|
SynRCC307_0243
|
InterPro |
IPR019656 Hypothetical chloroplast protein Ycf34; HMMPfam:PF10718 Ycf34 |
|
SynRCC307_2396
|
InterPro |
IPR020594 Ribosomal protein L9, bacteria/chloroplast; HMMTigr:TIGR00158 L9 |
|
SynRCC307_1880
|
InterPro |
IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast; HMMPfam:PF00430 ATP-synt_B |
|
SynRCC307_1881
|
InterPro |
IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast; HMMPfam:PF00430 ATP-synt_B |
|
SynRCC307_1882
|
InterPro |
IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast; HMMTigr:TIGR01260 ATP_synt_c: ATP synthase F0, C subunit |
|
SynRCC307_0652
|
Blast Hits |
[nr] ref|ZP_01085835.1| chloroplast membrane-associated 30 kD protein-like [Synechococcus sp. WH 5701] gi|87282527|gb|EAQ74486.1| chloroplast membrane-associated 30 kD protein-like [Synechococcus sp. WH 5701] |
|
SynRCC307_1819
|
Blast Hits |
[nr] ref|NP_895240.1| chloroplast outer envelope membrane protein [Prochlorococcus marinus str. MIT 9313] gi|33635263|emb|CAE21588.1| chloroplast outer envelope membrane protein homolog [Prochlorococcus marinus str. MIT 9313] |
| Blast Hits |
[sprot] OEP80_ARATH (sp|Q9C5J8) Outer envelope protein of 80 kDa, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1 |
|
SynRCC307_0028
|
Blast Hits |
[sprot] G3PA_CHOCR (sp|P34919) Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1 |
|
SynRCC307_0054
|
Blast Hits |
[sprot] SQD1_SPIOL (sp|Q84KI6) UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1 |
|
SynRCC307_0204
|
Blast Hits |
[sprot] SQD1_SPIOL (sp|Q84KI6) UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1 |
|
SynRCC307_0219
|
Blast Hits |
[sprot] AB13I_ARATH (sp|Q9AT00) Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1 |
|
SynRCC307_0220
|
Blast Hits |
[sprot] TGD2_ARATH (sp|Q9LTR2) Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1 |
|
SynRCC307_0241
|
Blast Hits |
[sprot] ROC3_ARATH (sp|Q04836) 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1 |
|
SynRCC307_0257
|
Blast Hits |
[sprot] AB10I_ARATH (sp|Q8H1R4) ABC transporter I family member 10, chloroplastic OS=Arabidopsis thaliana GN=ABCI10 PE=1 SV=1 |
|
SynRCC307_0315
|
Blast Hits |
[sprot] HEM2_ARATH (sp|Q9SFH9) Delta-aminolevulinic acid dehydratase, chloroplastic OS=Arabidopsis thaliana GN=HEMB PE=1 SV=1 |
|
SynRCC307_0322
|
Blast Hits |
[sprot] HEM3_EUGGR (sp|P13446) Porphobilinogen deaminase, chloroplastic OS=Euglena gracilis PE=1 SV=1 |
|
SynRCC307_0389
|
Blast Hits |
[sprot] DHNA_ARATH (sp|Q8GXR9) Probable NADH dehydrogenase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2 |
|
SynRCC307_0491
|
Blast Hits |
[sprot] MEX1_ARATH (sp|Q9LF50) Maltose excess protein 1, chloroplastic OS=Arabidopsis thaliana GN=MEX1 PE=1 SV=2 |
|
SynRCC307_0501
|
Blast Hits |
[sprot] Y2446_ARATH (sp|Q8H124) Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1 |
|
SynRCC307_0504
|
Blast Hits |
[sprot] IF3C_EUGGR (sp|P36177) Translation initiation factor IF-3, chloroplastic OS=Euglena gracilis PE=1 SV=1 |
|
SynRCC307_0548
|
Blast Hits |
[sprot] NIFU2_ARATH (sp|Q93W20) NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1 |
|
SynRCC307_0577
|
Blast Hits |
[sprot] CHLG_ARATH (sp|Q38833) Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1 |
|
SynRCC307_0609
|
Blast Hits |
[sprot] TL225_ARATH (sp|Q8H1Q1) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1 |
|
SynRCC307_0751
|
Blast Hits |
[sprot] GGPPS_HEVBR (sp|Q94ID7) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 |
|
SynRCC307_0802
|
Blast Hits |
[sprot] PPL1_ARATH (sp|P82538) PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1 |
|
SynRCC307_0865
|
Blast Hits |
[sprot] CCD8_ARATH (sp|Q8VY26) Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=2 SV=1 |
|
SynRCC307_1011
|
Blast Hits |
[TAIR_pep] AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035 FORWARD |
| Blast Hits |
[sprot] Y1934_ARATH (sp|Q9SA52) Uncharacterized protein At1g09340, chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1 SV=1 |
|
SynRCC307_1046
|
Blast Hits |
[sprot] CRTSO_SOLLC (sp|Q8S4R4) Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=2 SV=1 |
|
SynRCC307_1102
|
Blast Hits |
