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Full-text search result: 101 genes by "BACTERIAL" TXT SET

Synechococcus sp. RCC307 (101 genes ) TXT SET

SynRCC307_0018 InterPro IPR003004 Bacterial general secretion pathway protein F; FPrintScan:PR00812 BCTERIALGSPF
SynRCC307_0067 InterPro IPR008880 Trigger factor, C-terminal, bacterial; HMMPfam:PF05698 Trigger_C
InterPro IPR008880 Trigger factor, C-terminal, bacterial; superfamily:SSF109998 Trigger_fac_C_bac
InterPro IPR008881 Trigger factor, ribosome-binding, bacterial; HMMPfam:PF05697 Trigger_N
InterPro IPR008881 Trigger factor, ribosome-binding, bacterial; superfamily:SSF102735 Trigger_fac_ribosome-bd_bac
SynRCC307_0068 InterPro IPR005986 Aspartate-semialdehyde dehydrogenase, bacterial; HMMTigr:TIGR01296 asd_B
SynRCC307_0103 InterPro IPR005760 A/G-specific adenine glycosylase MutY, bacterial form; HMMTigr:TIGR01084 mutY
SynRCC307_0112 InterPro IPR006059 Bacterial extracellular solute-binding, family 1; HMMPfam:PF01547 SBP_bac_1
SynRCC307_0130 InterPro IPR005478 Transketolase, bacterial-like; HMMPanther:PTHR11624:SF1 BacTransketolase
InterPro IPR005478 Transketolase, bacterial-like; HMMTigr:TIGR00232 tktlase_bact
SynRCC307_0137 InterPro IPR011907 Ribonuclease III, bacterial; HMMTigr:TIGR02191 RNaseIII
SynRCC307_0173 InterPro IPR003362 Bacterial sugar transferase; HMMPfam:PF02397 Bac_transf
SynRCC307_0196 InterPro IPR001451 Bacterial transferase hexapeptide repeat; HMMPfam:PF00132 Hexapep
Blast Hits [TAIR_pep] AT4G21220.1 | Symbols: | bacterial transferase hexapeptide repeat-containing protein | chr4:11316978-11319067 REVERSE
SynRCC307_0293 InterPro IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal; HMMPfam:PF01872 RibD_C
SynRCC307_0307 InterPro IPR017673 Putative FeS-containing Cyanobacterial-specific oxidoreductase; HMMTigr:TIGR03279 cyano_FeS_chp
SynRCC307_0481 InterPro IPR000119 Histone-like bacterial DNA-binding protein; FPrintScan:PR01727 DNABINDINGHU
InterPro IPR000119 Histone-like bacterial DNA-binding protein; Gene3D:G3DSA:4.10.520.10 Hist_DNA_bd_bac
InterPro IPR000119 Histone-like bacterial DNA-binding protein; HMMPfam:PF00216 Bac_DNA_binding
InterPro IPR000119 Histone-like bacterial DNA-binding protein; HMMSmart:SM00411 BHL
SynRCC307_0543 InterPro IPR015848 Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; HMMPfam:PF03726 PNPase
InterPro IPR015848 Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; superfamily:SSF46915 3_ExoRNase
SynRCC307_0574 InterPro IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; HMMPfam:PF01189 Nol1_Nop2_Fmu
InterPro IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site; PatternScan:PS01153 NOL1_NOP2_SUN
SynRCC307_0592 InterPro IPR003362 Bacterial sugar transferase; HMMPfam:PF02397 Bac_transf
SynRCC307_0621 InterPro IPR005709 Ribosomal protein S4, bacterial-type; HMMTigr:TIGR01017 rpsD_bact
SynRCC307_0660 InterPro IPR005733 DNA topoisomerase I, bacterial-type; HMMTigr:TIGR01051 topA_bact
SynRCC307_0671 InterPro IPR014241 Cytochrome c oxidase, subunit I bacterial type; HMMTigr:TIGR02891 CtaD_CoxA
SynRCC307_0719 InterPro IPR010802 Protein of unknown function DUF1400, cynaobacterial; HMMPfam:PF07176 DUF1400
