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cyanobase » Synechococcus sp. RCC307 » genes » search

Full-text search result: 326 genes by "114" TXT SET

Synechococcus sp. RCC307 (326 genes ) TXT SET

SynRCC307_0013 InterPro IPR009049 Argininosuccinate lyase; HMMPanther:PTHR11444:SF3 argH
InterPro NULL NULL; HMMPanther:PTHR11444 PTHR11444
SynRCC307_0080 InterPro IPR002180 6,7-dimethyl-8-ribityllumazine synthase; HMMTigr:TIGR00114 lumazine-synth
SynRCC307_0114 Gene product lysyl-tRNA synthetase
Gene symbol lysS
Function Translation: Translation
GO term Biological Process: lysyl-tRNA aminoacylation (GO:0006430)
GO term Biological Process: tRNA aminoacylation for protein translation (GO:0006418)
GO term Biological Process: translation (GO:0006412)
GO term Cellular Component: cytoplasm (GO:0005737)
GO term Molecular Function: ATP binding (GO:0005524)
GO term Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812)
GO term Molecular Function: lysine-tRNA ligase activity (GO:0004824)
GO term Molecular Function: nucleic acid binding (GO:0003676)
GO term Molecular Function: nucleotide binding (GO:0000166)
InterPro IPR002313 Lysyl-tRNA synthetase, class II; HMMTigr:TIGR00499 lysS_bact
InterPro IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N); HMMPfam:PF00152 tRNA-synt_2
InterPro IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type; HMMPfam:PF01336 tRNA_anti
InterPro IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain; ProfileScan:PS50862 AA_TRNA_LIGASE_II
InterPro IPR012340 Nucleic acid-binding, OB-fold; Gene3D:G3DSA:2.40.50.140 OB_NA_bd_sub
InterPro IPR016027 Nucleic acid-binding, OB-fold-like; superfamily:SSF50249 Nucleic_acid_OB
InterPro IPR018149 Lysyl-tRNA synthetase, class II, C-terminal; FPrintScan:PR00982 TRNASYNTHLYS
InterPro IPR018149 Lysyl-tRNA synthetase, class II, C-terminal; HMMPanther:PTHR22594:SF4 tRNA-synt_lys_2
InterPro IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like; HMMPanther:PTHR22594 aa-tRNA-synt_II
InterPro NULL NULL; Gene3D:G3DSA:3.30.930.10 G3DSA:3.30.930.10
InterPro NULL NULL; superfamily:SSF55681 SSF55681
Blast Hits [TAIR_pep] AT3G13490.1 | Symbols: OVA5, ATKRS-2 | OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding | chr3:4395984-4399302 REVERSE
Blast Hits [nr] ref|ZP_01471664.1| lysyl-tRNA synthetase [Synechococcus sp. RS9916] gi|116069707|gb|EAU75459.1| lysyl-tRNA synthetase [Synechococcus sp. RS9916]
Blast Hits [pln_est] gb|CT916845|CT916845 CT916845 Phaeodactylum tricornutum nitrate starved (50 uM for 3 days in chemostat culture) Phaeodactylum tricornutum cDNA 5', mRNA sequence.
Blast Hits [sprot] SYK_SYNSC (sp|Q3ANE6) Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=lysS PE=3 SV=1
SynRCC307_0140 InterPro IPR000811 Glycosyl transferase, family 35; HMMPanther:PTHR11468 Glyco_trans_35
SynRCC307_0157 InterPro IPR001140 ABC transporter, transmembrane domain; HMMPfam:PF00664 ABC_membrane
SynRCC307_0158 InterPro IPR004516 Histidyl-tRNA synthetase, class IIa; HMMPanther:PTHR11476 His-tRNA_synth
SynRCC307_0225 InterPro NULL NULL; HMMPanther:PTHR11455 PTHR11455
SynRCC307_0297 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0300 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0307 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0315 InterPro IPR001731 Tetrapyrrole biosynthesis, porphobilinogen synthase; HMMPanther:PTHR11458 AlaD_dehydratase
SynRCC307_0334 InterPro IPR004114 THUMP; HMMPfam:PF02926 THUMP
InterPro IPR004114 THUMP; ProfileScan:PS51165 THUMP
SynRCC307_0349 InterPro IPR011146 Histidine triad-like motif; superfamily:SSF54197 His_triad-like_motif
SynRCC307_0410 InterPro IPR021586 Transcription regulator TrmB, C-terminal; HMMPfam:PF11495 Regulator_TrmB
SynRCC307_0450 InterPro IPR012319 DNA glycosylase/AP lyase, catalytic domain; HMMPfam:PF01149 Fapy_DNA_glyco
SynRCC307_0488 InterPro IPR001140 ABC transporter, transmembrane domain; HMMPfam:PF00664 ABC_membrane
SynRCC307_0551 GO term Biological Process: oxidation reduction (GO:0055114)
InterPro NULL NULL; HMMPanther:PTHR11496 PTHR11496
SynRCC307_0598 GO term Biological Process: oxidation reduction (GO:0055114)
InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0604 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0670 InterPro IPR000298 Cytochrome c oxidase, subunit III; HMMPanther:PTHR11403 CytC_oxdse_III
SynRCC307_0744 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0771 InterPro IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site; PatternScan:PS00114 PRPP_SYNTHETASE
SynRCC307_0777 InterPro IPR018496 Pseudouridine synthase, RsuA and RluB/E/F, conserved site; PatternScan:PS01149 PSI_RSU
SynRCC307_0784 InterPro IPR000374 Phosphatidate cytidylyltransferase; HMMPfam:PF01148 CTP_transf_1
SynRCC307_0787 GO term Biological Process: oxidation reduction (GO:0055114)
InterPro NULL NULL; HMMPanther:PTHR11496 PTHR11496
SynRCC307_0790 InterPro NULL NULL; HMMPanther:PTHR11482 PTHR11482
InterPro NULL NULL; HMMPanther:PTHR11482:SF5 PTHR11482:SF5
SynRCC307_0793 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0800 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_0837 InterPro IPR001140 ABC transporter, transmembrane domain; HMMPfam:PF00664 ABC_membrane