[sprot] RK2_SPIMX (sp|O98452) 50S ribosomal protein L2, chloroplastic OS=Spirogyra maxima GN=rpl2 PE=3 SV=1 |
|
SynRCC307_1167
|
Blast Hits |
[sprot] LIPC_SOLTU (sp|P80471) Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2 |
|
SynRCC307_1173
|
Blast Hits |
[sprot] SSY1_WHEAT (sp|Q43654) Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2 |
|
SynRCC307_1232
|
Blast Hits |
[sprot] U603_ARATH (sp|Q9ZVL6) UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1 |
|
SynRCC307_1245
|
Blast Hits |
[sprot] TL225_ARATH (sp|Q8H1Q1) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1 |
|
SynRCC307_1249
|
Blast Hits |
[sprot] LOXC2_ORYSJ (sp|Q84YK8) Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1 |
|
SynRCC307_1317
|
Blast Hits |
[TAIR_pep] AT2G44920.2 | Symbols: | thylakoid lumenal 15 kDa protein, chloroplast | chr2:18524419-18526502 FORWARD |
| Blast Hits |
[sprot] TL15A_ARATH (sp|O22160) Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2 |
|
SynRCC307_1342
|
Blast Hits |
[sprot] PERQ_SEDLI (sp|Q9MB35) Peroxiredoxin Q, chloroplastic (Fragment) OS=Sedum lineare GN=PRXQ PE=1 SV=1 |
|
SynRCC307_1424
|
Blast Hits |
[sprot] TL15B_ARATH (sp|Q9LVV5) Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2 |
|
SynRCC307_1448
|
Blast Hits |
[sprot] AB11I_ARATH (sp|Q8LEF6) ABC transporter I family member 11, chloroplastic OS=Arabidopsis thaliana GN=ABCI11 PE=2 SV=1 |
|
SynRCC307_1500
|
Blast Hits |
[sprot] CB5_ARATH (sp|Q9XF89) Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1 |
|
SynRCC307_1525
|
Blast Hits |
[sprot] PSBS_TOBAC (sp|Q9SMB4) Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1 |
|
SynRCC307_1542
|
Blast Hits |
[sprot] CRTSO_SOLLC (sp|Q8S4R4) Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=2 SV=1 |
|
SynRCC307_1642
|
Blast Hits |
[sprot] FTSH9_ARATH (sp|Q9FIM2) Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1 |
|
SynRCC307_1892
|
Blast Hits |
[sprot] CCDA1_ORYSJ (sp|Q2RAR6) Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1 |
|
SynRCC307_1923
|
Blast Hits |
[sprot] ISE2_ARATH (sp|B9DFG3) DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2 |
|
SynRCC307_1981
|
Blast Hits |
[sprot] PSBS_TOBAC (sp|Q9SMB4) Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1 |
|
SynRCC307_2019
|
Blast Hits |
[sprot] FTRC_SOYBN (sp|O49856) Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1 |
|
SynRCC307_2074
|
Blast Hits |
[sprot] Y1669_ARATH (sp|Q94A68) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1 |
|
SynRCC307_2104
|
Blast Hits |
[sprot] TMP14_ARATH (sp|Q8LCA1) Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2 |
|
SynRCC307_2106
|
Blast Hits |
[sprot] CRTSO_SOLLC (sp|Q8S4R4) Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=2 SV=1 |
|
SynRCC307_2173
|
Blast Hits |
[sprot] GTOMC_ARATH (sp|Q9ZSK1) Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=G-TMT PE=2 SV=2 |
|
SynRCC307_2222
|
Blast Hits |
[TAIR_pep] ATCG01010.1 | Symbols: NDHF | Chloroplast encoded NADH dehydrogenase unit. | chrC:110398-112638 REVERSE |
| Blast Hits |
[sprot] NU5C_MANES (sp|B1NWJ6) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta GN=ndhF PE=3 SV=1 |
|
SynRCC307_2224
|
Blast Hits |
[sprot] TR164_ORYSJ (sp|Q7Y0D4) Thioredoxin-like protein HCF164, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0767500 PE=2 SV=1 |
|
SynRCC307_2393
|
Blast Hits |
[sprot] ADS3_ARATH (sp|Q949X0) Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2 |
|
SynRCC307_2395
|
Blast Hits |
[sprot] ADS3_ARATH (sp|Q949X0) Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2 |
|
SynRCC307_2505
|
Blast Hits |
[sprot] PHYK1_SOYBN (sp|Q2N2K1) Probable phytol kinase 1, chloroplastic OS=Glycine max PE=2 SV=1 |
|
SynRCC307_2530
|
Blast Hits |
[sprot] CLH1_CITSI (sp|Q9MV14) Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1 |
|
SynRCC307_2137
|
Blast Hits |
[TAIR_pep] AT5G14320.1 | Symbols: | 30S ribosomal protein S13, chloroplast (CS13) | chr5:4617839-4618772 REVERSE |
| Blast Hits |
[pln_est] dbj|EC116182|EC116182 CIE00004734 Chlamydomonas incerta Regular library 2 Chlamydomonas incerta cDNA similar to 30S ribosomal protein S13; chloroplast precursor, mRNA sequence. |
|
SynRCC307_2166
|
Blast Hits |