SynRCC307_0721 InterPro IPR000914 Bacterial extracellular solute-binding protein, family 5; HMMPfam:PF00496 SBP_bac_5
SynRCC307_0746 InterPro IPR005671 Bacterial 2-isopropylmalate synthase; HMMTigr:TIGR00973 leuA_bact
SynRCC307_0818 InterPro IPR020808 Bacterial microcompartments protein, conserved site; PatternScan:PS01139 BACT_MICROCOMP
SynRCC307_0860 InterPro IPR015998 Ribosome recycling factor, bacterial-like; HMMPanther:PTHR20982:SF3 RRF
SynRCC307_0876 InterPro IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial; HMMTigr:TIGR00409 proS_fam_II
SynRCC307_0892 InterPro IPR003995 RTX cytolytic toxin, protein A, core, bacterial; FPrintScan:PR01488 RTXTOXINA
SynRCC307_0902 InterPro IPR001919 Cellulose-binding domain, family II, bacterial type; HMMPfam:PF00553 CBM_2
InterPro IPR001919 Cellulose-binding domain, family II, bacterial type; ProfileScan:PS51173 CBM2
SynRCC307_0971 InterPro IPR011770 Dihydrodipicolinate reductase, bacterial/plant; HMMPanther:PTHR20836 DapB_bac/pln
InterPro IPR011770 Dihydrodipicolinate reductase, bacterial/plant; HMMTigr:TIGR00036 dapB
SynRCC307_0994 InterPro IPR014032 Peptidase A24A, prepilin type IV, bacterial; FPrintScan:PR00864 PREPILNPTASE
SynRCC307_0998 InterPro IPR001451 Bacterial transferase hexapeptide repeat; HMMPfam:PF00132 Hexapep
Blast Hits [TAIR_pep] AT4G21220.1 | Symbols: | bacterial transferase hexapeptide repeat-containing protein | chr4:11316978-11319067 REVERSE
SynRCC307_1055 InterPro IPR010323 Protein of unknown function DUF924, bacterial; HMMPfam:PF06041 DUF924
SynRCC307_1188 InterPro IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; FPrintScan:PR00985 TRNASYNTHLEU
InterPro IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; HMMPanther:PTHR11946:SF7 Leu_tRNAsyn_1a
InterPro IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; HMMTigr:TIGR00396 leuS_bact
SynRCC307_1223 InterPro IPR004532 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HMMTigr:TIGR00472 pheT_bact
SynRCC307_1322 InterPro IPR000085 Bacterial DNA recombination protein RuvA; HMMTigr:TIGR00084 ruvA
InterPro IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial; HMMPfam:PF01330 RuvA_N
SynRCC307_1323 InterPro IPR005290 Ribosomal protein S15, bacterial-type; HMMPanther:PTHR23321:SF10 Ribosom_S15_bac
InterPro IPR005290 Ribosomal protein S15, bacterial-type; HMMTigr:TIGR00952 S15_bact
SynRCC307_1325 InterPro IPR011708 Bacterial DNA polymerase III, alpha subunit; HMMPfam:PF07733 DNA_pol3_alpha
SynRCC307_1362 InterPro IPR006059 Bacterial extracellular solute-binding, family 1; HMMPfam:PF01547 SBP_bac_1
SynRCC307_1374 InterPro IPR006059 Bacterial extracellular solute-binding, family 1; HMMPfam:PF01547 SBP_bac_1
SynRCC307_1434 InterPro IPR002016 Haem peroxidase, plant/fungal/bacterial; FPrintScan:PR00458 PEROXIDASE
InterPro IPR002016 Haem peroxidase, plant/fungal/bacterial; HMMPfam:PF00141 peroxidase
InterPro IPR002016 Haem peroxidase, plant/fungal/bacterial; ProfileScan:PS50873 PEROXIDASE_4
SynRCC307_1462 InterPro IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HMMPfam:PF04551 GcpE
InterPro IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HMMTigr:TIGR00612 ispG_gcpE
