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Full-text search result: 176 genes by "Transcription" TXT SET

Synechococcus sp. CC9605 (176 genes ) TXT SET

Syncc9605_2071 InterPro IPR014036 HTH transcriptional regulator, DeoR; HMMPfam:PF00455 DeoR
Syncc9605_2079 Function Transcription: Transcription
GO term Biological Process: regulation of transcription termination (GO:0031554)
GO term Molecular Function: transcription factor activity (GO:0003700)
GO term Molecular Function: transcription regulator activity (GO:0030528)
InterPro IPR010213 Transcription termination factor NusA; HMMTigr:TIGR01953 NusA
InterPro IPR013735 Transcription factor NusA, N-terminal; Gene3D:G3DSA:3.30.1480.10 TF_NusA_N
InterPro IPR013735 Transcription factor NusA, N-terminal; HMMPfam:PF08529 NusA_N
InterPro IPR013735 Transcription factor NusA, N-terminal; superfamily:SSF69705 TF_NusA_N
Blast Hits [nr] ref|ZP_05788573.1| transcription termination factor NusA [Synechococcus sp. WH 8109] gi|260412477|gb|EEX05773.1| transcription termination factor NusA [Synechococcus sp. WH 8109]
Blast Hits [sprot] NUSA_BACHD (sp|Q9KA74) Transcription elongation protein nusA OS=Bacillus halodurans GN=nusA PE=3 SV=1
Syncc9605_2104 Gene product two component transcriptional regulator, LuxR family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000792 Transcription regulator LuxR, C-terminal; FPrintScan:PR00038 HTHLUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMPfam:PF00196 GerE
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMSmart:SM00421 HTH_LUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; ProfileScan:PS50043 HTH_LUXR_2
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_05788584.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260412488|gb|EEX05784.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
Syncc9605_2284 Gene product putative transcriptional regulator
Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR001845 HTH transcriptional regulator, ArsR; HMMPfam:PF01022 HTH_5
Blast Hits [nr] ref|ZP_05789782.1| transcriptional regulator [Synechococcus sp. WH 8109] gi|260413686|gb|EEX06982.1| transcriptional regulator [Synechococcus sp. WH 8109]
Syncc9605_2378 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator | chr5:8356204-8358873 REVERSE
Blast Hits [nr] ref|ZP_05789860.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109]
Blast Hits [sprot] PHOP_BACSU (sp|P13792) Alkaline phosphatase synthesis transcriptional regulatory protein phoP OS=Bacillus subtilis GN=phoP PE=1 SV=4
Syncc9605_2384 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
Blast Hits [nr] ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109]
Blast Hits [sprot] YCF27_PORYE (sp|Q1XDC9) Probable transcriptional regulator ycf27 OS=Porphyra yezoensis GN=ycf27 PE=3 SV=2
Syncc9605_2398 Gene product putative Rubisco transcriptional regulator
Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000847 HTH transcriptional regulator, LysR; FPrintScan:PR00039 HTHLYSR
InterPro IPR000847 HTH transcriptional regulator, LysR; HMMPfam:PF00126 HTH_1
InterPro IPR000847 HTH transcriptional regulator, LysR; ProfileScan:PS50931 HTH_LYSR
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_05789613.1| transcriptional regulator, LysR family protein [Synechococcus sp. WH 8109] gi|260413517|gb|EEX06813.1| transcriptional regulator, LysR family protein [Synechococcus sp. WH 8109]
Blast Hits [sprot] RBCR_SYNY3 (sp|P73123) Probable RuBisCO transcriptional regulator OS=Synechocystis sp. (strain PCC 6803) GN=rbcR PE=3 SV=1
Syncc9605_2406 Gene product transcriptional regulator, LuxR family
Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000792 Transcription regulator LuxR, C-terminal; FPrintScan:PR00038 HTHLUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMPfam:PF00196 GerE
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMSmart:SM00421 HTH_LUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; PatternScan:PS00622 HTH_LUXR_1
InterPro IPR000792 Transcription regulator LuxR, C-terminal; ProfileScan:PS50043 HTH_LUXR_2
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G23380.1 | Symbols: CLF, ICU1, SDG1, SET1 | CLF (CURLY LEAF); transcription factor | chr2:9955570-9960117 FORWARD
Blast Hits [nr] ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