SynRCC307_0876 InterPro NULL NULL; HMMPanther:PTHR11451 PTHR11451
InterPro NULL NULL; HMMPanther:PTHR11451:SF3 PTHR11451:SF3
SynRCC307_0879 InterPro IPR001114 Adenylosuccinate synthetase; HMMPanther:PTHR11846 Asucc_synthtase
InterPro IPR001114 Adenylosuccinate synthetase; HMMPfam:PF00709 Adenylsucc_synt
InterPro IPR001114 Adenylosuccinate synthetase; HMMSmart:SM00788 Adenylsucc_synt
InterPro IPR001114 Adenylosuccinate synthetase; HMMTigr:TIGR00184 purA
SynRCC307_0886 InterPro IPR011148 N-acetylglutamate kinase; HMMPIR:PIRSF000728 NAGK
SynRCC307_0945 InterPro NULL NULL; HMMPanther:PTHR11451 PTHR11451
InterPro NULL NULL; HMMPanther:PTHR11451:SF5 PTHR11451:SF5
SynRCC307_0976 InterPro IPR001140 ABC transporter, transmembrane domain; HMMPfam:PF00664 ABC_membrane
SynRCC307_0980 InterPro NULL NULL; HMMPanther:PTHR11405 PTHR11405
SynRCC307_1029 InterPro IPR001107 Band 7 protein; HMMPfam:PF01145 Band_7
SynRCC307_1125 InterPro NULL NULL; HMMPanther:PTHR11405 PTHR11405
SynRCC307_1140 Gene product Menaquinone biosynthesis protein MenD (2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / 2-oxoglutarate decarboxylase)
Gene symbol menD
Function Coenzyme transport and metabolism: Coenzyme transport and metabolism
GO term Biological Process: menaquinone biosynthetic process (GO:0009234)
GO term Molecular Function: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity (GO:0070204)
GO term Molecular Function: thiamin pyrophosphate binding (GO:0030976)
InterPro IPR004433 Menaquinone biosynthesis protein MenD; HMMTigr:TIGR00173 menD
InterPro IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; HMMPfam:PF02776 TPP_enzyme_N
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.970 G3DSA:3.40.50.970
InterPro NULL NULL; HMMPanther:PTHR18968 PTHR18968
InterPro NULL NULL; HMMPanther:PTHR18968:SF3 PTHR18968:SF3
InterPro NULL NULL; superfamily:SSF52518 SSF52518
Blast Hits [TAIR_pep] AT1G68890.1 | Symbols: | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | chr1:25896988-25906553 FORWARD
Blast Hits [nr] ref|ZP_01086107.1| Menaquinone biosynthesis protein [Synechococcus sp. WH 5701] gi|87282209|gb|EAQ74170.1| Menaquinone biosynthesis protein [Synechococcus sp. WH 5701]
Blast Hits [pln_est] dbj|EE195369|EE195369 CC-L01_059_A11 Coffea young leaves Coffea canephora cDNA clone CC-L01_059_A11, mRNA sequence.
Blast Hits [sprot] MEND_SYNS3 (sp|Q0I9Z1) 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase OS=Synechococcus sp. (strain CC9311) GN=menD PE=3 SV=1
SynRCC307_1141 Gene product Napthoate synthase
Gene symbol menB
Function Coenzyme transport and metabolism: Coenzyme transport and metabolism
GO term Biological Process: menaquinone biosynthetic process (GO:0009234)
GO term Biological Process: metabolic process (GO:0008152)
GO term Molecular Function: catalytic activity (GO:0003824)
GO term Molecular Function: naphthoate synthase activity (GO:0008935)
InterPro IPR001753 Crotonase, core; HMMPfam:PF00378 ECH
InterPro IPR010198 Naphthoate synthase; HMMTigr:TIGR01929 menB
InterPro IPR018376 Enoyl-CoA hydratase/isomerase, conserved site; PatternScan:PS00166 ENOYL_COA_HYDRATASE
InterPro NULL NULL; Gene3D:G3DSA:3.90.226.10 G3DSA:3.90.226.10
InterPro NULL NULL; HMMPanther:PTHR11941 PTHR11941
InterPro NULL NULL; superfamily:SSF52096 SSF52096
Blast Hits [TAIR_pep] AT1G60550.1 | Symbols: ECHID, DHNS | ECHID (ENOYL-COA HYDRATASE/ISOMERASE D); catalytic/ naphthoate synthase | chr1:22305988-22308092 REVERSE
Blast Hits [nr] ref|ZP_01086108.1| Naphthoate synthase [Synechococcus sp. WH 5701] gi|87282210|gb|EAQ74171.1| Naphthoate synthase [Synechococcus sp. WH 5701]
Blast Hits [pln_est] dbj|ES790070|ES790070 061024AVBC002424CT (AVBC) Royal Gala young shoot Malus x domestica cDNA clone AVBCC00242, mRNA sequence.
Blast Hits [sprot] MENB_PASMU (sp|Q9CLV5) Naphthoate synthase OS=Pasteurella multocida GN=menB PE=3 SV=1
SynRCC307_1142 Gene product hypothetical protein
Function Function unknown: Function unknown
InterPro IPR005490 YkuD domain; HMMPfam:PF03734 YkuD
Blast Hits [TAIR_pep] AT1G27720.1 | Symbols: TAF4, TAF4B | TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor | chr1:9643351-9647376 REVERSE
Blast Hits [nr] ref|YP_001227299.1| hypothetical protein SynRCC307_1043 [Synechococcus sp. RCC307] gi|147850452|emb|CAK27946.1| Conserved hypothetical protein [Synechococcus sp. RCC307]
Blast Hits [pln_est] dbj|EG967467|EG967467 TH24-203 Tamarix hispida roots Tamarix hispida cDNA clone 24h-12H01.abd, mRNA sequence.
Blast Hits [sprot] YQJB_BACSU (sp|P54539) Putative L,D-transpeptidase YqjB OS=Bacillus subtilis GN=yqjB PE=3 SV=1
SynRCC307_1143 Gene product hypothetical protein
Function Function unknown: Function unknown
InterPro IPR005490 YkuD domain; HMMPfam:PF03734 YkuD
Blast Hits [TAIR_pep] AT3G55010.2 | Symbols: ATPURM, PUR5 | PUR5; ATP binding / phosphoribosylformylglycinamidine cyclo-ligase | chr3:20386818-20388549 FORWARD
Blast Hits [nr] ref|ZP_01080051.1| hypothetical protein RS9917_11350 [Synechococcus sp. RS9917] gi|86167774|gb|EAQ69032.1| hypothetical protein RS9917_11350 [Synechococcus sp. RS9917]
Blast Hits [pln_est] dbj|EX927362|EX927362 lk99d11.g7 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence.