InterPro IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial; HMMPIR:PIRSF004640 IspG
SynRCC307_1480 InterPro IPR011805 Ribonuclease R, bacterial; HMMPanther:PTHR23355:SF9 RNase_II_R_bac
SynRCC307_1485 InterPro IPR004610 Bacterial RecJ exonuclease; HMMTigr:TIGR00644 recJ
SynRCC307_1633 InterPro IPR006059 Bacterial extracellular solute-binding, family 1; HMMPfam:PF01547 SBP_bac_1
SynRCC307_1634 InterPro IPR006059 Bacterial extracellular solute-binding, family 1; HMMPfam:PF01547 SBP_bac_1
SynRCC307_1666 InterPro IPR004527 Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; HMMTigr:TIGR00464 gltX_bact
SynRCC307_1751 InterPro IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal; HMMPfam:PF01872 RibD_C
SynRCC307_2031 InterPro IPR006059 Bacterial extracellular solute-binding, family 1; HMMPfam:PF01547 SBP_bac_1
SynRCC307_2070 InterPro IPR012997 Rare lipoprotein A, bacterial; HMMTigr:TIGR00413 rlpA
SynRCC307_2094 InterPro IPR003826 S-adenosylmethionine decarboxylase, bacterial/archaeal; HMMPfam:PF02675 AdoMet_dc
SynRCC307_2116 InterPro IPR019927 Ribosomal protein L3, bacterial/organelle-type; HMMTigr:TIGR03625 L3_bact
SynRCC307_2117 InterPro IPR013005 Ribosomal protein L4/L1e, bacterial-type; HMMPanther:PTHR10746 Ribos_L4_L1E_bac
SynRCC307_2119 InterPro IPR005880 Ribosomal protein L2, bacterial-type; HMMPanther:PTHR13691:SF5 Ribosom_L2_bac
InterPro IPR005880 Ribosomal protein L2, bacterial-type; HMMTigr:TIGR01171 rplB_bact
SynRCC307_2120 InterPro IPR005732 Ribosomal protein S19, bacterial-type; HMMTigr:TIGR01050 rpsS_bact
SynRCC307_2121 InterPro IPR005727 Ribosomal protein L22, bacterial-type; HMMPanther:PTHR13501 Ribosom_L22_bac
InterPro IPR005727 Ribosomal protein L22, bacterial-type; HMMTigr:TIGR01044 rplV_bact
SynRCC307_2122 InterPro IPR005704 Ribosomal protein S3, bacterial; HMMTigr:TIGR01009 rpsC_bact
SynRCC307_2125 InterPro IPR019984 Ribosomal protein S17, bacterial-type; HMMTigr:TIGR03635 S17_bact
SynRCC307_2126 InterPro IPR005745 Ribosomal protein L14, bacterial-type; HMMPanther:PTHR11761:SF3 Ribosom_L14_bac
InterPro IPR005745 Ribosomal protein L14, bacterial-type; HMMTigr:TIGR01067 rplN_bact
SynRCC307_2130 InterPro IPR019906 Ribosomal protein L6, bacterial-type; FPrintScan:PR00059 RIBOSOMALL6
InterPro IPR019906 Ribosomal protein L6, bacterial-type; HMMTigr:TIGR03654 L6_bact
SynRCC307_2131 InterPro IPR004389 Ribosomal protein L18, bacterial; HMMTigr:TIGR00060 L18_bact
SynRCC307_2132 InterPro IPR005712 Ribosomal protein S5, bacterial-type; HMMTigr:TIGR01021 rpsE_bact
SynRCC307_2133 InterPro IPR005749 Ribosomal protein L15, bacterial-type; HMMPanther:PTHR12934 Ribosom_L15_bac
InterPro IPR005749 Ribosomal protein L15, bacterial-type; HMMTigr:TIGR01071 rplO_bact
SynRCC307_2137 InterPro IPR019980 Ribosomal protein S13, bacterial-type; HMMTigr:TIGR03631 Bact_S13
SynRCC307_2138 InterPro IPR019981 Ribosomal protein S11, bacterial-type; HMMTigr:TIGR03632 Bact_S11
SynRCC307_2142 InterPro IPR005823 Ribosomal protein L13, bacterial-type; HMMPanther:PTHR11545:SF2 Ribosom_L13_bac
InterPro IPR005823 Ribosomal protein L13, bacterial-type; HMMTigr:TIGR01066 rplM_bact
SynRCC307_2167 InterPro IPR005679 Ribosomal protein S12, bacterial-type; FPrintScan:PR01034 RIBOSOMALS12
