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cyanobase » Synechococcus sp. RCC307 » genes » search

Full-text search result: 181 genes by "156" TXT SET

Synechococcus sp. RCC307 (181 genes ) TXT SET

SynRCC307_0004 InterPro IPR000836 Phosphoribosyltransferase; HMMPfam:PF00156 Pribosyltran
SynRCC307_0011 InterPro NULL NULL; HMMPanther:PTHR11564 PTHR11564
InterPro NULL NULL; HMMPanther:PTHR11564:SF6 PTHR11564:SF6
SynRCC307_0019 InterPro NULL NULL; HMMPanther:PTHR11564 PTHR11564
InterPro NULL NULL; HMMPanther:PTHR11564:SF3 PTHR11564:SF3
SynRCC307_0022 InterPro IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ; HMMPanther:PTHR11821 Hsp40/DnaJ_Rel
SynRCC307_0026 InterPro IPR006094 FAD linked oxidase, N-terminal; HMMPfam:PF01565 FAD_binding_4
SynRCC307_0069 InterPro NULL NULL; superfamily:SSF51569 SSF51569
Blast Hits [pln_est] dbj|DV963978|DV963978 GC01961 Gracilaria changii cDNA library Gracilaria changii cDNA clone 156-A07-T3, mRNA sequence.
SynRCC307_0073 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_0146 InterPro IPR006094 FAD linked oxidase, N-terminal; HMMPfam:PF01565 FAD_binding_4
SynRCC307_0156 Gene product Glycosyltransferase of family GT4
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
GO term Biological Process: biosynthetic process (GO:0009058)
InterPro IPR001296 Glycosyl transferase, group 1; HMMPfam:PF00534 Glycos_transf_1
InterPro NULL NULL; HMMPanther:PTHR12526 PTHR12526
InterPro NULL NULL; superfamily:SSF53756 SSF53756
Blast Hits [TAIR_pep] AT5G37180.1 | Symbols: SUS5, ATSUS5 | SUS5; UDP-glycosyltransferase/ sucrose synthase | chr5:14718238-14722913 FORWARD
Blast Hits [nr] ref|ZP_01084846.1| hypothetical protein WH5701_01765 [Synechococcus sp. WH 5701] gi|87283580|gb|EAQ75535.1| hypothetical protein WH5701_01765 [Synechococcus sp. WH 5701]
Blast Hits [pln_est] gb|FG599091|FG599091 PFR_T3_74R_G08_11SEP2003_052 Opium poppy root cDNA library Papaver somniferum cDNA, mRNA sequence.
Blast Hits [sprot] SUSY_PHAAU (sp|Q01390) Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1
SynRCC307_0268 InterPro IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ; HMMPanther:PTHR11821 Hsp40/DnaJ_Rel
SynRCC307_0285 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_0307 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_0315 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_0316 InterPro IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ; HMMPanther:PTHR11821 Hsp40/DnaJ_Rel
SynRCC307_0375 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_0444 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_0446 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
InterPro IPR005870 Cytochrome b6/f complex, subunit IV; HMMTigr:TIGR01156 cytb6/f_IV
SynRCC307_0458 InterPro IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase; HMMPfam:PF01569 PAP2
SynRCC307_0546 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_0547 InterPro IPR018156 Seryl-tRNA synthetase, class IIa, C-terminal; FPrintScan:PR00981 TRNASYNTHSER
InterPro IPR018156 Seryl-tRNA synthetase, class IIa, C-terminal; HMMPanther:PTHR11778 tRNA-synt_ser
SynRCC307_0608 InterPro IPR006094 FAD linked oxidase, N-terminal; HMMPfam:PF01565 FAD_binding_4
SynRCC307_0615 InterPro IPR016156 FAD/NAD-linked reductase, dimerisation; superfamily:SSF55424 FAD/NAD-linked_reductase_dimer
SynRCC307_0626 InterPro IPR016156 FAD/NAD-linked reductase, dimerisation; superfamily:SSF55424 FAD/NAD-linked_reductase_dimer
SynRCC307_0741 InterPro IPR002708 Protein of unknown function DUF39; BlastProDom:PD011569 DUF39
SynRCC307_0746 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_0771 GO term Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156)
InterPro IPR000836 Phosphoribosyltransferase; HMMPfam:PF00156 Pribosyltran
SynRCC307_0832 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_0857 InterPro IPR003724 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; HMMPIR:PIRSF015617 Adensltrnsf_CobA
SynRCC307_0863 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_0927 InterPro IPR006156 Dihydroneopterin aldolase subgroup; HMMPanther:PTHR20941:SF3 FolB
InterPro IPR006156 Dihydroneopterin aldolase subgroup; HMMTigr:TIGR00525 folB
SynRCC307_0941 InterPro IPR001567 Peptidase M3A/M3B, thimet/oligopeptidase F; HMMPfam:PF01432 Peptidase_M3
SynRCC307_0966 InterPro IPR000836 Phosphoribosyltransferase; HMMPfam:PF00156 Pribosyltran
SynRCC307_1156 Gene product Possible nitrilase
Function General function prediction only: General function prediction only
GO term Biological Process: nitrogen compound metabolic process (GO:0006807)
GO term Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810)
InterPro IPR001110 Uncharacterised protein family UPF0012, conserved site; PatternScan:PS01227 UPF0012
InterPro IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Gene3D:G3DSA:3.60.110.10 Ntlse/CNhydtse
InterPro IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; HMMPfam:PF00795 CN_hydrolase
InterPro IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; ProfileScan:PS50263 CN_HYDROLASE
InterPro IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; superfamily:SSF56317 Ntlse/CNhydtse
InterPro NULL NULL; HMMPanther:PTHR23088 PTHR23088
Blast Hits [TAIR_pep] AT4G08790.1 | Symbols: | nitrilase, putative | chr4:5608489-5611118 REVERSE
Blast Hits [nr] ref|ZP_01086143.1| Possible nitrilase [Synechococcus sp. WH 5701] gi|87282003|gb|EAQ73965.1| Possible nitrilase [Synechococcus sp. WH 5701]
Blast Hits [pln_est] dbj|EX371549|EX371549 GQ03222.B7_I16 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03222_I16 5', mRNA sequence.
