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SynRCC307_0222
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GO term |
Biological Process: DNA unwinding during replication (GO:0006268) |
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SynRCC307_0313
|
GO term |
Biological Process: maintenance of fidelity during DNA-dependent DNA replication (GO:0045005) |
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SynRCC307_0660
|
GO term |
Biological Process: DNA unwinding during replication (GO:0006268) |
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SynRCC307_2440
|
Blast Hits |
[nr] ref|ZP_05045585.1| DNA protection during starvation protein 2 [Cyanobium sp. PCC 7001] gi|197626335|gb|EDY38894.1| DNA protection during starvation protein 2 [Cyanobium sp. PCC 7001] |
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SynRCC307_0017
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Blast Hits |
[TAIR_pep] AT5G39940.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HI0933-like protein (InterPro:IPR004792); Has 2776 Blast hits to 2776 proteins in 871 species: Archae - 18; Bacteria - 1933; Metazoa - 0; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 804 (source: NCBI BLink). | chr5:15987649-15990561 FORWARD |
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SynRCC307_0051
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Blast Hits |
[TAIR_pep] AT4G17140.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2). | chr4:9613617-9636618 REVERSE |
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SynRCC307_0057
|
Blast Hits |
[TAIR_pep] AT4G32910.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup85-like (InterPro:IPR011502); Has 161 Blast hits to 158 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 10; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:15881364-15885210 FORWARD |
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SynRCC307_0093
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Blast Hits |
[TAIR_pep] AT1G21670.1 | Symbols: | INVOLVED IN: proteolysis; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21680.1); Has 6126 Blast hits to 3685 proteins in 788 species: Archae - 47; Bacteria - 3362; Metazoa - 27; Fungi - 47; Plants - 58; Viruses - 0; Other Eukaryotes - 2585 (source: NCBI BLink). | chr1:7610409-7612520 FORWARD |
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SynRCC307_0138
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Blast Hits |
[TAIR_pep] AT1G29790.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 127 Blast hits to 127 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10430025-10431161 FORWARD |
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SynRCC307_0168
|
Blast Hits |
[TAIR_pep] AT2G41800.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41810.1); Has 156 Blast hits to 155 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17436671-17438005 REVERSE |
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SynRCC307_0184
|
Blast Hits |
[TAIR_pep] AT4G28910.3 | Symbols: | LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink). | chr4:14264330-14265680 REVERSE |
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SynRCC307_0276
|
Blast Hits |
[TAIR_pep] AT1G02475.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01883.1); Has 350 Blast hits to 350 proteins in 105 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). | chr1:514110-515331 REVERSE |
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SynRCC307_0295
|
Blast Hits |
[TAIR_pep] AT2G23390.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 1806 Blast hits to 1806 proteins in 374 species: Archae - 0; Bacteria - 707; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink). | chr2:9960568-9963476 REVERSE |
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SynRCC307_0302
|
Blast Hits |
[TAIR_pep] AT4G35760.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 447 Blast hits to 447 proteins in 86 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). | chr4:16942733-16944622 REVERSE |
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SynRCC307_0317
|
Blast Hits |
[TAIR_pep] AT4G35760.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 447 Blast hits to 447 proteins in 86 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). | chr4:16942733-16944622 REVERSE |
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SynRCC307_0321
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Blast Hits |
[TAIR_pep] AT5G65840.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37240.1); Has 167 Blast hits to 165 proteins in 51 species: Archae - 0; Bacteria - 28; Metazoa - 51; Fungi - 13; Plants - 59; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr5:26344097-26346057 REVERSE |
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SynRCC307_0338
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Blast Hits |
[TAIR_pep] AT2G38570.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 29 Blast hits to 29 proteins in 13 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16136854-16138417 REVERSE |
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SynRCC307_0503
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Blast Hits |
[TAIR_pep] AT1G62050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 967 Blast hits to 722 proteins in 118 species: Archae - 0; Bacteria - 24; Metazoa - 556; Fungi - 45; Plants - 193; Viruses - 2; Other Eukaryotes - 147 (source: NCBI BLink). | chr1:22936323-22938874 REVERSE |
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SynRCC307_0515
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Blast Hits |
[TAIR_pep] AT1G67960.1 | Symbols: | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 243 Blast hits to 229 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 87; Plants - 18; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). | chr1:25480808-25484176 REVERSE |