[TAIR_pep] AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localized IscA-like protein); structural molecule | chr1:3460160-3461340 REVERSE |
| Blast Hits |
[pln_est] dbj|ES323869|ES323869 EoEST2140 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-2282 5' similar to Iron-sulfur assembly protein IscA, chloroplast precursor, mRNA sequence. |
|
SynRCC307_2167
|
Blast Hits |
[TAIR_pep] ATCG00905.1 | Symbols: RPS12C, RPS12 | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | chrC:97999-98793 REVERSE |
| Blast Hits |
[pln_est] dbj|EC732058|EC732058 MVE00004878 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to 30S ribosomal protein S12, M.v. chloroplast genome, mRNA sequence. |
|
SynRCC307_2338
|
Blast Hits |
[pln_est] dbj|EC732110|EC732110 MVE00004101 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to Photosystem II P680 chlorophyll A apoprotein, M.v. chloroplast genome, mRNA sequence. |
|
SynRCC307_0018
|
Blast Hits |
[TAIR_pep] AT2G26610.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G33530.1); Has 123 Blast hits to 101 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr2:11318771-11324174 FORWARD |
|
SynRCC307_0032
|
Blast Hits |
[TAIR_pep] AT5G16390.1 | Symbols: CAC1, CAC1A, BCCP, BCCP1 | CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding | chr5:5361098-5363020 REVERSE |
|
SynRCC307_0059
|
Blast Hits |
[TAIR_pep] ATCG00660.1 | Symbols: RPL20 | encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex | chrC:68512-68865 REVERSE |
|
SynRCC307_0109
|
Blast Hits |
[TAIR_pep] AT5G49910.1 | Symbols: CPHSC70-2EAT SHOCK PROTEIN 70-2, HSC70-7 | CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding | chr5:20303470-20306295 FORWARD |
|
SynRCC307_0161
|
Blast Hits |
[TAIR_pep] AT2G37400.1 | Symbols: | chloroplast lumen common family protein | chr2:15696365-15697366 REVERSE |
|
SynRCC307_0213
|
Blast Hits |
[TAIR_pep] ATCG00440.1 | Symbols: NDHC | Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex | chrC:50001-50363 REVERSE |
|
SynRCC307_0233
|
Blast Hits |
[TAIR_pep] ATCG01010.1 | Symbols: NDHF | Chloroplast encoded NADH dehydrogenase unit. | chrC:110398-112638 REVERSE |
|
SynRCC307_0274
|
Blast Hits |
[TAIR_pep] AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localized IscA-like protein); structural molecule | chr1:3460160-3461340 REVERSE |
|
SynRCC307_0276
|
Blast Hits |
[TAIR_pep] AT1G02475.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01883.1); Has 350 Blast hits to 350 proteins in 105 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). | chr1:514110-515331 REVERSE |
|
SynRCC307_0302
|
Blast Hits |
[TAIR_pep] AT4G35760.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 447 Blast hits to 447 proteins in 86 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). | chr4:16942733-16944622 REVERSE |
|
SynRCC307_0317
|
Blast Hits |
[TAIR_pep] AT4G35760.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 447 Blast hits to 447 proteins in 86 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). | chr4:16942733-16944622 REVERSE |
|
SynRCC307_0321
|
Blast Hits |
[TAIR_pep] AT5G65840.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37240.1); Has 167 Blast hits to 165 proteins in 51 species: Archae - 0; Bacteria - 28; Metazoa - 51; Fungi - 13; Plants - 59; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr5:26344097-26346057 REVERSE |
|
SynRCC307_0432
|
Blast Hits |
[TAIR_pep] AT4G00893.1 | Symbols: | LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12370.1); Has 133 Blast hits to 128 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:379971-381396 REVERSE |
|
SynRCC307_0446
|
Blast Hits |
[TAIR_pep] ATCG00730.1 | Symbols: PETD | A chloroplast gene encoding subunit IV of the cytochrome b6/f complex | chrC:76481-77672 FORWARD |
|
SynRCC307_0545
|
Blast Hits |
[TAIR_pep] ATCG00330.1 | Symbols: RPS14 | 30S chloroplast ribosomal protein S14 | chrC:36938-37240 REVERSE |
|
SynRCC307_0621
|
Blast Hits |
[TAIR_pep] ATCG00380.1 | Symbols: RPS4 | Chloroplast encoded ribosomal protein S4 | chrC:45223-45828 REVERSE |
|
SynRCC307_0623
|
Blast Hits |
[TAIR_pep] AT4G08280.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin 2 (InterPro:IPR008554), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 214 Blast hits to 214 proteins in 65 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | chr4:5230345-5231196 FORWARD |