Blast Hits [sprot] Y601_SYNY3 (sp|P55175) UPF0012 hydrolase sll0601 OS=Synechocystis sp. (strain PCC 6803) GN=sll0601 PE=3 SV=1
SynRCC307_1179 InterPro IPR002524 Cation efflux protein; HMMPanther:PTHR11562 Cation_efflux
SynRCC307_1202 InterPro IPR016156 FAD/NAD-linked reductase, dimerisation; superfamily:SSF55424 FAD/NAD-linked_reductase_dimer
SynRCC307_1222 InterPro IPR001566 23S rRNA methyltransferase/RumA; HMMTigr:TIGR00479 rumA
SynRCC307_1350 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_1359 InterPro IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ; HMMPanther:PTHR11821 Hsp40/DnaJ_Rel
SynRCC307_1388 InterPro NULL NULL; superfamily:SSF81563 SSF81563
SynRCC307_1461 InterPro IPR000836 Phosphoribosyltransferase; HMMPfam:PF00156 Pribosyltran
SynRCC307_1463 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_1485 InterPro IPR003156 Phosphoesterase, DHHA1; HMMPfam:PF02272 DHHA1
SynRCC307_1493 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_1511 InterPro IPR015683 Glutamate receptor-related; HMMPanther:PTHR18966 Glut_Rec_Related
SynRCC307_1560 Gene product Superfamily II DNA/RNA helicase
Function Replication, recombination and repair: Replication, recombination and repair
GO term Molecular Function: ATP binding (GO:0005524)
GO term Molecular Function: ATP-dependent helicase activity (GO:0008026)
GO term Molecular Function: helicase activity (GO:0004386)
GO term Molecular Function: nucleic acid binding (GO:0003676)
InterPro IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site; PatternScan:PS00039 DEAD_ATP_HELICASE
InterPro IPR001650 DNA/RNA helicase, C-terminal; HMMPfam:PF00271 Helicase_C
InterPro IPR001650 DNA/RNA helicase, C-terminal; HMMSmart:SM00490 HELICc
InterPro IPR001650 DNA/RNA helicase, C-terminal; ProfileScan:PS51194 HELICASE_CTER
InterPro IPR005580 DbpA, RNA-binding; HMMPfam:PF03880 DbpA
InterPro IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal; HMMPfam:PF00270 DEAD
InterPro IPR014001 DEAD-like helicase, N-terminal; HMMSmart:SM00487 DEXDc
InterPro IPR014014 RNA helicase, DEAD-box type, Q motif; ProfileScan:PS51195 Q_MOTIF
InterPro IPR014021 Helicase, superfamily 1/2, ATP-binding domain; ProfileScan:PS51192 HELICASE_ATP_BIND_1
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.300 G3DSA:3.40.50.300
InterPro NULL NULL; HMMPanther:PTHR10967 PTHR10967
InterPro NULL NULL; HMMPanther:PTHR10967:SF51 PTHR10967:SF51
InterPro NULL NULL; superfamily:SSF52540 SSF52540
Blast Hits [TAIR_pep] AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | chr3:7892641-7895145 FORWARD
Blast Hits [nr] ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701] gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Blast Hits [pln_est] dbj|DR026880|DR026880 Osmo00905 F. cylindrus osmotic stress library Fragilariopsis cylindrus cDNA clone FcylESTa45e07.s1, mRNA sequence.
Blast Hits [sprot] DEAD_BUCAI (sp|P57453) Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1
SynRCC307_1562 Gene product hypothetical protein
Function Function unknown: Function unknown
InterPro IPR014956 Putative ParB-like nuclease; HMMPfam:PF08857 ParBc_2
InterPro IPR016932 Uncharacterised conserved protein UCP029669; HMMPIR:PIRSF029669 UCP029669
Blast Hits [TAIR_pep] AT1G15520.1 | Symbols: PDR12, ATPDR12 | PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances | chr1:5331993-5338175 REVERSE
Blast Hits [nr] ref|NP_897628.1| hypothetical protein SYNW1535 [Synechococcus sp. WH 8102] gi|33639044|emb|CAE08050.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Blast Hits [pln_est] dbj|EG721438|EG721438 GTE00013395 Guillardia theta non-normalised Guillardia theta cDNA, mRNA sequence.
Blast Hits [sprot] KDSB_DELAS (sp|A9BWI2) 3-deoxy-manno-octulosonate cytidylyltransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=kdsB PE=3 SV=1
SynRCC307_1563 Gene product Possible membrane-bound transcriptional regulator
Function Transcription: Transcription
InterPro IPR004474 Cell envelope-related transcriptional attenuator; HMMPfam:PF03816 LytR_cpsA_psr
InterPro IPR004474 Cell envelope-related transcriptional attenuator; HMMTigr:TIGR00350 lytR_cpsA_psr
Blast Hits [TAIR_pep] AT1G49250.1 | Symbols: | ATP dependent DNA ligase family protein | chr1:18220533-18224256 FORWARD
Blast Hits [nr] ref|ZP_05045407.1| transcriptional regulator [Cyanobium sp. PCC 7001] gi|197626157|gb|EDY38716.1| transcriptional regulator [Cyanobium sp. PCC 7001]
Blast Hits [pln_est] dbj|EG989214|EG989214 GLE079_G06_018 Cyamopsis tetragonoloba (L.) Taub seeds at early developmental stage Cyamopsis tetragonoloba cDNA, mRNA sequence.