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SynRCC307_0529
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Blast Hits |
[TAIR_pep] AT1G54460.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WDL1 (TAIR:AT3G04630.3); Has 393 Blast hits to 375 proteins in 76 species: Archae - 0; Bacteria - 3; Metazoa - 143; Fungi - 38; Plants - 160; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:20340907-20342900 REVERSE |
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SynRCC307_0623
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Blast Hits |
[TAIR_pep] AT4G08280.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin 2 (InterPro:IPR008554), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 214 Blast hits to 214 proteins in 65 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | chr4:5230345-5231196 FORWARD |
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SynRCC307_0639
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Blast Hits |
[TAIR_pep] AT5G01710.1 | Symbols: | LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT4G24805.1); Has 224 Blast hits to 223 proteins in 16 species: Archae - 0; Bacteria - 7; Metazoa - 38; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | chr5:263709-265250 REVERSE |
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SynRCC307_0730
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Blast Hits |
[TAIR_pep] AT5G06930.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3144 Blast hits to 1363 proteins in 247 species: Archae - 2; Bacteria - 721; Metazoa - 835; Fungi - 297; Plants - 80; Viruses - 10; Other Eukaryotes - 1199 (source: NCBI BLink). | chr5:2145139-2147849 FORWARD |
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SynRCC307_0752
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Blast Hits |
[TAIR_pep] AT1G24350.1 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink). | chr1:8639098-8640313 REVERSE |
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SynRCC307_0761
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Blast Hits |
[TAIR_pep] AT4G01650.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink). | chr4:704578-705866 REVERSE |
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SynRCC307_0799
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Blast Hits |
[TAIR_pep] AT5G10620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SPOUT methyltransferase, predicted (InterPro:IPR003742); Has 3142 Blast hits to 3142 proteins in 1101 species: Archae - 27; Bacteria - 2338; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). | chr5:3355466-3356615 REVERSE |
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SynRCC307_0824
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Blast Hits |
[TAIR_pep] AT1G29980.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34510.1); Has 180 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10503411-10505994 REVERSE |
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SynRCC307_0825
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Blast Hits |
[TAIR_pep] AT5G55660.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species: Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source: NCBI BLink). | chr5:22539375-22543142 FORWARD |
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SynRCC307_0849
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Blast Hits |
[TAIR_pep] AT1G49870.2 | Symbols: | EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: MBD10; DNA binding / methyl-CpG binding (TAIR:AT1G15340.1); Has 5464 Blast hits to 4072 proteins in 370 species: Archae - 26; Bacteria - 408; Metazoa - 2785; Fungi - 288; Plants - 146; Viruses - 7; Other Eukaryotes - 1804 (source: NCBI BLink). | chr1:18460911-18463557 FORWARD |
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SynRCC307_0868
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Blast Hits |
[TAIR_pep] AT1G28260.2 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SMG7 (TAIR:AT5G19400.1); Has 341 Blast hits to 340 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:9875776-9878782 REVERSE |
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SynRCC307_0887
|
Blast Hits |
[TAIR_pep] AT3G26580.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026); Has 2147 Blast hits to 1154 proteins in 168 species: Archae - 2; Bacteria - 99; Metazoa - 1301; Fungi - 180; Plants - 105; Viruses - 57; Other Eukaryotes - 403 (source: NCBI BLink). | chr3:9758933-9760349 FORWARD |
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SynRCC307_0905
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Blast Hits |
[TAIR_pep] AT5G24710.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 46946 Blast hits to 23834 proteins in 1336 species: Archae - 160; Bacteria - 9572; Metazoa - 15324; Fungi - 6794; Plants - 1938; Viruses - 1106; Other Eukaryotes - 12052 (source: NCBI BLink). | chr5:8459148-8467920 REVERSE |
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SynRCC307_0947
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Blast Hits |
[TAIR_pep] AT1G42440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06720.1); Has 2447 Blast hits to 1812 proteins in 205 species: Archae - 0; Bacteria - 115; Metazoa - 903; Fungi - 423; Plants - 100; Viruses - 53; Other Eukaryotes - 853 (source: NCBI BLink). | chr1:15895528-15899939 REVERSE |
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SynRCC307_0982
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Blast Hits |
[TAIR_pep] AT3G12930.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 2517 Blast hits to 2517 proteins in 833 species: Archae - 0; Bacteria - 1551; Metazoa - 22; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink). | chr3:4128465-4129616 FORWARD |
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SynRCC307_0986
|
Blast Hits |
