1|PSBH_NOSP7 RecName: Full=Photosystem II reaction center protein H; Short=PSII-H gi|186466889|gb|ACC82690.1| photosystem II phosphoprotein PsbH [Nostoc punctiforme PCC 73102] | |
| SynRCC307_0207 | Blast Hits | [TAIR_pep] ATCG00550.1 | Symbols: PSBJ | PSII component | chrC:63538-63660 REVERSE |
| Blast Hits | [nr] ref|YP_380528.1| photosystem II reaction center protein J [Synechococcus sp. CC9605] gi|123578943|sp|Q3AN59.1|PSBJ_SYNSC RecName: Full=Photosystem II reaction center protein J; Short=PSII-J gi|78196208|gb|ABB33973.1| putative photosystem II reaction center J protein [Synechococcus sp. CC9605] | |
| SynRCC307_0208 | Blast Hits | [TAIR_pep] ATCG00560.1 | Symbols: PSBL | PSII L protein | chrC:63804-63920 REVERSE |
| Blast Hits | [nr] ref|YP_002049136.1| cytochrome b559 subunit beta [Paulinella chromatophora] gi|212277656|sp|B1X4Q7.1|PSBL_PAUCH RecName: Full=Photosystem II reaction center protein L; Short=PSII-L; AltName: Full=PSII 5 kDa protein gi|171191964|gb|ACB42926.1| cytochrome b559 subunit beta [Paulinella chromatophora] | |
| SynRCC307_0259 | Blast Hits | [TAIR_pep] ATCG00270.1 | Symbols: PSBD | PSII D2 protein | chrC:32711-33772 FORWARD |
| Blast Hits | [nr] ref|YP_002048703.1| Photosystem II D2 protein [Paulinella chromatophora] gi|194476772|ref|YP_002048951.1| photosystem II D2 protein [Paulinella chromatophora] gi|221222707|sp|B1X3H4.1|PSBD_PAUCH RecName: Full=Photosystem II D2 protein; Short=PSII D2 protein; AltName: Full=Photosystem Q(A) protein gi|171191531|gb|ACB42493.1| Photosystem II D2 protein [Paulinella chromatophora] gi|171191779|gb|ACB42741.1| photosystem II D2 protein [Paulinella chromatophora] | |
| SynRCC307_1695 | Blast Hits | [TAIR_pep] ATCG00270.1 | Symbols: PSBD | PSII D2 protein | chrC:32711-33772 FORWARD |
| Blast Hits | [nr] ref|YP_002048703.1| Photosystem II D2 protein [Paulinella chromatophora] gi|194476772|ref|YP_002048951.1| photosystem II D2 protein [Paulinella chromatophora] gi|221222707|sp|B1X3H4.1|PSBD_PAUCH RecName: Full=Photosystem II D2 protein; Short=PSII D2 protein; AltName: Full=Photosystem Q(A) protein gi|171191531|gb|ACB42493.1| Photosystem II D2 protein [Paulinella chromatophora] gi|171191779|gb|ACB42741.1| photosystem II D2 protein [Paulinella chromatophora] | |
| SynRCC307_2335 | Blast Hits | [TAIR_pep] ATCG00080.1 | Symbols: PSBI | PSII I protein | chrC:7583-7693 FORWARD |
| Blast Hits | [nr] ref|YP_378085.1| photosystem II reaction center I protein I [Synechococcus sp. CC9902] gi|78211812|ref|YP_380591.1| photosystem II reaction center I protein I [Synechococcus sp. CC9605] gi|87125095|ref|ZP_01080942.1| hypothetical protein RS9917_03798 [Synechococcus sp. RS9917] gi|88808014|ref|ZP_01123525.1| hypothetical protein WH7805_07626 [Synechococcus sp. WH 7805] gi|113952926|ref|YP_729541.1| photosystem II reaction center I protein I [Synechococcus sp. CC9311] gi|116075618|ref|ZP_01472877.1| hypothetical protein RS9916_39171 [Synechococcus sp. RS9916] gi|148238646|ref|YP_001224033.1| photosystem II reaction center I protein I [Synechococcus sp. WH 7803] gi|260435637|ref|ZP_05789607.1| conserved domain protein [Synechococcus sp. WH 8109] gi|123031898|sp|Q0IDD1.1|PSBI_SYNS3 RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|123578904|sp|Q3AMZ6.1|PSBI_SYNSC RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|123581031|sp|Q3AW25.1|PSBI_SYNS9 RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|156633582|sp|A5GIH1.1|PSBI_SYNPW RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|78169945|gb|ABB27042.1| photosystem II reaction center I protein (PsbI) [Synechococcus sp. CC9902] gi|78196271|gb|ABB34036.1| photosystem II reaction center I protein (PsbI) [Synechococcus sp. CC9605] gi|86167415|gb|EAQ68675.1| hypothetical protein RS9917_03798 [Synechococcus sp. RS9917] gi|88788053|gb|EAR19209.1| hypothetical protein WH7805_07626 [Synechococcus sp. WH 7805] gi|113880277|gb|ABI45235.1| photosystem II reaction center I protein [Synechococcus sp. CC9311] gi|116066933|gb|EAU72688.1| hypothetical protein RS9916_39171 [Synechococcus sp. RS9916] gi|147847185|emb|CAK22736.1| Photosystem II reaction center I protein [Synechococcus sp. WH 7803] gi|260413511|gb|EEX06807.1| conserved domain protein [Synechococcus sp. WH 8109] | |
| SynRCC307_0209 | Blast Hits | [TAIR_pep] ATCG00570.1 | Symbols: PSBF | PSII cytochrome b559 | chrC:63942-64061 REVERSE |
| SynRCC307_0210 | Blast Hits | [TAIR_pep] ATCG00580.1 | Symbols: PSBE | PSII cytochrome b559. There have been many speculations about the function of Cyt b559, but the most favored at present is that it plays a protective role by acting as an electron acceptor or electron donor under conditions when electron flow through PSII is not optimized. | chrC:64071-64322 REVERSE |
| SynRCC307_0420 | Blast Hits | [TAIR_pep] ATCG00220.1 | Symbols: PSBM | PSII low MW protein | chrC:28707-28811 REVERSE |
| SynRCC307_1694 | Blast Hits | [TAIR_pep] ATCG00520.1 | Symbols: YCF4 | Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth. | chrC:59772-60326 FORWARD |
| SynRCC307_1803 | Blast Hits | [TAIR_pep] AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting complex PSII); chlorophyll binding | chr2:16745884-16747190 FORWARD |
| SynRCC307_1971 | Blast Hits | [TAIR_pep] AT4G28740.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LPA1 (LOW PSII ACCUMULATION1); binding (TAIR:AT1G02910.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:14201051-14202542 FORWARD |
| SynRCC307_2310 | Blast Hits | [TAIR_pep] ATCG00070.1 | Symbols: PSBK | PSII K protein | chrC:7017-7202 FORWARD |
| Gene set by search |
TXT
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