Blast Hits [sprot] LYAT_BACLD (sp|Q65E87) Transcriptional regulator lytR OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=lytR PE=3 SV=1
SynRCC307_1564 Gene product light-independent protochlorophyllide reductase subunit N
Gene symbol chlN
Function Energy production and conversion: Energy production and conversion
GO term Biological Process: chlorophyll biosynthetic process (GO:0015995)
GO term Biological Process: oxidation reduction (GO:0055114)
GO term Biological Process: photosynthesis, dark reaction (GO:0019685)
GO term Molecular Function: oxidoreductase activity (GO:0016491)
GO term Molecular Function: oxidoreductase activity, acting on iron-sulfur proteins as donors (GO:0016730)
InterPro IPR000510 Nitrogenase/oxidoreductase, component 1; HMMPfam:PF00148 Oxidored_nitro
InterPro IPR005970 Light-independent protochlorophyllide reductase, N subunit; HMMPIR:PIRSF000162 P_chlorophyll_rd
InterPro IPR005970 Light-independent protochlorophyllide reductase, N subunit; HMMTigr:TIGR01279 DPOR_bchN
InterPro NULL NULL; superfamily:SSF53807 SSF53807
Blast Hits [TAIR_pep] AT4G22980.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT5G51920.1); Has 294 Blast hits to 268 proteins in 91 species: Archae - 4; Bacteria - 15; Metazoa - 79; Fungi - 66; Plants - 107; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | chr4:12043974-12045653 REVERSE
Blast Hits [nr] ref|ZP_01085321.1| light-independent protochlorophyllide reductase subunit N [Synechococcus sp. WH 5701] gi|87282848|gb|EAQ74805.1| light-independent protochlorophyllide reductase subunit N [Synechococcus sp. WH 5701]
Blast Hits [pln_est] dbj|EX928769|EX928769 ll17a01.g7 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence.
Blast Hits [sprot] CHLN_PROMM (sp|Q7V6E9) Light-independent protochlorophyllide reductase subunit N OS=Prochlorococcus marinus (strain MIT 9313) GN=chlN PE=3 SV=1
SynRCC307_1568 Gene product Predicted flavoprotein
Function General function prediction only: General function prediction only
InterPro IPR005025 NADPH-dependent FMN reductase; HMMPfam:PF03358 FMN_red
InterPro NULL NULL; superfamily:SSF52218 SSF52218
Blast Hits [TAIR_pep] AT3G27890.1 | Symbols: NQR | NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase | chr3:10350807-10351938 REVERSE
Blast Hits [nr] ref|ZP_01079321.1| possible reductase [Synechococcus sp. RS9917] gi|86169190|gb|EAQ70446.1| possible reductase [Synechococcus sp. RS9917]
Blast Hits [pln_est] gb|GT017707|GT017707 TransId-272145 CarCatLeEnri2 Coffea arabica cDNA clone CarCatLeEnri2_40-A04-PAL17d similar to NAD(P)H:quinone oxidoreductase (EC 1.6.5.2) (NAD(P)H:QR) - Solanum tuberosum (Potato), mRNA sequence.
Blast Hits [sprot] YIEF_SHIFL (sp|P0AGE8) Uncharacterized protein yieF OS=Shigella flexneri GN=yieF PE=3 SV=1
SynRCC307_1569 Gene product Putative Pirin-related protein
Function General function prediction only: General function prediction only
InterPro IPR003829 Pirin, N-terminal; HMMPfam:PF02678 Pirin
InterPro IPR011051 Cupin, RmlC-type; superfamily:SSF51182 RmlC_like_cupin
InterPro IPR012093 Pirin; HMMPIR:PIRSF006232 Pirin
InterPro IPR012093 Pirin; HMMPanther:PTHR13903 Pirin
InterPro IPR014710 RmlC-like jelly roll fold; Gene3D:G3DSA:2.60.120.10 RmlC-like_jellyroll
Blast Hits [TAIR_pep] AT2G43120.1 | Symbols: | pirin, putative | chr2:17927339-17928871 FORWARD
Blast Hits [nr] ref|YP_173104.1| hypothetical protein syc2394_d [Synechococcus elongatus PCC 6301] gi|56687362|dbj|BAD80584.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Blast Hits [pln_est] gb|CO212205|CO212205 WS00924.B21_F18 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00924_F18 3', mRNA sequence.
Blast Hits [sprot] Y1773_SYNY3 (sp|P73623) Pirin-like protein sll1773 OS=Synechocystis sp. (strain PCC 6803) GN=sll1773 PE=3 SV=1
SynRCC307_1565 Gene product light-independent protochlorophyllide reductase subunit B
Gene symbol chlB
Function Energy production and conversion: Energy production and conversion
GO term Biological Process: chlorophyll biosynthetic process (GO:0015995)
GO term Biological Process: oxidation reduction (GO:0055114)
GO term Biological Process: photosynthesis (GO:0015979)
GO term Biological Process: photosynthesis, dark reaction (GO:0019685)
GO term Biological Process: pigment biosynthetic process (GO:0046148)
GO term Molecular Function: oxidoreductase activity (GO:0016491)
GO term Molecular Function: oxidoreductase activity, acting on iron-sulfur proteins as donors (GO:0016730)
InterPro IPR000510 Nitrogenase/oxidoreductase, component 1; HMMPfam:PF00148 Oxidored_nitro
InterPro IPR005969 Light-independent protochlorophyllide reductase, B subunit; HAMAP:MF_00353 BCHB_MF_00353
InterPro IPR005969 Light-independent protochlorophyllide reductase, B subunit; HMMTigr:TIGR01278 DPOR_BchB: light-independent protochlorophy
InterPro IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal; HMMPfam:PF08369 PCP_red
InterPro IPR016209 Protochlorophyllide reductase, ChlB, light independent; HMMPIR:PIRSF000163 Protochlorophyllide reductase chain ChlB, light-independent
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.1980 no description
InterPro NULL NULL; Seg:seg seg
InterPro NULL NULL; superfamily:SSF53807 "Helical backbone" metal receptor
Blast Hits [TAIR_pep] AT4G03430.1 | Symbols: STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism | chr4:1517411-1520500 REVERSE
Blast Hits [nr] ref|ZP_01085322.1| light-independent protochlorophyllide reductase subunit B [Synechococcus sp. WH 5701] gi|87282849|gb|EAQ74806.1| light-independent protochlorophyllide reductase subunit B [Synechococcus sp. WH 5701]
Blast Hits [pln_est] dbj|DN255445|DN255445 Meso08030 Mesostigma vegetative library Mesostigma viride cDNA clone Meso2a15f12.t7, mRNA sequence.