Blast Hits [sprot] YQJB_BACSU (sp|P54539) Putative L,D-transpeptidase YqjB OS=Bacillus subtilis GN=yqjB PE=3 SV=1
SynRCC307_1144 Gene product glycogen synthase
Gene symbol glgA
Function Carbohydrate transport and metabolism: Carbohydrate transport and metabolism
GO term Biological Process: biosynthetic process (GO:0009058)
GO term Biological Process: glucan biosynthetic process (GO:0009250)
GO term Molecular Function: starch synthase activity (GO:0009011)
InterPro IPR001296 Glycosyl transferase, group 1; HMMPfam:PF00534 Glycos_transf_1
InterPro IPR011835 Glycogen/starch synthases, ADP-glucose type; HMMTigr:TIGR02095 glgA
InterPro IPR013534 Starch synthase, catalytic domain; HMMPfam:PF08323 Glyco_transf_5
InterPro NULL NULL; HMMPanther:PTHR12526 PTHR12526
InterPro NULL NULL; HMMPanther:PTHR12526:SF17 PTHR12526:SF17
InterPro NULL NULL; superfamily:SSF53756 SSF53756
Blast Hits [TAIR_pep] AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | ATSS4; transferase, transferring glycosyl groups | chr4:10082221-10087044 FORWARD
Blast Hits [nr] ref|YP_001224749.1| glycogen synthase [Synechococcus sp. WH 7803] gi|166225988|sp|A5GKI7.1|GLGA_SYNPW RecName: Full=Glycogen synthase; AltName: Full=Starch [bacterial glycogen] synthase gi|147847901|emb|CAK23452.1| Glycosyltransferase of family GT5; probable glycogen synthase [Synechococcus sp. WH 7803]
Blast Hits [pln_est] dbj|EY105863|EY105863 CAZI4452.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI4452 5', mRNA sequence.
Blast Hits [sprot] GLGA_SYNPW (sp|A5GKI7) Glycogen synthase OS=Synechococcus sp. (strain WH7803) GN=glgA PE=3 SV=1
SynRCC307_1146 Gene product UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alani ne ligase
Gene symbol murF
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
GO term Biological Process: biosynthetic process (GO:0009058)
GO term Biological Process: cell division (GO:0051301)
GO term Biological Process: peptidoglycan biosynthetic process (GO:0009252)
GO term Biological Process: peptidoglycan-based cell wall biogenesis (GO:0009273)
GO term Biological Process: regulation of cell shape (GO:0008360)
GO term Cellular Component: cytoplasm (GO:0005737)
GO term Molecular Function: ATP binding (GO:0005524)
GO term Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
GO term Molecular Function: ligase activity (GO:0016874)
InterPro IPR000713 Mur ligase, N-terminal; HMMPfam:PF01225 Mur_ligase
InterPro IPR004101 Mur ligase, C-terminal; Gene3D:G3DSA:3.90.190.20 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; HMMPfam:PF02875 Mur_ligase_C
InterPro IPR004101 Mur ligase, C-terminal; superfamily:SSF53244 Mur_ligase_C
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMPanther:PTHR23135:SF3 MurF
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMTigr:TIGR01143 murF
InterPro IPR013221 Mur ligase, central; Gene3D:G3DSA:3.40.1190.10 Mur_ligase_cen
InterPro IPR013221 Mur ligase, central; HMMPfam:PF08245 Mur_ligase_M
InterPro IPR013221 Mur ligase, central; superfamily:SSF53623 Mur_ligase_cen
InterPro NULL NULL; HMMPanther:PTHR23135 PTHR23135
InterPro NULL NULL; superfamily:SSF63418 SSF63418
Blast Hits [TAIR_pep] AT1G59790.1 | Symbols: | cullin-related | chr1:22001504-22003385 FORWARD
Blast Hits [nr] ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805] gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
Blast Hits [pln_est] gb|GT241128|GT241128 PCO0140.CR_P06 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0140_P06 3', mRNA sequence.
Blast Hits [sprot] MURF_SYNY3 (sp|P45450) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Synechocystis sp. (strain PCC 6803) GN=murF PE=3 SV=1
SynRCC307_1147 Gene product Small-conductance mechanosensitive channel
Gene symbol mscS
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
GO term Biological Process: transmembrane transport (GO:0055085)
GO term Cellular Component: membrane (GO:0016020)
InterPro IPR006685 Mechanosensitive ion channel MscS; HMMPfam:PF00924 MS_channel
InterPro IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain; superfamily:SSF50182 Sm_like_riboprot
Blast Hits [TAIR_pep] AT4G00290.1 | Symbols: | mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein | chr4:123097-125300 REVERSE
Blast Hits [nr] ref|YP_730687.1| mechanosensitive ion channel family protein [Synechococcus sp. CC9311] gi|113881995|gb|ABI46953.1| Mechanosensitive ion channel family protein [Synechococcus sp. CC9311]
Blast Hits [pln_est] dbj|DC927809|DC927809 DC927809 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp. patens cDNA clone ppaa37c24 3', mRNA sequence.
Blast Hits [sprot] Y812_AQUAE (sp|O66994) Uncharacterized mscS family protein aq_812 OS=Aquifex aeolicus GN=aq_812 PE=3 SV=1
SynRCC307_1148 Gene product Bifunctional glmU protein (UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase)
Gene symbol glmU
Function Cell wall/membrane biogenesis: Cell wall/membrane biogenesis
GO term Biological Process: biosynthetic process (GO:0009058)
GO term Biological Process: cell morphogenesis (GO:0000902)
GO term Biological Process: lipopolysaccharide biosynthetic process (GO:0009103)
GO term Biological Process: peptidoglycan biosynthetic process (GO:0009252)
GO term Cellular Component: cytoplasm (GO:0005737)
GO term Molecular Function: UDP-N-acetylglucosamine diphosphorylase activity (GO:0003977)
GO term Molecular Function: glucosamine-1-phosphate N-acetyltransferase activity (GO:0019134)
GO term Molecular Function: magnesium ion binding (GO:0000287)
GO term Molecular Function: nucleotidyltransferase activity (GO:0016779)
GO term Molecular Function: transferase activity (GO:0016740)
InterPro IPR005835 Nucleotidyl transferase; HMMPfam:PF00483 NTP_transferase
InterPro IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HMMTigr:TIGR01173 glmU
InterPro IPR011004 Trimeric LpxA-like; superfamily:SSF51161 Trimer_LpxA_like
InterPro NULL NULL; Gene3D:G3DSA:2.160.10.10 G3DSA:2.160.10.10
InterPro NULL NULL; Gene3D:G3DSA:3.90.550.10 G3DSA:3.90.550.10
InterPro NULL NULL; HMMPanther:PTHR22572 PTHR22572
InterPro NULL NULL; HMMPanther:PTHR22572:SF17 PTHR22572:SF17
InterPro NULL NULL; superfamily:SSF53448 SSF53448
Blast Hits [TAIR_pep] AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase | chr2:16589401-16590741 FORWARD
Blast Hits [nr] ref|ZP_01080055.1| UDP-N-acetylglucosamine pyrophosphorylase [Synechococcus sp. RS9917] gi|86167778|gb|EAQ69036.1| UDP-N-acetylglucosamine pyrophosphorylase [Synechococcus sp. RS9917]
Blast Hits [pln_est] dbj|DT600035|DT600035 wmi03-13ms1-d01 Wmi03 Welwitschia mirabilis cDNA clone wmi03-13ms1-d01 5', mRNA sequence.