Syncc9605_2417 Gene product heat-inducible transcription repressor HrcA
Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR002571 Winged helix-turn-helix transcription repressor, HrcA; HMMPIR:PIRSF005485 HrcA
InterPro IPR002571 Winged helix-turn-helix transcription repressor, HrcA; HMMTigr:TIGR00331 hrcA
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
InterPro IPR021153 Winged helix-turn-helix transcription repressor, HrcA, C-terminal; HMMPfam:PF01628 HrcA
Blast Hits [nr] ref|ZP_05790438.1| heat-inducible transcription repressor HrcA [Synechococcus sp. WH 8109] gi|260414342|gb|EEX07638.1| heat-inducible transcription repressor HrcA [Synechococcus sp. WH 8109]
Blast Hits [sprot] HRCA_SYNPX (sp|Q7U3Z7) Heat-inducible transcription repressor hrcA OS=Synechococcus sp. (strain WH8102) GN=hrcA PE=3 SV=1
Syncc9605_2427 Gene product two component transcriptional regulator, LuxR family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000792 Transcription regulator LuxR, C-terminal; FPrintScan:PR00038 HTHLUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMPfam:PF00196 GerE
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMSmart:SM00421 HTH_LUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; ProfileScan:PS50043 HTH_LUXR_2
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT1G67710.1 | Symbols: ARR11 | ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator | chr1:25376994-25378905 REVERSE
Blast Hits [nr] ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
Blast Hits [sprot] YCF29_PORYE (sp|Q1XDE4) Probable transcriptional regulator ycf29 OS=Porphyra yezoensis GN=ycf29 PE=3 SV=1
Syncc9605_2472 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription elongation regulator activity (GO:0003711)
InterPro IPR001062 Transcription antitermination protein, NusG; FPrintScan:PR00338 NUSGTNSCPFCT
InterPro IPR001062 Transcription antitermination protein, NusG; HMMTigr:TIGR00922 nusG
InterPro IPR006645 Transcription antitermination protein, NusG, N-terminal; Gene3D:G3DSA:3.30.70.940 Transcrpt_antiterm_NusG_N
InterPro IPR006645 Transcription antitermination protein, NusG, N-terminal; HMMPfam:PF02357 NusG
InterPro IPR006645 Transcription antitermination protein, NusG, N-terminal; HMMSmart:SM00738 NGN
InterPro IPR006645 Transcription antitermination protein, NusG, N-terminal; superfamily:SSF82679 Transcrpt_antiterm_NusG_N
InterPro IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site; PatternScan:PS01014 NUSG
Blast Hits [TAIR_pep] AT3G09210.1 | Symbols: PTAC13 | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription elongation regulator | chr3:2825422-2826850 REVERSE
Blast Hits [nr] ref|ZP_05789100.1| transcription termination/antitermination factor NusG [Synechococcus sp. WH 8109] gi|260413004|gb|EEX06300.1| transcription termination/antitermination factor NusG [Synechococcus sp. WH 8109]
Blast Hits [sprot] NUSG_SYNY3 (sp|P36265) Transcription antitermination protein nusG OS=Synechocystis sp. (strain PCC 6803) GN=nusG PE=3 SV=1
Syncc9605_2514 Gene product transcriptional regulator, Crp/Fnr family
GO term Biological Process: regulation of transcription (GO:0045449)
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR001808 HTH transcriptional regulator, Crp; HMMPfam:PF00325 Crp
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_01125047.1| transcriptional regulator, Crp/Fnr family protein [Synechococcus sp. WH 7805] gi|88786758|gb|EAR17917.1| transcriptional regulator, Crp/Fnr family protein [Synechococcus sp. WH 7805]
Syncc9605_2596 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Syncc9605_2664 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Syncc9605_0083 Gene product transcriptional regulator, GntR family
Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000524 HTH transcriptional regulator, GntR; FPrintScan:PR00035 HTHGNTR
InterPro IPR000524 HTH transcriptional regulator, GntR; HMMPfam:PF00392 GntR
InterPro IPR000524 HTH transcriptional regulator, GntR; HMMSmart:SM00345 HTH_GNTR
InterPro IPR000524 HTH transcriptional regulator, GntR; ProfileScan:PS50949 HTH_GNTR
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_01468975.1| transcriptional regulator, GntR family protein [Synechococcus sp. BL107] gi|116065330|gb|EAU71088.1| transcriptional regulator, GntR family protein [Synechococcus sp. BL107]