Blast Hits [sprot] CHLB_SYNSC (sp|Q3ALL7) Light-independent protochlorophyllide reductase subunit B OS=Synechococcus sp. (strain CC9605) GN=chlB PE=3 SV=1
SynRCC307_1566 Gene product protochlorophyllide reductase iron-sulfur ATP-binding protein
Gene symbol chlL
Function Inorganic ion transport and metabolism: Inorganic ion transport and metabolism
GO term Biological Process: chlorophyll biosynthetic process (GO:0015995)
GO term Biological Process: oxidation reduction (GO:0055114)
GO term Biological Process: photosynthesis, dark reaction (GO:0019685)
GO term Biological Process: pigment biosynthetic process (GO:0046148)
GO term Molecular Function: ATP binding (GO:0005524)
GO term Molecular Function: oxidoreductase activity (GO:0016491)
GO term Molecular Function: oxidoreductase activity, acting on iron-sulfur proteins as donors (GO:0016730)
InterPro IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; FPrintScan:PR00091 NITROGNASEII
InterPro IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; HMMPIR:PIRSF000363 Nitrogenase iron protein
InterPro IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; HMMPfam:PF00142 Fer4_NifH
InterPro IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; PatternScan:PS00692 NIFH_FRXC_2
InterPro IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; PatternScan:PS00746 NIFH_FRXC_1
InterPro IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; ProfileScan:PS51026 NIFH_FRXC_3
InterPro IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein; HAMAP:MF_00355 BCHL_MF_00355
InterPro IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein; HMMTigr:TIGR01281 DPOR_bchL: light-independent protochlorophy
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.300 no description
InterPro NULL NULL; Seg:seg seg
InterPro NULL NULL; superfamily:SSF52540 P-loop containing nucleoside triphosphate hydrolases
Blast Hits [TAIR_pep] AT5G24020.1 | Symbols: MIND, ARC11, ATMIND1 | MIND; ATPase/ calcium-dependent ATPase/ protein binding / protein homodimerization | chr5:8116731-8117711 FORWARD
Blast Hits [nr] ref|ZP_01469482.1| Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein [Synechococcus sp. BL107] gi|116064737|gb|EAU70496.1| Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein [Synechococcus sp. BL107]
Blast Hits [pln_est] dbj|DN261105|DN261105 Meso04459 Mesostigma vegetative library Mesostigma viride cDNA clone Meso2b12a01.t7, mRNA sequence.
Blast Hits [sprot] CHLL_SYNSC (sp|Q3ALL9) Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein OS=Synechococcus sp. (strain CC9605) GN=chlL PE=3 SV=1
SynRCC307_1601 InterPro IPR021562 Protein of unknown function DUF3007; HMMPfam:PF11460 DUF3007
SynRCC307_1647 InterPro IPR006094 FAD linked oxidase, N-terminal; HMMPfam:PF01565 FAD_binding_4
SynRCC307_1664 InterPro IPR001857 Ribosomal protein L19; HMMPanther:PTHR15680 Ribosomal_L19
InterPro NULL NULL; HMMPanther:PTHR15680:SF2 PTHR15680:SF2
SynRCC307_1708 InterPro IPR004780 Signal recognition particle, SRP; HMMPanther:PTHR11564:SF7 SRP_sub
InterPro NULL NULL; HMMPanther:PTHR11564 PTHR11564
SynRCC307_1799 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_2020 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_2029 InterPro IPR000836 Phosphoribosyltransferase; HMMPfam:PF00156 Pribosyltran
SynRCC307_2143 InterPro IPR000754 Ribosomal protein S9; HMMPanther:PTHR21569 Ribosomal_S9
SynRCC307_2154 InterPro IPR003757 Photosystem I reaction centre, subunit XI PsaL; superfamily:SSF81568 PSI_PsaL
SynRCC307_2192 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_2302 InterPro IPR000836 Phosphoribosyltransferase; HMMPfam:PF00156 Pribosyltran
Blast Hits [nr] ref|YP_001224004.1| orotate phosphoribosyltransferase [Synechococcus sp. WH 7803] gi|147847156|emb|CAK22707.1| Orotate phosphoribosyltransferase [Synechococcus sp. WH 7803]
SynRCC307_2345 InterPro IPR003724 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; HMMPIR:PIRSF015617 Adensltrnsf_CobA
SynRCC307_2354 InterPro IPR002156 Ribonuclease H; HMMPfam:PF00075 RnaseH
InterPro IPR002156 Ribonuclease H; ProfileScan:PS50879 RNASE_H
SynRCC307_2377 InterPro IPR001564 Nucleoside diphosphate kinase, core; FPrintScan:PR01243 NUCDPKINASE
InterPro IPR001564 Nucleoside diphosphate kinase, core; Gene3D:G3DSA:3.30.70.141 NDK
InterPro IPR001564 Nucleoside diphosphate kinase, core; HMMPanther:PTHR11349 Nuc_diP_kinase_core
InterPro IPR001564 Nucleoside diphosphate kinase, core; HMMPfam:PF00334 NDK
InterPro IPR001564 Nucleoside diphosphate kinase, core; HMMSmart:SM00562 NDK
InterPro IPR001564 Nucleoside diphosphate kinase, core; superfamily:SSF54919 NDK
SynRCC307_2380 InterPro IPR003156 Phosphoesterase, DHHA1; HMMPfam:PF02272 DHHA1
SynRCC307_2434 InterPro IPR001045 Spermine synthase; HMMPfam:PF01564 Spermine_synth