InterPro IPR005679 Ribosomal protein S12, bacterial-type; HMMPanther:PTHR11652:SF1 Ribosom_S12_bac
InterPro IPR005679 Ribosomal protein S12, bacterial-type; HMMTigr:TIGR00981 rpsL_bact
SynRCC307_2168 InterPro IPR005717 Ribosomal protein S7, bacterial-type; HMMTigr:TIGR01029 rpsG_bact
SynRCC307_2170 InterPro IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle; HMMPanther:PTHR23115:SF31 Transl_elong_EFTu/EF1A_bac/org
InterPro IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle; HMMTigr:TIGR00485 EF-Tu
SynRCC307_2233 InterPro IPR001919 Cellulose-binding domain, family II, bacterial type; HMMPfam:PF00553 CBM_2
InterPro IPR001919 Cellulose-binding domain, family II, bacterial type; HMMSmart:SM00637 CBD_II
InterPro IPR001919 Cellulose-binding domain, family II, bacterial type; ProfileScan:PS51173 CBM2
SynRCC307_2339 InterPro IPR003369 Bacterial sec-independent translocation protein mttA/Hcf106; HMMPfam:PF02416 MttA_Hcf106
SynRCC307_2357 InterPro IPR005878 Ribosomal protein L1, bacterial-type; HMMTigr:TIGR01169 rplA_bact
SynRCC307_2358 InterPro IPR006519 Ribosomal protein L11, bacterial-type; HMMTigr:TIGR01632 L11_bact
SynRCC307_2404 InterPro IPR008557 Protein of unknown function DUF839, bacterial; HMMPfam:PF05787 DUF839
SynRCC307_2432 InterPro IPR011551 NTP pyrophosphohydrolase MazG, bacterial; HMMTigr:TIGR00444 mazG
SynRCC307_2438 InterPro IPR004524 Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; HMMTigr:TIGR00459 aspS_bact
InterPro IPR018153 Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal; HMMPanther:PTHR22594:SF5 AspS_bac
SynRCC307_2452 InterPro IPR001851 Bacterial inner-membrane translocator; HMMPfam:PF02653 BPD_transp_2
SynRCC307_2453 InterPro IPR001851 Bacterial inner-membrane translocator; HMMPfam:PF02653 BPD_transp_2
SynRCC307_2467 InterPro IPR013589 Bacterial transglutaminase-like, N-terminal; HMMPfam:PF08379 Bact_transglu_N
SynRCC307_2508 InterPro IPR004406 Aconitase B, bacterial; HMMPIR:PIRSF036687 AcnB
InterPro IPR004406 Aconitase B, bacterial; HMMTigr:TIGR00117 acnB
InterPro IPR015929 Aconitase B, N-terminal, bacterial; HMMPfam:PF06434 Aconitase_2_N
InterPro IPR015930 Aconitase B, iron-sulphur-binding, bacterial; HMMPanther:PTHR11670:SF3 Aconitase_2
InterPro IPR015933 Aconitase B, HEAT-like, bacterial; HMMPfam:PF11791 Aconitase_B_N
InterPro IPR015933 Aconitase B, HEAT-like, bacterial; superfamily:SSF74778 Aconitase_B_HEAT-like_bac
SynRCC307_2516 InterPro IPR006059 Bacterial extracellular solute-binding, family 1; HMMPfam:PF01547 SBP_bac_1
SynRCC307_2520 InterPro IPR020814 Ribosomal protein S6, bacterial-like; HMMPfam:PF01250 Ribosomal_S6
SynRCC307_2534 InterPro IPR010802 Protein of unknown function DUF1400, cynaobacterial; HMMPfam:PF07176 DUF1400
SynRCC307_1805 InterPro IPR002307 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; FPrintScan:PR01040 TRNASYNTHTYR
InterPro IPR002307 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; HMMPanther:PTHR11766 Tyr_tRNA-synt_1b
InterPro IPR002307 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; HMMTigr:TIGR00234 tyrS
SynRCC307_1819 InterPro IPR000184 Bacterial surface antigen (D15); HMMPfam:PF01103 Bac_surface_Ag