Blast Hits [sprot] GLMU_SYNPX (sp|Q7U7I0) Bifunctional protein glmU OS=Synechococcus sp. (strain WH8102) GN=glmU PE=3 SV=1
SynRCC307_1149 Gene product SAM-dependent methyltransferase
Function Function unknown: Function unknown
InterPro IPR008471 Protein of unknown function DUF752; HMMPfam:PF05430 DUF752
InterPro NULL NULL; Gene3D:G3DSA:3.40.50.150 G3DSA:3.40.50.150
InterPro NULL NULL; superfamily:SSF53335 SSF53335
Blast Hits [TAIR_pep] AT3G11380.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:3564079-3565779 FORWARD
Blast Hits [nr] ref|YP_001017895.1| hypothetical protein P9303_18881 [Prochlorococcus marinus str. MIT 9303] gi|123963874|gb|ABM78630.1| Uncharacterized conserved protein [Prochlorococcus marinus str. MIT 9303]
Blast Hits [pln_est] gb|GR816849|GR816849 CBPU1300.b1 CBPU Ostreococcus sp. RCC809 normal conditions (H) Ostreococcus sp. RCC809 cDNA clone CBPU1300 5', mRNA sequence.
Blast Hits [sprot] Y670_METJA (sp|Q58084) Uncharacterized protein MJ0670 OS=Methanocaldococcus jannaschii GN=MJ0670 PE=4 SV=1
SynRCC307_1185 InterPro NULL NULL; HMMPanther:PTHR11455 PTHR11455
SynRCC307_1214 GO term Biological Process: oxidation reduction (GO:0055114)
InterPro IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase; HMMPIR:PIRSF000114 Glycerol-3-P_dh
SynRCC307_1217 InterPro IPR011146 Histidine triad-like motif; superfamily:SSF54197 His_triad-like_motif
SynRCC307_1252 GO term Biological Process: oxidation reduction (GO:0055114)
InterPro IPR006114 6-phosphogluconate dehydrogenase, C-terminal; HMMPfam:PF00393 6PGD
SynRCC307_1291 InterPro IPR021147 Uncharacterised protein family UPF0283; HMMPfam:PF05128 DUF697
SynRCC307_1322 InterPro IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal; HMMPfam:PF07499 RuvA_C
SynRCC307_1331 InterPro IPR006274 Carbamoyl phosphate synthase, small subunit; HMMPanther:PTHR11405:SF4 CarA_synth_small
InterPro NULL NULL; HMMPanther:PTHR11405 PTHR11405
SynRCC307_1334 InterPro IPR001140 ABC transporter, transmembrane domain; HMMPfam:PF00664 ABC_membrane
SynRCC307_1347 InterPro IPR001672 Phosphoglucose isomerase (PGI); HMMPanther:PTHR11469 G6P_Isomerase
SynRCC307_1369 InterPro IPR004516 Histidyl-tRNA synthetase, class IIa; HMMPanther:PTHR11476 His-tRNA_synth
SynRCC307_1442 InterPro IPR021147 Uncharacterised protein family UPF0283; HMMPfam:PF05128 DUF697
SynRCC307_1601 InterPro IPR021562 Protein of unknown function DUF3007; HMMPfam:PF11460 DUF3007
SynRCC307_1686 InterPro IPR018496 Pseudouridine synthase, RsuA and RluB/E/F, conserved site; PatternScan:PS01149 PSI_RSU
SynRCC307_1728 InterPro IPR001107 Band 7 protein; HMMPfam:PF01145 Band_7
SynRCC307_1738 InterPro IPR015865 Riboflavin kinase; superfamily:SSF82114 Riboflavin_kinase
SynRCC307_1755 InterPro NULL NULL; HMMPanther:PTHR11405 PTHR11405
InterPro NULL NULL; HMMPanther:PTHR11405:SF1 PTHR11405:SF1
SynRCC307_1791 GO term Biological Process: oxidation reduction (GO:0055114)
InterPro IPR001189 Manganese/iron superoxide dismutase; HMMPanther:PTHR11404 SODismutase
InterPro NULL NULL; HMMPanther:PTHR11404:SF8 PTHR11404:SF8
SynRCC307_2014 InterPro IPR011440 Protein of unknown function DUF1543; HMMPfam:PF07566 DUF1543
SynRCC307_2101 InterPro IPR001140 ABC transporter, transmembrane domain; HMMPfam:PF00664 ABC_membrane
SynRCC307_2114 Gene product Possible Fe-S cluster containing protein
Function Energy production and conversion: Energy production and conversion
GO term Molecular Function: electron carrier activity (GO:0009055)
GO term Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain; ProfileScan:PS51379 4FE4S_FER_2
InterPro IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; PatternScan:PS00198 4FE4S_FER_1
InterPro IPR021039 Iron-sulphur binding protein LdpA, C-terminal; HMMPfam:PF12617 LdpA_C
InterPro NULL NULL; Gene3D:G3DSA:3.30.70.20 G3DSA:3.30.70.20
InterPro NULL NULL; superfamily:SSF54862 SSF54862
Blast Hits [TAIR_pep] AT3G13640.1 | Symbols: ATRLI1 | ATRLI1; transporter | chr3:4458751-4461323 REVERSE
Blast Hits [nr] ref|NP_898156.1| putative ldpA protein [Synechococcus sp. WH 8102] gi|33633375|emb|CAE08580.1| putative ldpA protein [Synechococcus sp. WH 8102]
Blast Hits [pln_est] dbj|EL348323|EL348323 CCEL4450.b1_C10.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL4450, mRNA sequence.