SynRCC307_2489 InterPro IPR006657 Molydopterin dinucleotide-binding domain; HMMPfam:PF01568 Molydop_binding
SynRCC307_2507 InterPro NULL NULL; superfamily:SSF51569 SSF51569
SynRCC307_1803 InterPro IPR018089 Orotidine 5'-phosphate decarboxylase, active site; PatternScan:PS00156 OMPDECASE
SynRCC307_1856 InterPro IPR000836 Phosphoribosyltransferase; HMMPfam:PF00156 Pribosyltran
SynRCC307_1945 InterPro IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ; HMMPanther:PTHR11821 Hsp40/DnaJ_Rel
SynRCC307_1948 InterPro IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ; HMMPanther:PTHR11821 Hsp40/DnaJ_Rel
SynRCC307_1965 InterPro IPR001478 PDZ/DHR/GLGF; superfamily:SSF50156 PDZ
SynRCC307_1970 InterPro NULL NULL; superfamily:SSF52156 SSF52156
SynRCC307_1561 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [TAIR_pep] AT1G58250.1 | Symbols: SAB | SAB (SABRE) | chr1:21587317-21601373 REVERSE
Blast Hits [nr] ref|ZP_01124402.1| hypothetical protein WH7805_04356 [Synechococcus sp. WH 7805] gi|88786835|gb|EAR17993.1| hypothetical protein WH7805_04356 [Synechococcus sp. WH 7805]
Blast Hits [pln_est] dbj|EV095626|EV095626 0193627 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
Blast Hits [sprot] Y018_GEOKA (sp|Q5L3X5) UPF0133 protein GK0018 OS=Geobacillus kaustophilus GN=GK0018 PE=3 SV=1
SynRCC307_1567 Gene product hypothetical protein
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
Blast Hits [TAIR_pep] AT2G23010.1 | Symbols: SCPL9 | serine carboxypeptidase S10 family protein | chr2:9798843-9802485 FORWARD
Blast Hits [nr] ref|ZP_05045760.1| conserved hypothetical protein [Cyanobium sp. PCC 7001] gi|197626510|gb|EDY39069.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
Blast Hits [pln_est] dbj|DY956549|DY956549 CHPZ4108.b1_G20.ab1 CHP(XYZ) plains sunflower Helianthus petiolaris cDNA clone CHPZ4108, mRNA sequence.
Blast Hits [sprot] 3HAO_XANOR (sp|Q5H043) 3-hydroxyanthranilate 3,4-dioxygenase OS=Xanthomonas oryzae pv. oryzae GN=XOO2424 PE=3 SV=2
SynRCC307_2156 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [TAIR_pep] AT1G31010.1 | Symbols: OSB4 | OSB4 (organellar single-stranded DNA binding protein 4); single-stranded DNA binding | chr1:11054926-11056873 REVERSE
Blast Hits [sprot] HUTG_BACSU (sp|P42068) Formimidoylglutamase OS=Bacillus subtilis GN=hutG PE=1 SV=1
SynRCC307_0018 GO term Biological Process: protein secretion by the type II secretion system (GO:0015628)
GO term Cellular Component: type II protein secretion system complex (GO:0015627)
SynRCC307_0113 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0226 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0250 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0253 GO term Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism (GO:0015662)
SynRCC307_0256 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0259 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
SynRCC307_0563 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0566 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0779 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0901 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0959 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_0973 GO term Molecular Function: dihydropteroate synthase activity (GO:0004156)
SynRCC307_0985 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_1023 GO term Biological Process: magnesium ion transport (GO:0015693)
SynRCC307_1201 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_1209 GO term Molecular Function: dihydropteroate synthase activity (GO:0004156)
SynRCC307_1310 GO term Biological Process: protein secretion by the type II secretion system (GO:0015628)
GO term Cellular Component: type II protein secretion system complex (GO:0015627)
Blast Hits [TAIR_pep] AT1G72170.1 | Symbols: | unknown protein | chr1:27156403-27157516 FORWARD
SynRCC307_1311 GO term Biological Process: protein secretion by the type II secretion system (GO:0015628)
GO term Cellular Component: type II protein secretion system complex (GO:0015627)
SynRCC307_1433 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_1440 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
SynRCC307_1441 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
SynRCC307_1457 GO term Molecular Function: phosphonate transmembrane transporter activity (GO:0015604)
SynRCC307_1546 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_1695 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
SynRCC307_1696 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
SynRCC307_1744 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_2009 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
SynRCC307_2183 GO term Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156)