SynRCC307_1831 InterPro IPR014780 Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HMMTigr:TIGR00431 TruB
InterPro IPR015240 Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type; HMMPfam:PF09157 TruB-C_2
SynRCC307_1880 InterPro IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast; HMMPfam:PF00430 ATP-synt_B
InterPro IPR005864 ATPase, F0 complex, subunit B, bacterial; HMMTigr:TIGR01144 ATP_synt_b
SynRCC307_1881 InterPro IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast; HMMPfam:PF00430 ATP-synt_B
SynRCC307_1882 InterPro IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast; HMMTigr:TIGR01260 ATP_synt_c: ATP synthase F0, C subunit
SynRCC307_1959 InterPro IPR010243 DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP:MF_01321 RPOB_MF_01321
InterPro IPR010243 DNA-directed RNA polymerase, beta subunit, bacterial-type; HMMTigr:TIGR02013 rpoB: DNA-directed RNA polymerase, beta subu
RNA_3 Gene product Bacterial ribonuclease P RNA component of ribozyme
SynRCC307_0042 Gene product Bacterial UmuD protein homolog (SOS-regulated protein)
SynRCC307_0043 Gene product Bacterial UmuC protein homolog (SOS-regulated protein)
SynRCC307_1890 Gene product Bacterial cell division membrane protein
SynRCC307_1946 Gene product Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division
SynRCC307_0226 Blast Hits [nr] ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916]
SynRCC307_0429 Blast Hits [nr] ref|ZP_05045840.1| bacterial regulatory protein, ArsR family [Cyanobium sp. PCC 7001] gi|197626590|gb|EDY39149.1| bacterial regulatory protein, ArsR family [Cyanobium sp. PCC 7001]
SynRCC307_1144 Blast Hits [nr] ref|YP_001224749.1| glycogen synthase [Synechococcus sp. WH 7803] gi|166225988|sp|A5GKI7.1|GLGA_SYNPW RecName: Full=Glycogen synthase; AltName: Full=Starch [bacterial glycogen] synthase gi|147847901|emb|CAK23452.1| Glycosyltransferase of family GT5; probable glycogen synthase [Synechococcus sp. WH 7803]
SynRCC307_2021 Blast Hits [nr] ref|ZP_01084216.1| Bacterial regulatory proteins, AsnC family protein [Synechococcus sp. WH 5701] gi|87284343|gb|EAQ76296.1| Bacterial regulatory proteins, AsnC family protein [Synechococcus sp. WH 5701]
SynRCC307_2397 Blast Hits [nr] ref|ZP_01084900.1| DnaB helicase:RecA bacterial DNA recombination protein [Synechococcus sp. WH 5701] gi|87283634|gb|EAQ75589.1| DnaB helicase:RecA bacterial DNA recombination protein [Synechococcus sp. WH 5701]
SynRCC307_1777 Blast Hits [TAIR_pep] AT1G69390.1 | Symbols: ATMINE1 | ATMINE1 (Arabidopsis homologue of bacterial MinE 1); protein binding | chr1:26084721-26086284 FORWARD
SynRCC307_1816 Blast Hits [TAIR_pep] AT4G29540.2 | Symbols: | bacterial transferase hexapeptide repeat-containing protein | chr4:14497775-14499765 FORWARD
SynRCC307_1896 Blast Hits [TAIR_pep] AT3G25470.1 | Symbols: | bacterial hemolysin-related | chr3:9233039-9235022 FORWARD
SynRCC307_2069 Blast Hits [TAIR_pep] AT5G48840.1 | Symbols: PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization | chr5:19803823-19805041 REVERSE

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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