Blast Hits [sprot] RNFB_SODGM (sp|Q2NSZ6) Electron transport complex protein rnfB OS=Sodalis glossinidius (strain morsitans) GN=rnfB PE=3 SV=1
SynRCC307_2122 InterPro IPR001351 Ribosomal protein S3, C-terminal; Gene3D:G3DSA:3.30.1140.32 Ribosomal_S3_C
SynRCC307_2123 InterPro IPR000114 Ribosomal protein L16; FPrintScan:PR00060 RIBOSOMALL16
InterPro IPR000114 Ribosomal protein L16; HMMPanther:PTHR12220 Ribosomal_L16
InterPro IPR000114 Ribosomal protein L16; HMMTigr:TIGR01164 rplP_bact
SynRCC307_2141 InterPro IPR001406 Pseudouridine synthase I, TruA; HMMPanther:PTHR11142 PseudoU_synth_1
SynRCC307_2144 InterPro IPR002150 Ribosomal protein L31; PatternScan:PS01143 RIBOSOMAL_L31
SynRCC307_2162 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_2178 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_2182 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_2204 InterPro NULL NULL; HMMPanther:PTHR11405 PTHR11405
SynRCC307_2229 InterPro IPR001576 Phosphoglycerate kinase; HMMPanther:PTHR11406 PGK
SynRCC307_2277 GO term Biological Process: oxidation reduction (GO:0055114)
InterPro IPR001694 NADH:ubiquinone oxidoreductase, subunit 1; HMMPanther:PTHR11432 Resp_NADH_DH_1
SynRCC307_2288 InterPro NULL NULL; HMMPanther:PTHR11455 PTHR11455
SynRCC307_2356 InterPro NULL NULL; HMMPanther:PTHR21141 PTHR21141
InterPro NULL NULL; HMMPanther:PTHR21141:SF3 PTHR21141:SF3
SynRCC307_2378 InterPro IPR002985 Arginine decarboxylase; HMMPanther:PTHR11482:SF3 Arg_decrbxlase
InterPro NULL NULL; HMMPanther:PTHR11482 PTHR11482
SynRCC307_2443 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_2492 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_2510 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_2528 InterPro IPR005862 Phosphoribosylglycinamide formyltransferase 2; HMMTigr:TIGR01142 purT
SynRCC307_1817 InterPro IPR013114 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; HMMPfam:PF07977 FabA
SynRCC307_1824 InterPro IPR010624 Circadian clock protein KaiC; ProfileScan:PS51146 KAIC
SynRCC307_1828 InterPro IPR001684 Ribosomal protein L27; BlastProDom:PD003114 Ribosomal_L27
SynRCC307_1861 InterPro NULL NULL; Gene3D:G3DSA:1.10.1140.10 G3DSA:1.10.1140.10
SynRCC307_1868 InterPro IPR021147 Uncharacterised protein family UPF0283; HMMPfam:PF05128 DUF697
SynRCC307_1877 InterPro IPR000131 ATPase, F1 complex, gamma subunit; HMMTigr:TIGR01146 ATPsyn_F1gamma
SynRCC307_1879 InterPro IPR000711 ATPase, F1 complex, OSCP/delta subunit; HMMTigr:TIGR01145 ATP_synt_delta
SynRCC307_1880 InterPro IPR005864 ATPase, F0 complex, subunit B, bacterial; HMMTigr:TIGR01144 ATP_synt_b
SynRCC307_1883 InterPro IPR000568 ATPase, F0 complex, subunit A; HMMPanther:PTHR11410 ATPase_F0_A
SynRCC307_1899 InterPro NULL NULL; HMMPanther:PTHR11444 PTHR11444
InterPro NULL NULL; HMMPanther:PTHR11444:SF2 PTHR11444:SF2
SynRCC307_1934 InterPro IPR000298 Cytochrome c oxidase, subunit III; HMMPanther:PTHR11403 CytC_oxdse_III
SynRCC307_1940 InterPro NULL NULL; HMMPanther:PTHR11444 PTHR11444
InterPro NULL NULL; HMMPanther:PTHR11444:SF1 PTHR11444:SF1
SynRCC307_1954 InterPro NULL NULL; superfamily:SSF102114 SSF102114
SynRCC307_1114 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [TAIR_pep] AT1G30680.1 | Symbols: | toprim domain-containing protein | chr1:10881665-10886060 FORWARD
Blast Hits [nr] ref|YP_001017083.1| hypothetical protein P9303_10691 [Prochlorococcus marinus str. MIT 9303] gi|123963062|gb|ABM77818.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303]
Blast Hits [pln_est] gb|FS325293|FS325293 FS325293 LjFL3 Lotus japonicus cDNA clone LjFL3-021-CB04 5', mRNA sequence.
SynRCC307_1145 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [TAIR_pep] AT2G37460.1 | Symbols: | nodulin MtN21 family protein | chr2:15726667-15729010 REVERSE
Blast Hits [nr] ref|ZP_01123898.1| hypothetical protein WH7805_01822 [Synechococcus sp. WH 7805] gi|88787376|gb|EAR18533.1| hypothetical protein WH7805_01822 [Synechococcus sp. WH 7805]
Blast Hits [sprot] RECF_AGRT5 (sp|Q8UJ65) DNA replication and repair protein recF OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=recF PE=3 SV=1
SynRCC307_0007 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0015 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0016 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0026 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0028 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0033 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0035 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0068 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0096 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0148 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0153 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0155 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0187 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0213 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0214 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0215 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0227 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0231 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0233 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0237 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0238 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0269 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0275 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0293 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0303 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0325 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0339 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0358 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0360 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0389 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0390 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0428 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0455 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0457 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0459 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0462 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0471 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0528 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0549 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0583 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0594 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0615 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0626 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0638 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0659 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0665 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0671 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0681 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0704 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0723 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0739 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0759 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0760 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0826 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0827 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0828 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0882 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0898 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0942 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0954 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0968 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0971 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0991 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0997 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_0926 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1106 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1129 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1202 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1213 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1227 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1254 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1267 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1269 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1284 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1314 GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