SynRCC307_2261 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_2412 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_2419 GO term Molecular Function: two-component response regulator activity (GO:0000156)
SynRCC307_2490 GO term Biological Process: inorganic anion transport (GO:0015698)
SynRCC307_0029 Blast Hits [nr] ref|ZP_01471566.1| putative thiamine monophosphate kinase [Synechococcus sp. RS9916] gi|116069609|gb|EAU75361.1| putative thiamine monophosphate kinase [Synechococcus sp. RS9916]
SynRCC307_0260 Blast Hits [nr] ref|NP_895807.1| dolichyl-phosphate-mannose-protein mannosyltransferase [Prochlorococcus marinus str. MIT 9313] gi|33641027|emb|CAE22156.1| Dolichyl-phosphate-mannose-protein mannosyltransferase [Prochlorococcus marinus str. MIT 9313]
SynRCC307_0317 Blast Hits [nr] ref|ZP_01084166.1| hypothetical protein WH5701_15606 [Synechococcus sp. WH 5701] gi|87284293|gb|EAQ76246.1| hypothetical protein WH5701_15606 [Synechococcus sp. WH 5701]
SynRCC307_0329 Blast Hits [nr] ref|NP_359658.1| hypothetical protein RC0021 [Rickettsia conorii str. Malish 7] gi|229586249|ref|YP_002844750.1| hypothetical protein RAF_ORF0021 [Rickettsia africae ESF-5] gi|15619055|gb|AAL02559.1| unknown [Rickettsia conorii str. Malish 7] gi|228021299|gb|ACP53007.1| Unknown [Rickettsia africae ESF-5]
SynRCC307_0340 Blast Hits [nr] ref|ZP_01084180.1| hypothetical protein WH5701_15676 [Synechococcus sp. WH 5701] gi|87284307|gb|EAQ76260.1| hypothetical protein WH5701_15676 [Synechococcus sp. WH 5701]
SynRCC307_0434 Blast Hits [nr] ref|YP_002482291.1| hypothetical protein Cyan7425_1560 [Cyanothece sp. PCC 7425] gi|219863591|gb|ACL43930.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
SynRCC307_0739 Blast Hits [nr] ref|ZP_01470361.1| inositol-5-monophosphate dehydrogenase [Synechococcus sp. RS9916] gi|116068404|gb|EAU74156.1| inositol-5-monophosphate dehydrogenase [Synechococcus sp. RS9916]
SynRCC307_0935 Blast Hits [nr] ref|YP_001370607.1| GCN5-related N-acetyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561280|gb|ABS14778.1| GCN5-related N-acetyltransferase [Ochrobactrum anthropi ATCC 49188]
SynRCC307_0988 Blast Hits [nr] ref|YP_001015611.1| GAF domain-containing protein [Prochlorococcus marinus str. NATL1A] gi|123961564|gb|ABM76347.1| FOG: GAF domain-containing protein [Prochlorococcus marinus str. NATL1A]
SynRCC307_1040 Blast Hits [nr] ref|YP_001011877.1| hypothetical protein P9515_15631 [Prochlorococcus marinus str. MIT 9515] gi|123201162|gb|ABM72770.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9515]
SynRCC307_1100 Blast Hits [nr] ref|XP_001563273.1| amastin [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060285|emb|CAM45696.1| amastin [Leishmania braziliensis]
SynRCC307_1375 Blast Hits [nr] ref|ZP_05046156.1| ABC transporter for possibly for trehalose/maltose, membrane component [Cyanobium sp. PCC 7001] gi|197626906|gb|EDY39465.1| ABC transporter for possibly for trehalose/maltose, membrane component [Cyanobium sp. PCC 7001]
SynRCC307_1496 Blast Hits [nr] ref|ZP_01084156.1| conserved hypothetical membrane protein [Synechococcus sp. WH 5701] gi|87284283|gb|EAQ76236.1| conserved hypothetical membrane protein [Synechococcus sp. WH 5701]
SynRCC307_1536 Blast Hits [nr] ref|ZP_02073488.1| hypothetical protein CLOL250_00228 [Clostridium sp. L2-50] gi|156865739|gb|EDO59170.1| hypothetical protein CLOL250_00228 [Clostridium sp. L2-50]
SynRCC307_1639 Blast Hits [nr] ref|XP_001643804.1| hypothetical protein Kpol_1044p4 [Vanderwaltozyma polyspora DSM 70294] gi|156114430|gb|EDO15946.1| hypothetical protein Kpol_1044p4 [Vanderwaltozyma polyspora DSM 70294]
SynRCC307_1892 Blast Hits [nr] ref|YP_001015678.1| putative c-type cytochrome biogenesis protein CcdA [Prochlorococcus marinus str. NATL1A] gi|123961631|gb|ABM76414.1| putative c-type cytochrome biogenesis protein CcdA [Prochlorococcus marinus str. NATL1A]
SynRCC307_1909 Blast Hits [nr] ref|YP_001413624.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156750|gb|ABS63967.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1]
SynRCC307_2114 Blast Hits [nr] ref|NP_898156.1| putative ldpA protein [Synechococcus sp. WH 8102] gi|33633375|emb|CAE08580.1| putative ldpA protein [Synechococcus sp. WH 8102]
SynRCC307_2136 Blast Hits [nr] ref|NP_898178.1| 50S ribosomal protein L36 [Synechococcus sp. WH 8102] gi|78185542|ref|YP_377976.1| 50S ribosomal protein L36 [Synechococcus sp. CC9902] gi|87300893|ref|ZP_01083735.1| Ribosomal protein L36 [Synechococcus sp. WH 5701] gi|116072180|ref|ZP_01469448.1| Ribosomal protein L36 [Synechococcus sp. BL107] gi|254430396|ref|ZP_05044099.1| ribosomal protein L36 [Cyanobium sp. PCC 7001] gi|59798842|sp|Q7U4I0.1|RL36_SYNPX RecName: Full=50S ribosomal protein L36 gi|123581061|sp|Q3AW73.1|RL36_SYNS9 RecName: Full=50S ribosomal protein L36 gi|33633397|emb|CAE08602.1| 50S ribosomal protein L36 [Synechococcus sp. WH 8102] gi|78169836|gb|ABB26933.1| LSU ribosomal protein L36P [Synechococcus sp. CC9902] gi|87284764|gb|EAQ76716.1| Ribosomal protein L36 [Synechococcus sp. WH 5701] gi|116065803|gb|EAU71561.1| Ribosomal protein L36 [Synechococcus sp. BL107] gi|197624849|gb|EDY37408.1| ribosomal protein L36 [Cyanobium sp. PCC 7001]