[TAIR_pep] AT5G38690.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), DDT subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67780.1); Has 492 Blast hits to 468 proteins in 97 species: Archae - 9; Bacteria - 41; Metazoa - 179; Fungi - 19; Plants - 99; Viruses - 2; Other Eukaryotes - 143 (source: NCBI BLink). | chr5:15479424-15482992 REVERSE |
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SynRCC307_0988
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Blast Hits |
[TAIR_pep] AT5G56240.1 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HAP8 (HAPLESS 8) (TAIR:AT5G56250.2); Has 259 Blast hits to 240 proteins in 69 species: Archae - 0; Bacteria - 13; Metazoa - 67; Fungi - 34; Plants - 31; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr5:22760088-22763539 REVERSE |
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SynRCC307_1004
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Blast Hits |
[TAIR_pep] AT3G62500.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, embryo; EXPRESSED DURING: D bilateral stage; BEST Arabidopsis thaliana protein match is: SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding (TAIR:AT3G61740.2); Has 30 Blast hits to 30 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23120423-23122222 FORWARD |
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SynRCC307_1069
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Blast Hits |
[TAIR_pep] AT4G10800.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G05675.2); Has 114 Blast hits to 114 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:6643678-6644529 FORWARD |
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SynRCC307_1093
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Blast Hits |
[TAIR_pep] AT5G41970.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent protein hydrolase (InterPro:IPR003226); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49320.1); Has 464 Blast hits to 461 proteins in 209 species: Archae - 0; Bacteria - 122; Metazoa - 131; Fungi - 87; Plants - 29; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr5:16791198-16792961 FORWARD |
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SynRCC307_1104
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Blast Hits |
[TAIR_pep] AT5G24280.1 | Symbols: | EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) (TAIR:AT3G49250.1); Has 61 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:8251378-8261428 REVERSE |
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SynRCC307_1171
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Blast Hits |
[TAIR_pep] AT1G19130.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 778 Blast hits to 778 proteins in 280 species: Archae - 8; Bacteria - 513; Metazoa - 2; Fungi - 16; Plants - 22; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). | chr1:6609545-6610555 REVERSE |
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SynRCC307_1176
|
Blast Hits |
[TAIR_pep] AT5G24740.1 | Symbols: | INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2); Has 1782 Blast hits to 981 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1018; Fungi - 290; Plants - 104; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink). | chr5:8470073-8489703 REVERSE |
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SynRCC307_1180
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Blast Hits |
[TAIR_pep] AT5G50100.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336), Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); Has 598 Blast hits to 598 proteins in 152 species: Archae - 0; Bacteria - 266; Metazoa - 3; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr5:20371916-20373172 FORWARD |
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SynRCC307_1234
|
Blast Hits |
[TAIR_pep] AT5G14990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G34730.1); Has 6898 Blast hits to 4935 proteins in 410 species: Archae - 63; Bacteria - 379; Metazoa - 3405; Fungi - 417; Plants - 182; Viruses - 15; Other Eukaryotes - 2437 (source: NCBI BLink). | chr5:4850764-4853003 FORWARD |
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SynRCC307_1284
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Blast Hits |
[TAIR_pep] AT5G11640.1 | Symbols: | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 154 Blast hits to 154 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:3742008-3743703 FORWARD |
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SynRCC307_1303
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Blast Hits |
[TAIR_pep] AT4G24750.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G08920.1); Has 222 Blast hits to 222 proteins in 59 species: Archae - 8; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr4:12758422-12760749 REVERSE |
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SynRCC307_1309
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Blast Hits |
[TAIR_pep] AT5G63830.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 339 Blast hits to 334 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 84; Plants - 29; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | chr5:25543585-25544802 REVERSE |
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SynRCC307_1316
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Blast Hits |
[TAIR_pep] AT2G22660.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G37900.1); Has 14843 Blast hits to 4550 proteins in 469 species: Archae - 40; Bacteria - 5555; Metazoa - 4422; Fungi - 897; Plants - 1977; Viruses - 191; Other Eukaryotes - 1761 (source: NCBI BLink). | chr2:9627737-9630840 FORWARD |
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SynRCC307_1408
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Blast Hits |
[TAIR_pep] AT1G68660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). | chr1:25778058-25779083 REVERSE |
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SynRCC307_1466
