cyanobase » Acaryochloris marina MBIC11017

Acaryochloris marina MBIC11017

Summary

? | +/- | Top
Data source name GCA_000018105.1
Full name Acaryochloris marina MBIC11017
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
Chromosome 6,503,724 6,333
pREB1 374,161 382
pREB2 356,087 408
pREB3 273,121 362
pREB4 226,680 273
pREB5 177,162 222
pREB6 172,728 188
pREB7 155,110 173
pREB8 120,693 117
pREB9 2,133 4
Total 8,361,599 8,462
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2

Resources

? | +/- | Top
About species GCA_000018105.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000018105.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000018105.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000018105.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000018105.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000018105.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000018105.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000018105.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000018105.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000018105.1/genes/interpro.txt (File format)

MicrobeBase