Blast Hits [TAIR_pep] AT2G26930.1 | Symbols: ATCDPMEK, PDE277, ISPE | ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE); 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | chr2:11491829-11494229 REVERSE
SynRCC307_1336 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1361 GO term Molecular Function: phosphate transmembrane transporter activity (GO:0015114)
SynRCC307_1362 GO term Molecular Function: phosphate transmembrane transporter activity (GO:0015114)
SynRCC307_1364 GO term Molecular Function: phosphate transmembrane transporter activity (GO:0015114)
SynRCC307_1365 GO term Molecular Function: phosphate transmembrane transporter activity (GO:0015114)
SynRCC307_1381 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1389 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1390 GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
SynRCC307_1434 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1462 GO term Biological Process: oxidation reduction (GO:0055114)
GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
SynRCC307_1476 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1508 GO term Biological Process: oxidation reduction (GO:0055114)
Blast Hits [TAIR_pep] AT4G11410.1 | Symbols: | short-chain dehydrogenase/reductase (SDR) family protein | chr4:6945127-6947186 REVERSE
SynRCC307_1564 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1572 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1583 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1585 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1586 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1565 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1566 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1674 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1683 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1706 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1730 GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
SynRCC307_1751 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1757 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1759 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1602 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2019 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2061 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2062 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2074 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2083 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2115 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2164 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2184 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2203 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2209 GO term Biological Process: oxidation reduction (GO:0055114)
Blast Hits [sprot] CRTW_PARSN (sp|P54972) Beta-carotene ketolase OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtW PE=4 SV=1
SynRCC307_2227 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2257 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2278 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2279 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2280 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2289 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2295 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2307 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2319 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2353 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2390 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2393 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2395 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2440 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2441 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2472 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2479 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2482 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_2516 GO term Molecular Function: phosphate transmembrane transporter activity (GO:0015114)
SynRCC307_2518 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1814 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1840 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1844 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1871 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1892 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1894 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1928 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1947 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1962 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1988 GO term Biological Process: oxidation reduction (GO:0055114)
SynRCC307_1993 GO term Biological Process: oxidation reduction (GO:0055114)
Blast Hits [sprot] CRTW_PARSN (sp|P54972) Beta-carotene ketolase OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtW PE=4 SV=1
SynRCC307_0171 Blast Hits [nr] ref|YP_001223962.1| hypothetical protein SynWH7803_0239 [Synechococcus sp. WH 7803] gi|147847114|emb|CAK22665.1| Uncharacterized membrane protein [Synechococcus sp. WH 7803]
SynRCC307_0184 Blast Hits [nr] ref|ZP_06890272.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gi|296254114|gb|EFH01254.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
SynRCC307_0356 Blast Hits [nr] ref|ZP_01081145.1| Dienelactone hydrolase [Synechococcus sp. RS9917] gi|86167068|gb|EAQ68329.1| Dienelactone hydrolase [Synechococcus sp. RS9917]
SynRCC307_0365 Blast Hits [nr] ref|YP_171142.1| hypothetical protein syc0432_c [Synechococcus elongatus PCC 6301] gi|81299926|ref|YP_400134.1| hypothetical protein Synpcc7942_1117 [Synechococcus elongatus PCC 7942] gi|56685400|dbj|BAD78622.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168807|gb|ABB57147.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
SynRCC307_0509 Blast Hits [nr] ref|YP_291170.1| hypothetical protein Tfu_3114 [Thermobifida fusca YX] gi|71917245|gb|AAZ57147.1| putative membrane protein [Thermobifida fusca YX]
SynRCC307_0705 Blast Hits [nr] ref|ZP_01123114.1| hypothetical protein WH7805_13663 [Synechococcus sp. WH 7805] gi|88788816|gb|EAR19971.1| hypothetical protein WH7805_13663 [Synechococcus sp. WH 7805]
SynRCC307_0750 Blast Hits [nr] ref|YP_743488.1| peptidase M16 domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228199|gb|ABI57998.1| peptidase M16 domain protein [Alkalilimnicola ehrlichii MLHE-1]
SynRCC307_0840 Blast Hits [nr] ref|YP_731146.1| putative endoribonuclease L-PSP [Synechococcus sp. CC9311] gi|113882319|gb|ABI47277.1| putative endoribonuclease L-PSP [Synechococcus sp. CC9311]
SynRCC307_0877 Blast Hits [nr] ref|ZP_06077352.1| glycoside hydrolase family 92 [Bacteroides sp. 2_1_33B] gi|262295114|gb|EEY83046.1| glycoside hydrolase family 92 [Bacteroides sp. 2_1_33B]