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Blast Hits |
[TAIR_pep] AT2G26200.1 | Symbols: | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT1G54650.1); Has 1504 Blast hits to 1429 proteins in 277 species: Archae - 33; Bacteria - 213; Metazoa - 664; Fungi - 202; Plants - 139; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink). | chr2:11152875-11156330 FORWARD |
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SynRCC307_1474
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Blast Hits |
[TAIR_pep] AT3G49990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Low temperature viability protein (InterPro:IPR007307); Has 1404 Blast hits to 1163 proteins in 173 species: Archae - 5; Bacteria - 61; Metazoa - 489; Fungi - 146; Plants - 69; Viruses - 17; Other Eukaryotes - 617 (source: NCBI BLink). | chr3:18532492-18534000 REVERSE |
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SynRCC307_1506
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Blast Hits |
[TAIR_pep] AT2G26200.1 | Symbols: | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT1G54650.1); Has 1504 Blast hits to 1429 proteins in 277 species: Archae - 33; Bacteria - 213; Metazoa - 664; Fungi - 202; Plants - 139; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink). | chr2:11152875-11156330 FORWARD |
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SynRCC307_1526
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Blast Hits |
[TAIR_pep] AT4G17080.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (TAIR:AT2G35170.1); Has 18005 Blast hits to 5199 proteins in 343 species: Archae - 0; Bacteria - 1726; Metazoa - 3046; Fungi - 93; Plants - 653; Viruses - 0; Other Eukaryotes - 12487 (source: NCBI BLink). | chr4:9601570-9603815 FORWARD |
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SynRCC307_1548
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Blast Hits |
[TAIR_pep] AT4G10300.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04300.1); Has 356 Blast hits to 356 proteins in 93 species: Archae - 0; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr4:6384564-6385946 FORWARD |
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SynRCC307_1553
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Blast Hits |
[TAIR_pep] AT1G55325.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAP240 (InterPro:IPR009401); Has 190 Blast hits to 182 proteins in 65 species: Archae - 0; Bacteria - 45; Metazoa - 113; Fungi - 3; Plants - 23; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:20637594-20646875 FORWARD |
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SynRCC307_1564
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Blast Hits |
[TAIR_pep] AT4G22980.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT5G51920.1); Has 294 Blast hits to 268 proteins in 91 species: Archae - 4; Bacteria - 15; Metazoa - 79; Fungi - 66; Plants - 107; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | chr4:12043974-12045653 REVERSE |
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SynRCC307_1621
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Blast Hits |
[TAIR_pep] AT4G31740.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: ATSLY1; protein transporter (TAIR:AT2G17980.1); Has 263 Blast hits to 263 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 85; Plants - 32; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | chr4:15363778-15364349 FORWARD |
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SynRCC307_1628
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Blast Hits |
[TAIR_pep] AT1G26520.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor L, putative (TAIR:AT1G15730.1); Has 5407 Blast hits to 5334 proteins in 932 species: Archae - 52; Bacteria - 3259; Metazoa - 131; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 1659 (source: NCBI BLink). | chr1:9163448-9165594 REVERSE |
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SynRCC307_1711
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Blast Hits |
[TAIR_pep] AT4G15470.1 | Symbols: | EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT1G03070.1); Has 4000 Blast hits to 3999 proteins in 955 species: Archae - 0; Bacteria - 1775; Metazoa - 750; Fungi - 92; Plants - 143; Viruses - 77; Other Eukaryotes - 1163 (source: NCBI BLink). | chr4:8843661-8845505 FORWARD |
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SynRCC307_1769
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Blast Hits |
[TAIR_pep] AT4G39380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TKI1 (TSL-kinase interacting protein 1); DNA binding / transcription factor (TAIR:AT2G36960.2); Has 39 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:18309628-18311874 REVERSE |
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SynRCC307_1806
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Blast Hits |
[TAIR_pep] AT5G65180.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 3523 Blast hits to 3241 proteins in 333 species: Archae - 25; Bacteria - 251; Metazoa - 1575; Fungi - 421; Plants - 142; Viruses - 17; Other Eukaryotes - 1092 (source: NCBI BLink). | chr5:26045625-26047806 FORWARD |
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SynRCC307_1946
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Blast Hits |
[TAIR_pep] AT5G50110.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose inhibited division protein (InterPro:IPR003682); Has 3963 Blast hits to 3963 proteins in 1297 species: Archae - 0; Bacteria - 2754; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 1189 (source: NCBI BLink). | chr5:20373515-20376068 FORWARD |
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SynRCC307_1958
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Blast Hits |
[TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE |
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SynRCC307_1959