SynRCC307_2210 Blast Hits [nr] ref|YP_730881.1| hypothetical protein sync_1677 [Synechococcus sp. CC9311] gi|113882156|gb|ABI47114.1| conserved hypothetical protein [Synechococcus sp. CC9311]
SynRCC307_2335 Blast Hits [nr] ref|YP_378085.1| photosystem II reaction center I protein I [Synechococcus sp. CC9902] gi|78211812|ref|YP_380591.1| photosystem II reaction center I protein I [Synechococcus sp. CC9605] gi|87125095|ref|ZP_01080942.1| hypothetical protein RS9917_03798 [Synechococcus sp. RS9917] gi|88808014|ref|ZP_01123525.1| hypothetical protein WH7805_07626 [Synechococcus sp. WH 7805] gi|113952926|ref|YP_729541.1| photosystem II reaction center I protein I [Synechococcus sp. CC9311] gi|116075618|ref|ZP_01472877.1| hypothetical protein RS9916_39171 [Synechococcus sp. RS9916] gi|148238646|ref|YP_001224033.1| photosystem II reaction center I protein I [Synechococcus sp. WH 7803] gi|260435637|ref|ZP_05789607.1| conserved domain protein [Synechococcus sp. WH 8109] gi|123031898|sp|Q0IDD1.1|PSBI_SYNS3 RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|123578904|sp|Q3AMZ6.1|PSBI_SYNSC RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|123581031|sp|Q3AW25.1|PSBI_SYNS9 RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|156633582|sp|A5GIH1.1|PSBI_SYNPW RecName: Full=Photosystem II reaction center protein I; Short=PSII-I; AltName: Full=PSII 4.4 kDa protein gi|78169945|gb|ABB27042.1| photosystem II reaction center I protein (PsbI) [Synechococcus sp. CC9902] gi|78196271|gb|ABB34036.1| photosystem II reaction center I protein (PsbI) [Synechococcus sp. CC9605] gi|86167415|gb|EAQ68675.1| hypothetical protein RS9917_03798 [Synechococcus sp. RS9917] gi|88788053|gb|EAR19209.1| hypothetical protein WH7805_07626 [Synechococcus sp. WH 7805] gi|113880277|gb|ABI45235.1| photosystem II reaction center I protein [Synechococcus sp. CC9311] gi|116066933|gb|EAU72688.1| hypothetical protein RS9916_39171 [Synechococcus sp. RS9916] gi|147847185|emb|CAK22736.1| Photosystem II reaction center I protein [Synechococcus sp. WH 7803] gi|260413511|gb|EEX06807.1| conserved domain protein [Synechococcus sp. WH 8109]
SynRCC307_0230 Blast Hits [sprot] ENW1_PANTR (sp|P61563) ERV-W1 provirus ancestral Env polyprotein OS=Pan troglodytes GN=ERVWE1 PE=3 SV=1
SynRCC307_0334 Blast Hits [sprot] Y064_SYNY3 (sp|Q55156) Putative RNA methyltransferase slr0064 OS=Synechocystis sp. (strain PCC 6803) GN=slr0064 PE=3 SV=1
SynRCC307_1029 Blast Hits [sprot] L2CC_DROME (sp|P24156) Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2)37Cc PE=1 SV=2
SynRCC307_1066 Blast Hits [sprot] PLYB_ASPTN (sp|Q0CBV0) Probable pectate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=plyB PE=3 SV=1
SynRCC307_1483 Blast Hits [sprot] ALBU2_SALSA (sp|Q03156) Serum albumin 2 OS=Salmo salar GN=alb2 PE=2 SV=1
SynRCC307_1801 Blast Hits [sprot] YFIS_BACSU (sp|O31561) Uncharacterized MFS-type transporter yfiS OS=Bacillus subtilis GN=yfiS PE=3 SV=1
SynRCC307_2105 Blast Hits [sprot] Y1563_SYNY3 (sp|P74594) Uncharacterized protein slr1563 OS=Synechocystis sp. (strain PCC 6803) GN=slr1563 PE=3 SV=1
SynRCC307_0762 Blast Hits [pln_est] gb|FE491569|FE491569 CAOT5136.fwd CAOT Selaginella moellendorffii mixed tissues; whole juvenile plants with roots and reproductive stems with developing strobili Selaginella moellendorffii cDNA clone CAOT5136 5', mRNA sequence.
SynRCC307_1155 Blast Hits [pln_est] emb|AW934156|AW934156 EST359999 tomato fruit mature green, TAMU Solanum lycopersicum cDNA clone cLEF58C13 5', mRNA sequence.
SynRCC307_1815 Blast Hits [pln_est] gb|FC359156|FC359156 CAYY31659.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY31659 5', mRNA sequence.
SynRCC307_2041 Blast Hits [pln_est] dbj|EG729518|EG729518 GTE00015630 Guillardia theta non-normalised Guillardia theta cDNA, mRNA sequence.
SynRCC307_2060 Blast Hits [pln_est] dbj|EG729518|EG729518 GTE00015630 Guillardia theta non-normalised Guillardia theta cDNA, mRNA sequence.
SynRCC307_2313 Blast Hits [pln_est] gb|CT903156|CT903156 CT903156 Phaeodactylum tricornutum oval morphology (low salinity, 10% SW) Pt3(CCAP1052/1B) Phaeodactylum tricornutum cDNA 5', mRNA sequence.
SynRCC307_2346 Blast Hits [pln_est] emb|AM815645|AM815645 AM815645 seedling library, SL Nicotiana tabacum cDNA clone nt002047060, mRNA sequence.
SynRCC307_2365 Blast Hits [pln_est] gb|CV515675|CV515675 0048P0010Z_D11_SP6 Mimulus guttatus library 1 Mimulus guttatus cDNA clone 0048P0010Z_D11, mRNA sequence.