SynRCC307_0940 Blast Hits [nr] ref|ZP_01085278.1| hypothetical protein WH5701_11144 [Synechococcus sp. WH 5701] gi|87282805|gb|EAQ74762.1| hypothetical protein WH5701_11144 [Synechococcus sp. WH 5701]
SynRCC307_1043 Blast Hits [nr] ref|YP_001227398.1| hypothetical protein SynRCC307_1142 [Synechococcus sp. RCC307] gi|147850551|emb|CAK28045.1| Uncharacterized conserved secreted protein [Synechococcus sp. RCC307]
SynRCC307_1081 Blast Hits [nr] ref|YP_758830.1| carboxyl transferase domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114737871|gb|ABI75996.1| carboxyl transferase domain protein [Hyphomonas neptunium ATCC 15444]
SynRCC307_1130 Blast Hits [nr] ref|YP_001017162.1| hypothetical protein P9303_11481 [Prochlorococcus marinus str. MIT 9303] gi|123963141|gb|ABM77897.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303]
SynRCC307_1132 Blast Hits [nr] ref|NP_894798.1| hypothetical protein PMT0967 [Prochlorococcus marinus str. MIT 9313] gi|33635155|emb|CAE21142.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313]
SynRCC307_1173 Blast Hits [nr] ref|NP_894803.1| DNA polymerase N-terminal dom [Prochlorococcus marinus str. MIT 9313] gi|124022863|ref|YP_001017170.1| DNA polymerase N-terminal domain-containing protein [Prochlorococcus marinus str. MIT 9303] gi|33640692|emb|CAE21147.1| possible DNA polymerase (viral) N-terminal dom [Prochlorococcus marinus str. MIT 9313] gi|123963149|gb|ABM77905.1| possible DNA polymerase N-terminal domain-containing protein [Prochlorococcus marinus str. MIT 9303]
SynRCC307_1338 Blast Hits [nr] ref|ZP_01080072.1| hypothetical protein RS9917_11455 [Synechococcus sp. RS9917] gi|86167795|gb|EAQ69053.1| hypothetical protein RS9917_11455 [Synechococcus sp. RS9917]
SynRCC307_1408 Blast Hits [nr] ref|YP_001804977.1| putative ATP-dependent Clp protease, adaptor protein [Cyanothece sp. ATCC 51142] gi|171699930|gb|ACB52911.1| putative ATP-dependent Clp protease, adaptor protein [Cyanothece sp. ATCC 51142]
SynRCC307_1590 Blast Hits [nr] ref|ZP_01085342.1| hypothetical protein WH5701_11464 [Synechococcus sp. WH 5701] gi|87282869|gb|EAQ74826.1| hypothetical protein WH5701_11464 [Synechococcus sp. WH 5701]
SynRCC307_1616 Blast Hits [nr] ref|YP_002481885.1| hypothetical protein Cyan7425_1141 [Cyanothece sp. PCC 7425] gi|219863185|gb|ACL43524.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
SynRCC307_1639 Blast Hits [nr] ref|XP_001643804.1| hypothetical protein Kpol_1044p4 [Vanderwaltozyma polyspora DSM 70294] gi|156114430|gb|EDO15946.1| hypothetical protein Kpol_1044p4 [Vanderwaltozyma polyspora DSM 70294]
SynRCC307_2031 Blast Hits [nr] ref|YP_001802178.1| extracellular solute-binding protein [Cyanothece sp. ATCC 51142] gi|171697131|gb|ACB50112.1| probable extracellular solute-binding protein, family 1 [Cyanothece sp. ATCC 51142]
SynRCC307_2210 Blast Hits [nr] ref|YP_730881.1| hypothetical protein sync_1677 [Synechococcus sp. CC9311] gi|113882156|gb|ABI47114.1| conserved hypothetical protein [Synechococcus sp. CC9311]
SynRCC307_2270 Blast Hits [nr] ref|NP_053430.1| hypothetical protein pTi-SAKURA_p192 [Agrobacterium tumefaciens] gi|41223318|ref|NP_396535.2| arginase [Agrobacterium tumefaciens str. C58] gi|114144|sp|P14012.1|ARGI_AGRT5 RecName: Full=Arginase gi|39090|emb|CAA33894.1| unnamed protein product [Agrobacterium tumefaciens] gi|496536|emb|CAA82964.1| arginase [Agrobacterium tumefaciens] gi|6498363|dbj|BAA87815.1| tiorf190 [Agrobacterium tumefaciens] gi|159141742|gb|AAK90976.2| arginase [Agrobacterium tumefaciens str. C58]
SynRCC307_2299 Blast Hits [nr] ref|ZP_01085345.1| hypothetical protein WH5701_11479 [Synechococcus sp. WH 5701] gi|87282872|gb|EAQ74829.1| hypothetical protein WH5701_11479 [Synechococcus sp. WH 5701]
SynRCC307_2379 Blast Hits [nr] ref|YP_001226114.1| cAMP-dependent protein kinase activator/regulatory subunit [Synechococcus sp. WH 7803] gi|147849266|emb|CAK24817.1| Putative cAMP-binding domain-Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase [Synechococcus sp. WH 7803]
SynRCC307_2407 Blast Hits [nr] ref|ZP_01084271.1| hypothetical protein WH5701_02114 [Synechococcus sp. WH 5701] gi|87283648|gb|EAQ75602.1| hypothetical protein WH5701_02114 [Synechococcus sp. WH 5701]
SynRCC307_2480 Blast Hits [nr] ref|ZP_01079245.1| possible DNA mismatch repair proteins, MutS [Synechococcus sp. RS9917] gi|86169114|gb|EAQ70370.1| possible DNA mismatch repair proteins, MutS [Synechococcus sp. RS9917]
SynRCC307_1157 Blast Hits [sprot] CWLB_BACSU (sp|Q02114) N-acetylmuramoyl-L-alanine amidase lytC OS=Bacillus subtilis GN=lytC PE=1 SV=1
SynRCC307_1259 Blast Hits [sprot] GLPK_ROSDO (sp|Q165D5) Glycerol kinase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glpK PE=3 SV=1
SynRCC307_1643 Blast Hits [sprot] HEM1_VIBF1 (sp|Q5E6T4) Glutamyl-tRNA reductase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hemA PE=3 SV=1
SynRCC307_1889 Blast Hits [sprot] PYC1_SYNP6 (sp|P06114) Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=apcC PE=3 SV=1
SynRCC307_2112 Blast Hits [sprot] GPH_VIBF1 (sp|Q5E2G4) Phosphoglycolate phosphatase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=VF_2287 PE=3 SV=1
SynRCC307_2195 Blast Hits [sprot] PSBO_SYNE7 (sp|P11472) Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1
SynRCC307_0058 Blast Hits [pln_est] gb|FC079426|FC079426 CACW11456.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cDNA clone CACW11456 5', mRNA sequence.
SynRCC307_0220 Blast Hits [pln_est] dbj|DT631645|DT631645 EST1146576 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFB10 3' end, mRNA sequence.
SynRCC307_0295 Blast Hits [pln_est] gb|GT046114|GT046114 CLS_cLiFproots_61a3_1_b13cLibkit5LD_A07 CLS_cLiFproots_plant Festuca arundinacea cDNA clone 61b13 5', mRNA sequence.
SynRCC307_0402 Blast Hits [pln_est] gb|CX109376|CX109376 RECm1911 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA clone EI003F12, EI063O18, EI095B15, EI049J24, FLAGLB05, EI114P21, EI00 5', mRNA sequence.
SynRCC307_0438 Blast Hits [pln_est] gb|CA101500|CA101500 SCACHR1038A03.g HR1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCACHR1038A03 5', mRNA sequence.
SynRCC307_0731 Blast Hits [pln_est] dbj|EE564884|EE564884 BNZB_UP_114_A09_23AUG2004_079 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
SynRCC307_0737 Blast Hits [pln_est] dbj|EV194628|EV194628 0092114 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
SynRCC307_0841 Blast Hits [pln_est] dbj|DR383833|DR383833 11451485 CERES-AN65 Arabidopsis thaliana cDNA clone 1336739 3', mRNA sequence.
SynRCC307_1180 Blast Hits [pln_est] dbj|DR949726|DR949726 EST1141265 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1RJ04, mRNA sequence.
SynRCC307_1992 Blast Hits [pln_est] gb|BY810685|BY810685 BY810685 RTFL1 Thellungiella halophila cDNA clone RTFL01-16-C19 5' similar to NM_179308.2 Arabidopsis thaliana expressed protein (At1g11400) mRNA, mRNA sequence.
SynRCC307_2006 Blast Hits [pln_est] gb|FG611419|FG611419 stem_S072_F02.SEQ Opium poppy stem cDNA library Papaver somniferum cDNA, mRNA sequence.
SynRCC307_2298 Blast Hits [pln_est] gb|CX109376|CX109376 RECm1911 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA clone EI003F12, EI063O18, EI095B15, EI049J24, FLAGLB05, EI114P21, EI00 5', mRNA sequence.
SynRCC307_2335 Blast Hits [pln_est] dbj|EG715879|EG715879 GTE00011144 Guillardia theta non-normalised Guillardia theta cDNA, mRNA sequence.
SynRCC307_2486 Blast Hits [pln_est] dbj|EL354787|EL354787 CCEM11454.b1_L08.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM11454, mRNA sequence.