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Blast Hits |
[TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE |
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SynRCC307_1971
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Blast Hits |
[TAIR_pep] AT4G28740.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LPA1 (LOW PSII ACCUMULATION1); binding (TAIR:AT1G02910.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:14201051-14202542 FORWARD |
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SynRCC307_1973
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Blast Hits |
[TAIR_pep] AT1G19290.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 31003 Blast hits to 6161 proteins in 194 species: Archae - 6; Bacteria - 22; Metazoa - 935; Fungi - 736; Plants - 27904; Viruses - 0; Other Eukaryotes - 1400 (source: NCBI BLink). | chr1:6666249-6668963 FORWARD |
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SynRCC307_2022
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Blast Hits |
[TAIR_pep] AT1G47330.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT2G14520.1); Has 6970 Blast hits to 6717 proteins in 1361 species: Archae - 64; Bacteria - 4382; Metazoa - 390; Fungi - 183; Plants - 125; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink). | chr1:17351149-17353739 FORWARD |
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SynRCC307_2057
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Blast Hits |
[TAIR_pep] AT1G09980.2 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: ZW18 (TAIR:AT1G58350.2); Has 342 Blast hits to 275 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | chr1:3256541-3260866 REVERSE |
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SynRCC307_2063
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Blast Hits |
[TAIR_pep] AT5G24740.1 | Symbols: | INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2); Has 1782 Blast hits to 981 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1018; Fungi - 290; Plants - 104; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink). | chr5:8470073-8489703 REVERSE |
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SynRCC307_2161
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Blast Hits |
[TAIR_pep] AT4G32140.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: membrane protein (TAIR:AT3G07080.1); Has 1078 Blast hits to 1078 proteins in 273 species: Archae - 20; Bacteria - 294; Metazoa - 244; Fungi - 147; Plants - 41; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink). | chr4:15523037-15525195 REVERSE |
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SynRCC307_2180
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Blast Hits |
[TAIR_pep] AT1G68660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). | chr1:25778058-25779083 REVERSE |
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SynRCC307_2208
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Blast Hits |
[TAIR_pep] AT4G32915.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species: Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). | chr4:15885549-15886628 FORWARD |
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SynRCC307_2215
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Blast Hits |
[TAIR_pep] AT5G63520.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FIST domain, N-terminal (InterPro:IPR013702); Has 96 Blast hits to 96 proteins in 46 species: Archae - 0; Bacteria - 72; Metazoa - 6; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:25426300-25429093 REVERSE |
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SynRCC307_2275
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Blast Hits |
[TAIR_pep] AT3G52155.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); Has 1050 Blast hits to 1050 proteins in 239 species: Archae - 0; Bacteria - 476; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink). | chr3:19343740-19344722 FORWARD |
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SynRCC307_2341
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Blast Hits |
[TAIR_pep] AT5G04050.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: intron maturase, type II family protein (TAIR:AT1G74350.1). | chr5:1096092-1098512 FORWARD |
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SynRCC307_2343
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Blast Hits |
[TAIR_pep] AT1G13330.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 2425 Blast hits to 2142 proteins in 283 species: Archae - 50; Bacteria - 240; Metazoa - 929; Fungi - 179; Plants - 47; Viruses - 23; Other Eukaryotes - 957 (source: NCBI BLink). | chr1:4568008-4569410 FORWARD |
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SynRCC307_2414
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Blast Hits |
[TAIR_pep] AT1G03260.1 | Symbols: | LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins in 730 species: Archae - 8; Bacteria - 1831; Metazoa - 239; Fungi - 87; Plants - 162; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink). | chr1:795678-798102 REVERSE |
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SynRCC307_2447
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Blast Hits |
[TAIR_pep] AT1G19360.1 | Symbols: | LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RRA2 (REDUCED RESIDUAL ARABINOSE 2) (TAIR:AT1G75110.1); Has 165 Blast hits to 162 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:6690672-6692211 REVERSE |
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SynRCC307_2523
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Blast Hits |
[TAIR_pep] AT1G63810.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 268 Blast hits to 263 proteins in 124 species: Archae - 3; Bacteria - 0; Metazoa - 116; Fungi - 89; Plants - 17; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | chr1:23669690-23675542 REVERSE |