|
SynRCC307_0625
|
Blast Hits |
[TAIR_pep] AT1G08490.1 | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase | chr1:2685980-2688547 REVERSE |
|
SynRCC307_0681
|
Blast Hits |
[TAIR_pep] AT1G24360.1 | Symbols: | 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase | chr1:8640820-8643283 FORWARD |
|
SynRCC307_0703
|
Blast Hits |
[TAIR_pep] ATCG00540.1 | Symbols: PETA | Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2. | chrC:61657-62619 FORWARD |
|
SynRCC307_0724
|
Blast Hits |
[TAIR_pep] AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator | chr4:13382456-13383571 REVERSE |
|
SynRCC307_0730
|
Blast Hits |
[TAIR_pep] AT5G06930.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3144 Blast hits to 1363 proteins in 247 species: Archae - 2; Bacteria - 721; Metazoa - 835; Fungi - 297; Plants - 80; Viruses - 10; Other Eukaryotes - 1199 (source: NCBI BLink). | chr5:2145139-2147849 FORWARD |
|
SynRCC307_0761
|
Blast Hits |
[TAIR_pep] AT4G01650.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink). | chr4:704578-705866 REVERSE |
|
SynRCC307_0768
|
Blast Hits |
[TAIR_pep] AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding | chr5:1060265-1063257 REVERSE |
|
SynRCC307_0799
|
Blast Hits |
[TAIR_pep] AT5G10620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SPOUT methyltransferase, predicted (InterPro:IPR003742); Has 3142 Blast hits to 3142 proteins in 1101 species: Archae - 27; Bacteria - 2338; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). | chr5:3355466-3356615 REVERSE |
|
SynRCC307_0827
|
Blast Hits |
[TAIR_pep] ATCG01010.1 | Symbols: NDHF | Chloroplast encoded NADH dehydrogenase unit. | chrC:110398-112638 REVERSE |
|
SynRCC307_0860
|
Blast Hits |
[TAIR_pep] AT3G63190.1 | Symbols: RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) | chr3:23342861-23344640 REVERSE |
|
SynRCC307_0887
|
Blast Hits |
[TAIR_pep] AT3G26580.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026); Has 2147 Blast hits to 1154 proteins in 168 species: Archae - 2; Bacteria - 99; Metazoa - 1301; Fungi - 180; Plants - 105; Viruses - 57; Other Eukaryotes - 403 (source: NCBI BLink). | chr3:9758933-9760349 FORWARD |
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SynRCC307_0975
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Blast Hits |
[TAIR_pep] ATCG00380.1 | Symbols: RPS4 | Chloroplast encoded ribosomal protein S4 | chrC:45223-45828 REVERSE |
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SynRCC307_0982
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Blast Hits |
[TAIR_pep] AT3G12930.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 2517 Blast hits to 2517 proteins in 833 species: Archae - 0; Bacteria - 1551; Metazoa - 22; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink). | chr3:4128465-4129616 FORWARD |
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SynRCC307_0997
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Blast Hits |
[TAIR_pep] AT1G80560.1 | Symbols: | 3-isopropylmalate dehydrogenase, chloroplast, putative | chr1:30287833-30290126 FORWARD |
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SynRCC307_1070
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Blast Hits |
[TAIR_pep] AT2G26610.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G33530.1); Has 123 Blast hits to 101 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr2:11318771-11324174 FORWARD |
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SynRCC307_1101
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Blast Hits |
[TAIR_pep] AT5G20300.2 | Symbols: | chloroplast outer membrane protein, putative | chr5:6853544-6856332 REVERSE |
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SynRCC307_1125
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Blast Hits |
[TAIR_pep] AT3G20330.1 | Symbols: | aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) | chr3:7090354-7091904 REVERSE |
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SynRCC307_1224
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Blast Hits |