SynRCC307_0161 Blast Hits [TAIR_pep] AT2G37400.1 | Symbols: | chloroplast lumen common family protein | chr2:15696365-15697366 REVERSE
SynRCC307_0168 Blast Hits [TAIR_pep] AT2G41800.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41810.1); Has 156 Blast hits to 155 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17436671-17438005 REVERSE
SynRCC307_0231 Blast Hits [TAIR_pep] ATCG01050.1 | Symbols: NDHD | Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene. | chrC:115665-117185 REVERSE
SynRCC307_0292 Blast Hits [TAIR_pep] AT3G47250.3 | Symbols: | unknown protein | chr3:17400124-17401566 REVERSE
SynRCC307_0367 Blast Hits [TAIR_pep] AT5G18740.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18730.1); Has 191 Blast hits to 135 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:6250060-6251352 FORWARD
SynRCC307_0381 Blast Hits [TAIR_pep] AT4G21750.2 | Symbols: ATML1 | ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor | chr4:11556965-11560243 FORWARD
SynRCC307_0590 Blast Hits [TAIR_pep] AT4G32450.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:15661092-15662705 FORWARD
SynRCC307_0594 Blast Hits [TAIR_pep] AT3G58610.2 | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD
SynRCC307_0614 Blast Hits [TAIR_pep] AT4G38020.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:17861568-17863010 FORWARD
SynRCC307_0683 Blast Hits [TAIR_pep] AT2G37390.1 | Symbols: | heavy-metal-associated domain-containing protein | chr2:15694300-15695461 FORWARD
SynRCC307_0725 Blast Hits [TAIR_pep] AT3G55340.1 | Symbols: PHIP1 | PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1); RNA binding / mRNA binding | chr3:20515672-20517832 FORWARD
SynRCC307_0828 Blast Hits [TAIR_pep] ATCG01050.1 | Symbols: NDHD | Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene. | chrC:115665-117185 REVERSE
SynRCC307_0837 Blast Hits [TAIR_pep] AT5G39040.1 | Symbols: ATTAP2, TAP2 | ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter | chr5:15625660-15629621 FORWARD
SynRCC307_0942 Blast Hits [TAIR_pep] ATCG01050.1 | Symbols: NDHD | Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene. | chrC:115665-117185 REVERSE
SynRCC307_1067 Blast Hits [TAIR_pep] AT5G43130.1 | Symbols: TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor | chr5:17315608-17321144 REVERSE
SynRCC307_1113 Blast Hits [TAIR_pep] AT1G13220.2 | Symbols: LINC2 | LINC2 (LITTLE NUCLEI2) | chr1:4515699-4520071 FORWARD
SynRCC307_1217 Blast Hits [TAIR_pep] AT1G32160.1 | Symbols: | unknown protein | chr1:11568701-11570241 FORWARD
SynRCC307_1353 Blast Hits [TAIR_pep] AT2G19940.2 | Symbols: | N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization | chr2:8613168-8615649 FORWARD
SynRCC307_1466 Blast Hits [TAIR_pep] AT2G26200.1 | Symbols: | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT1G54650.1); Has 1504 Blast hits to 1429 proteins in 277 species: Archae - 33; Bacteria - 213; Metazoa - 664; Fungi - 202; Plants - 139; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink). | chr2:11152875-11156330 FORWARD
SynRCC307_1506 Blast Hits [TAIR_pep] AT2G26200.1 | Symbols: | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT1G54650.1); Has 1504 Blast hits to 1429 proteins in 277 species: Archae - 33; Bacteria - 213; Metazoa - 664; Fungi - 202; Plants - 139; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink). | chr2:11152875-11156330 FORWARD
SynRCC307_1521 Blast Hits [TAIR_pep] AT4G26380.1 | Symbols: | DC1 domain-containing protein | chr4:13338078-13341560 FORWARD
SynRCC307_1614 Blast Hits [TAIR_pep] AT3G12750.1 | Symbols: ZIP1 | ZIP1 (ZINC TRANSPORTER 1 PRECURSOR); zinc ion transmembrane transporter | chr3:4051950-4053156 REVERSE
SynRCC307_1772 Blast Hits [TAIR_pep] AT4G21560.3 | Symbols: VPS28-1 | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter | chr4:11469037-11469666 REVERSE
SynRCC307_1825 Blast Hits [TAIR_pep] AT5G05460.1 | Symbols: | hydrolase, acting on glycosyl bonds / mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase | chr5:1615615-1618771 FORWARD
SynRCC307_1861 Blast Hits [TAIR_pep] ATCG00480.1 | Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE
SynRCC307_2026 Blast Hits [TAIR_pep] AT5G39030.1 | Symbols: | protein kinase family protein | chr5:15620066-15622486 FORWARD
SynRCC307_2031 Blast Hits [TAIR_pep] AT2G15630.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:6814521-6816404 FORWARD
SynRCC307_2125 Blast Hits [TAIR_pep] AT1G49400.1 | Symbols: emb1129 | emb1129 (embryo defective 1129); structural constituent of ribosome | chr1:18283156-18283643 FORWARD
SynRCC307_2328 Blast Hits [TAIR_pep] AT4G32520.2 | Symbols: SHM3 | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding | chr4:15689642-15692334 REVERSE
SynRCC307_2404 Blast Hits [TAIR_pep] AT5G15680.1 | Symbols: | binding | chr5:5101188-5110793 REVERSE
SynRCC307_2452 Blast Hits [TAIR_pep] AT4G32400.1 | Symbols: SHS1, ATBT1 | SHS1 (SODIUM HYPERSENSITIVE 1); binding / nucleotide transmembrane transporter/ transporter | chr4:15638686-15640238 FORWARD
SynRCC307_2471 Blast Hits [TAIR_pep] AT2G03800.1 | Symbols: GEK1 | GEK1 (GEKO1); D-aminoacyl-tRNA deacylase | chr2:1156782-1158695 FORWARD
SynRCC307_2482 Blast Hits [TAIR_pep] AT2G15620.1 | Symbols: NIR1, NIR, ATHNIR | NIR1 (NITRITE REDUCTASE 1); ferredoxin-nitrate reductase/ nitrite reductase (NO-forming) | chr2:6810552-6812666 FORWARD

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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