
{
  "summary": {
    "id": "CYA_0203",
    "type": "Protein Coding",
    "definition": "formamidopyrimidine-DNA glycosylase",
    "functional_category": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/category?class=&subclass=",
    "gene_symbol": "mutM",
    "genes_and_mutants": "/tga/annotations/table?q=Cyanogenes+CYA_0203&pp=100"
  },
  "genomic_context": {
    "location": "Chr:208311..209162",
    "strand": "complement",
    "jbrowse": "http://genome.microbedb.jp/jbrowse/?data=cyanobase%2FGCA_000013205.1&highlight=Chr%3A208311..209162&loc=Chr%3A206311..211162&nav=1&overview=1&tracklist=1&tracks=CyanoBase"
  },
  "transcript": {
    "nucleotide_sequence": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/CYA_0203.fna",
    "length": 852
  },
  "peptide": {
    "translated_sequence": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/CYA_0203.faa",
    "length": 283
  },
  "protein_families": {
    "graphical_view": "/cyanobase/GCA_000013205.1/iprscan_matches/genes/CYA_0203.png",
    "table_view": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/iprscan_matches/CYA_0203"
  },
  "gene_annotations": {
    "gene_ontlogy": [
      {
        "label": "Biological Process: DNA repair (GO:0006281)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0006281"
      },
      {
        "label": "Biological Process: base-excision repair (GO:0006284)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0006284"
      },
      {
        "label": "Biological Process: nucleotide-excision repair (GO:0006289)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0006289"
      },
      {
        "label": "Molecular Function: DNA binding (GO:0003677)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0003677"
      },
      {
        "label": "Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0003906"
      },
      {
        "label": "Molecular Function: catalytic activity (GO:0003824)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0003824"
      },
      {
        "label": "Molecular Function: damaged DNA binding (GO:0003684)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0003684"
      },
      {
        "label": "Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0016799"
      },
      {
        "label": "Molecular Function: nucleic acid binding (GO:0003676)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0003676"
      },
      {
        "label": "Molecular Function: oxidized purine base lesion DNA N-glycosylase activity (GO:0008534)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0008534"
      },
      {
        "label": "Molecular Function: zinc ion binding (GO:0008270)",
        "link": "http://www.ebi.ac.uk/ego/GTerm?id=GO:0008270"
      }
    ]
  },
  "references": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/CYA_0203/references",
  "homology_search_results": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/blast_hits/CYA_0203",
  "ortholog_search_result": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/blast_hits/CYA_0203",
  "external_links": {
    "gene_annotation_databases": {
      "kegg_genes": "http://www.genome.ad.jp/dbget-bin/www_bget?:CYA_0203",
      "linkdb": "http://www.genome.jp/dbget-bin/get_linkdb?:CYA_0203",
      "gendoo": null
    },
    "3d_structure_databases": {
      "gtop": "http://spock.genes.nig.ac.jp/~genome/cgi-bin/mas.pl.cgi?org=&gene=CYA_0203"
    },
    "ortholog_paralog_cluster_databases": {
      "cog": "http://www.ncbi.nlm.nih.gov/COG/grace/blyz.cgi?cog=CYA_0203&CYA_0203",
      "mbgd": "http://mbgd.genome.ad.jp/htbin/MBGD_gene_info_frame.pl?name=:CYA_0203",
      "gclust": "http://gclust.c.u-tokyo.ac.jp/cgi-bin/search_menu_ns.cgi?DATA_SET=ALL95_4&VERSION_NO=2007-10&queryID=*CYA_0203*"
    }
  },
  "kazusa_api": {
    "permalinks": {
      "gff3": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/CYA_0203.gff3",
      "fna": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/CYA_0203.fna",
      "faa": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/CYA_0203.faa",
      "references": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/genes/CYA_0203/references"
    },
    "homology": {
      "table_view": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/blast_hits/CYA_0203",
      "gff3": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/blast_hits/CYA_0203.gff3"
    },
    "orthologs": {
      "table_view": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/orthologs/CYA_0203",
      "gff3": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/orthologs/CYA_0203.gff3"
    },
    "interproscan_matches": {
      "table_view": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/iprscan_matches/CYA_0203",
      "gff3": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/iprscan_matches/CYA_0203.gff3",
      "png": "http://genome.microbedb.jp:443/cyanobase/GCA_000013205.1/iprscan_matches/CYA_0203.png"
    }
  }
}