[TAIR_pep] ATCG00640.1 | Symbols: RPL33 | encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of the ribosomal complex | chrC:67488-67688 FORWARD |
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SynRCC307_1225
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Blast Hits |
[TAIR_pep] ATCG00650.1 | Symbols: RPS18 | chloroplast-encoded ribosomal protein S18 | chrC:67917-68222 FORWARD |
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SynRCC307_1274
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Blast Hits |
[TAIR_pep] ATCG00160.1 | Symbols: RPS2 | Chloroplast ribosomal protein S2 | chrC:15013-15723 REVERSE |
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SynRCC307_1303
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Blast Hits |
[TAIR_pep] AT4G24750.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G08920.1); Has 222 Blast hits to 222 proteins in 59 species: Archae - 8; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr4:12758422-12760749 REVERSE |
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SynRCC307_1309
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Blast Hits |
[TAIR_pep] AT5G63830.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 339 Blast hits to 334 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 84; Plants - 29; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | chr5:25543585-25544802 REVERSE |
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SynRCC307_1323
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Blast Hits |
[TAIR_pep] ATCG01120.1 | Symbols: RPS15 | encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex | chrC:123296-123562 REVERSE |
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SynRCC307_1360
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Blast Hits |
[TAIR_pep] AT4G24280.1 | Symbols: cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding | chr4:12590094-12593437 FORWARD |
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SynRCC307_1383
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Blast Hits |
[TAIR_pep] AT2G33450.1 | Symbols: | 50S ribosomal protein L28, chloroplast (CL28) | chr2:14173620-14174380 FORWARD |
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SynRCC307_1488
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Blast Hits |
[TAIR_pep] ATCG01020.1 | Symbols: RPL32 | encodes a chloroplast ribosomal protein L32, a constituent of the large subunit of the ribosomal complex | chrC:113449-113607 FORWARD |
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SynRCC307_1530
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Blast Hits |
[TAIR_pep] AT2G23160.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16450.1); Has 750 Blast hits to 732 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9862470-9863393 FORWARD |
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SynRCC307_1548
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Blast Hits |
[TAIR_pep] AT4G10300.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04300.1); Has 356 Blast hits to 356 proteins in 93 species: Archae - 0; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr4:6384564-6385946 FORWARD |
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SynRCC307_1564
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Blast Hits |
[TAIR_pep] AT4G22980.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT5G51920.1); Has 294 Blast hits to 268 proteins in 91 species: Archae - 4; Bacteria - 15; Metazoa - 79; Fungi - 66; Plants - 107; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | chr4:12043974-12045653 REVERSE |
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SynRCC307_1684
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Blast Hits |
[TAIR_pep] AT4G11175.1 | Symbols: | translation initiation factor IF-1, chloroplast, putative | chr4:6818162-6818806 FORWARD |
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SynRCC307_1696
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Blast Hits |
[TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD |
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SynRCC307_1707
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Blast Hits |