SynRCC307_0006 Blast Hits [TAIR_pep] AT3G04240.1 | Symbols: SEC | SEC (secret agent); transferase, transferring glycosyl groups | chr3:1114187-1120722 REVERSE
SynRCC307_0062 Blast Hits [TAIR_pep] AT4G07960.1 | Symbols: ATCSLC12, CSLC12 | ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12); cellulose synthase/ transferase, transferring glycosyl groups | chr4:4802628-4805114 REVERSE
SynRCC307_0121 Blast Hits [TAIR_pep] AT1G55880.1 | Symbols: | pyridoxal-5'-phosphate-dependent enzyme, beta family protein | chr1:20899292-20901140 REVERSE
SynRCC307_0125 Blast Hits [TAIR_pep] AT3G04240.1 | Symbols: SEC | SEC (secret agent); transferase, transferring glycosyl groups | chr3:1114187-1120722 REVERSE
SynRCC307_0139 Blast Hits [TAIR_pep] AT1G11430.1 | Symbols: | plastid developmental protein DAG, putative | chr1:3847273-3848938 FORWARD
SynRCC307_0146 Blast Hits [TAIR_pep] AT5G06580.1 | Symbols: | FAD linked oxidase family protein | chr5:2011486-2016473 REVERSE
SynRCC307_0230 Blast Hits [TAIR_pep] AT4G21490.1 | Symbols: NDB3 | NDB3; NADH dehydrogenase | chr4:11436495-11439326 REVERSE
SynRCC307_0279 Blast Hits [TAIR_pep] AT3G04240.1 | Symbols: SEC | SEC (secret agent); transferase, transferring glycosyl groups | chr3:1114187-1120722 REVERSE
SynRCC307_0294 Blast Hits [TAIR_pep] AT3G24180.2 | Symbols: | catalytic/ glucosylceramidase | chr3:8735011-8741147 REVERSE
SynRCC307_0825 Blast Hits [TAIR_pep] AT5G55660.1 | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species: Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source: NCBI BLink). | chr5:22539375-22543142 FORWARD
SynRCC307_0912 Blast Hits [TAIR_pep] AT3G08800.1 | Symbols: | binding | chr3:2671148-2674910 FORWARD
SynRCC307_0988 Blast Hits [TAIR_pep] AT5G56240.1 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HAP8 (HAPLESS 8) (TAIR:AT5G56250.2); Has 259 Blast hits to 240 proteins in 69 species: Archae - 0; Bacteria - 13; Metazoa - 67; Fungi - 34; Plants - 31; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr5:22760088-22763539 REVERSE
SynRCC307_1028 Blast Hits [TAIR_pep] AT4G00260.1 | Symbols: MEE45 | MEE45 (maternal effect embryo arrest 45); DNA binding / transcription factor | chr4:114971-117051 FORWARD
SynRCC307_1067 Blast Hits [TAIR_pep] AT5G43130.1 | Symbols: TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor | chr5:17315608-17321144 REVERSE
SynRCC307_1069 Blast Hits [TAIR_pep] AT4G10800.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G05675.2); Has 114 Blast hits to 114 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:6643678-6644529 FORWARD
SynRCC307_1170 Blast Hits [TAIR_pep] AT4G02610.1 | Symbols: | tryptophan synthase, alpha subunit, putative | chr4:1147662-1149217 FORWARD
SynRCC307_1260 Blast Hits [TAIR_pep] ATCG01040.1 | Symbols: YCF5 | hypothetical protein | chrC:114461-115447 FORWARD
SynRCC307_1346 Blast Hits [TAIR_pep] AT4G21470.1 | Symbols: ATFMN/FHY | ATFMN/FHY (riboflavin kinase/FMN hydrolase); FMN adenylyltransferase/ riboflavin kinase | chr4:11431284-11433197 FORWARD
SynRCC307_1368 Blast Hits [TAIR_pep] AT1G31190.1 | Symbols: IMPL1 | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase | chr1:11144861-11146800 FORWARD
SynRCC307_1555 Blast Hits [TAIR_pep] AT1G14830.1 | Symbols: ADL1C, ADL5, DRP1C | ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C); GTP binding / GTPase | chr1:5107699-5111470 REVERSE
SynRCC307_1600 Blast Hits [TAIR_pep] AT4G02610.1 | Symbols: | tryptophan synthase, alpha subunit, putative | chr4:1147662-1149217 FORWARD
SynRCC307_1607 Blast Hits [TAIR_pep] AT4G18596.1 | Symbols: | pollen Ole e 1 allergen and extensin family protein | chr4:10239114-10239728 FORWARD
SynRCC307_1619 Blast Hits [TAIR_pep] AT1G31860.1 | Symbols: AT-IE, HISN2 | AT-IE; phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP diphosphatase | chr1:11434250-11436530 REVERSE
SynRCC307_1647 Blast Hits [TAIR_pep] AT5G06580.1 | Symbols: | FAD linked oxidase family protein | chr5:2011486-2016473 REVERSE
SynRCC307_1657 Blast Hits [TAIR_pep] AT2G26770.2 | Symbols: | plectin-related | chr2:11404257-11407743 REVERSE
SynRCC307_1719 Blast Hits [TAIR_pep] AT3G04240.1 | Symbols: SEC | SEC (secret agent); transferase, transferring glycosyl groups | chr3:1114187-1120722 REVERSE
SynRCC307_1747 Blast Hits [TAIR_pep] AT5G11140.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38560.1); Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 7; Metazoa - 1; Fungi - 6; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3545343-3546068 FORWARD
SynRCC307_1772 Blast Hits [TAIR_pep] AT4G21560.3 | Symbols: VPS28-1 | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter | chr4:11469037-11469666 REVERSE
SynRCC307_1797 Blast Hits [TAIR_pep] AT4G31050.1 | Symbols: | lipoyltransferase (LIP2p) | chr4:15114345-15115443 FORWARD
SynRCC307_1878 Blast Hits [TAIR_pep] ATCG00120.1 | Symbols: ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. | chrC:9938-11461 REVERSE
SynRCC307_2022 Blast Hits [TAIR_pep] AT1G47330.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT2G14520.1); Has 6970 Blast hits to 6717 proteins in 1361 species: Archae - 64; Bacteria - 4382; Metazoa - 390; Fungi - 183; Plants - 125; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink). | chr1:17351149-17353739 FORWARD
SynRCC307_2134 Blast Hits [TAIR_pep] AT2G18710.1 | Symbols: SCY1 | SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter | chr2:8112231-8114452 REVERSE
SynRCC307_2155 Blast Hits [TAIR_pep] AT1G64630.1 | Symbols: ATWNK10, WNK10 | WNK10 (WITH NO LYSINE KINASE 10); kinase/ transcription factor | chr1:24019920-24022114 FORWARD
SynRCC307_2190 Blast Hits [TAIR_pep] AT1G48850.1 | Symbols: EMB1144 | EMB1144 (embryo defective 1144); chorismate synthase | chr1:18065154-18067956 REVERSE
SynRCC307_2274 Blast Hits [TAIR_pep] AT1G72040.1 | Symbols: | deoxynucleoside kinase family | chr1:27112159-27114248 REVERSE
SynRCC307_2392 Blast Hits [TAIR_pep] AT3G57050.2 | Symbols: CBL | CBL (cystathionine beta-lyase); cystathionine beta-lyase | chr3:21111939-21114521 REVERSE
SynRCC307_2394 Blast Hits [TAIR_pep] AT5G10190.1 | Symbols: | transporter-related | chr5:3199205-3201140 FORWARD
SynRCC307_2500 Blast Hits [TAIR_pep] AT1G01290.2 | Symbols: CNX3 | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic | chr1:114299-115296 FORWARD

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1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
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1Gene IDc.f. slr1311
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