[TAIR_pep] AT5G42480.1 | Symbols: ARC6 | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding | chr5:16985295-16988332 FORWARD |
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SynRCC307_1708
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Blast Hits |
[TAIR_pep] AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding | chr5:1060265-1063257 REVERSE |
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SynRCC307_1739
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Blast Hits |
[TAIR_pep] AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21); copper uptake transmembrane transporter/ iron ion transmembrane transporter/ protein homodimerization | chr2:6642512-6644011 REVERSE |
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SynRCC307_1827
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Blast Hits |
[TAIR_pep] AT1G35680.1 | Symbols: | 50S ribosomal protein L21, chloroplast / CL21 (RPL21) | chr1:13208777-13210246 FORWARD |
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SynRCC307_1853
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Blast Hits |
[TAIR_pep] AT4G24280.1 | Symbols: cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding | chr4:12590094-12593437 FORWARD |
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SynRCC307_1861
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Blast Hits |
[TAIR_pep] ATCG00480.1 | Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE |
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SynRCC307_1878
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Blast Hits |
[TAIR_pep] ATCG00120.1 | Symbols: ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. | chrC:9938-11461 REVERSE |
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SynRCC307_1958
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Blast Hits |
[TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE |
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SynRCC307_1959
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Blast Hits |
[TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE |
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SynRCC307_1961
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Blast Hits |
[TAIR_pep] AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20, putative | chr3:5116216-5117412 FORWARD |
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SynRCC307_1971
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Blast Hits |
[TAIR_pep] AT4G28740.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LPA1 (LOW PSII ACCUMULATION1); binding (TAIR:AT1G02910.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:14201051-14202542 FORWARD |
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SynRCC307_2015
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Blast Hits |
[TAIR_pep] AT1G08490.1 | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase | chr1:2685980-2688547 REVERSE |
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SynRCC307_2115
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Blast Hits |
[TAIR_pep] AT5G58260.1 | Symbols: | Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. | chr5:23561075-23561929 REVERSE |
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SynRCC307_2118
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Blast Hits |
[TAIR_pep] ATCG01300.1 | Symbols: RPL23.2 | One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex | chrC:152506-152787 FORWARD |
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SynRCC307_2119
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Blast Hits |
[TAIR_pep] ATCG01310.1 | Symbols: RPL2.2 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | chrC:152806-154312 FORWARD |
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SynRCC307_2121
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Blast Hits |
[TAIR_pep] ATCG00810.1 | Symbols: RPL22 | encodes a chloroplast ribosomal protein L22, a constituent of the large subunit of the ribosomal complex | chrC:83467-83949 REVERSE |
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SynRCC307_2122
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Blast Hits |
[TAIR_pep] ATCG00800.1 | Symbols: | encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex | chrC:82826-83482 REVERSE |
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SynRCC307_2123
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Blast Hits |
[TAIR_pep] ATCG00790.1 | Symbols: RPL16 | chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit | chrC:81189-82652 REVERSE |
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SynRCC307_2126
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Blast Hits |
[TAIR_pep] ATCG00780.1 | Symbols: RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex | chrC:80696-81064 REVERSE |
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SynRCC307_2127
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Blast Hits |
[TAIR_pep] AT5G54600.1 | Symbols: | 50S ribosomal protein L24, chloroplast (CL24) | chr5:22183046-22184403 FORWARD |
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SynRCC307_2129
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Blast Hits |
[TAIR_pep] ATCG00770.1 | Symbols: RPS8 | chloroplast 30S ribosomal protein S8 | chrC:80068-80472 REVERSE |
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SynRCC307_2138
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Blast Hits |
[TAIR_pep] ATCG00750.1 | Symbols: RPS11 | 30S chloroplast ribosomal protein S11 | chrC:78960-79376 REVERSE |
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SynRCC307_2158
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Blast Hits |
[TAIR_pep] ATCG00350.1 | Symbols: PSAA | Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome. | chrC:39605-41857 REVERSE |
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SynRCC307_2168
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Blast Hits |
[TAIR_pep] ATCG00900.1 | Symbols: RPS7.1, RPS7 | encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal complex | chrC:97478-97945 REVERSE |
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SynRCC307_2171
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Blast Hits |
[TAIR_pep] AT3G13120.1 | Symbols: | 30S ribosomal protein S10, chloroplast, putative | chr3:4220310-4221526 REVERSE |
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SynRCC307_2204
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Blast Hits |
[TAIR_pep] AT3G20330.1 | Symbols: | aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) | chr3:7090354-7091904 REVERSE |
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SynRCC307_2208
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Blast Hits |
[TAIR_pep] AT4G32915.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species: Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). | chr4:15885549-15886628 FORWARD |
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SynRCC307_2253
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Blast Hits |
[TAIR_pep] AT1G60600.2 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase | chr1:22324807-22326759 REVERSE |
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SynRCC307_2275
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Blast Hits |
[TAIR_pep] AT3G52155.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); Has 1050 Blast hits to 1050 proteins in 239 species: Archae - 0; Bacteria - 476; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink). | chr3:19343740-19344722 FORWARD |
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SynRCC307_2278
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Blast Hits |
[TAIR_pep] ATCG01090.1 | Symbols: NDHI | Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex | chrC:119244-119762 REVERSE |
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SynRCC307_2403
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Blast Hits |
[TAIR_pep] AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding | chr5:1060265-1063257 REVERSE |
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SynRCC307_2517
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Blast Hits |
[TAIR_pep] AT5G49910.1 | Symbols: CPHSC70-2EAT SHOCK PROTEIN 70-2, HSC70-7 | CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding | chr5:20303470-20306295 FORWARD |