Blast Hits [sprot] YHCF_BACSU (sp|P54590) Uncharacterized HTH-type transcriptional regulator yhcF OS=Bacillus subtilis GN=yhcF PE=4 SV=1
Syncc9605_0093 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Syncc9605_0118 InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Syncc9605_0269 Gene product transcriptional regulator, Crp/Fnr family
GO term Biological Process: regulation of transcription (GO:0045449)
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR001808 HTH transcriptional regulator, Crp; FPrintScan:PR00034 HTHCRP
InterPro IPR001808 HTH transcriptional regulator, Crp; HMMPfam:PF00325 Crp
InterPro IPR001808 HTH transcriptional regulator, Crp; HMMSmart:SM00419 HTH_CRP
InterPro IPR018335 Transcription regulator Crp-type HTH, conserved site; PatternScan:PS00042 HTH_CRP_1
Blast Hits [nr] ref|ZP_05789461.1| transcriptional regulator, Crp/Fnr family [Synechococcus sp. WH 8109] gi|260413365|gb|EEX06661.1| transcriptional regulator, Crp/Fnr family [Synechococcus sp. WH 8109]
Syncc9605_0406 InterPro IPR005149 Transcription regulator PadR N-terminal-like; HMMPfam:PF03551 PadR
Blast Hits [TAIR_pep] AT2G40670.1 | Symbols: ARR16, RR16 | ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16); transcription regulator/ two-component response regulator | chr2:16970258-16971120 FORWARD
Blast Hits [nr] ref|ZP_05789882.1| transcriptional regulator, PadR family [Synechococcus sp. WH 8109] gi|260413786|gb|EEX07082.1| transcriptional regulator, PadR family [Synechococcus sp. WH 8109]
Blast Hits [sprot] SPT6_EMENI (sp|Q5B7Q7) Transcription elongation factor spt6 OS=Emericella nidulans GN=spt6 PE=3 SV=1
Syncc9605_0479 Gene product transcriptional regulator, LuxR family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000792 Transcription regulator LuxR, C-terminal; FPrintScan:PR00038 HTHLUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMPfam:PF00196 GerE
InterPro IPR000792 Transcription regulator LuxR, C-terminal; HMMSmart:SM00421 HTH_LUXR
InterPro IPR000792 Transcription regulator LuxR, C-terminal; PatternScan:PS00622 HTH_LUXR_1
InterPro IPR000792 Transcription regulator LuxR, C-terminal; ProfileScan:PS50043 HTH_LUXR_2
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [sprot] DCTR_RHOCA (sp|P37740) C4-dicarboxylate transport transcriptional regulatory protein dctR OS=Rhodobacter capsulatus GN=dctR PE=3 SV=1
Syncc9605_0593 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator | chr5:24675540-24678176 FORWARD
Blast Hits [nr] ref|YP_377772.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78169631|gb|ABB26728.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902]
Syncc9605_0469 InterPro IPR003796 Ribonucleotide reductase regulator NrdR-like; HMMTigr:TIGR00244 TIGR00244: transcriptional regulator NrdR
Blast Hits [nr] ref|ZP_05789611.1| transcriptional regulator NrdR [Synechococcus sp. WH 8109] gi|260413515|gb|EEX06811.1| transcriptional regulator NrdR [Synechococcus sp. WH 8109]
Blast Hits [sprot] NRDR_SYNS9 (sp|Q3AWE9) Transcriptional repressor nrdR OS=Synechococcus sp. (strain CC9902) GN=nrdR PE=3 SV=1
Syncc9605_0673 InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; Gene3D:G3DSA:3.30.1360.20 Trans_pterinDh
InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; HMMPanther:PTHR12599 Trans_pterinDh
InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; HMMPfam:PF01329 Pterin_4a
InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; superfamily:SSF55248 Trans_pterinDh
Syncc9605_0681 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Syncc9605_0762 InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; Gene3D:G3DSA:3.30.1360.20 Trans_pterinDh
InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; HMMPfam:PF01329 Pterin_4a
InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; superfamily:SSF55248 Trans_pterinDh
Syncc9605_0803 InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Syncc9605_0879 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Syncc9605_0915 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G41310.1 | Symbols: ATRR3, ARR8 | ATRR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator | chr2:17222280-17223536 FORWARD
Blast Hits [nr] ref|ZP_05789416.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260413320|gb|EEX06616.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109]
Syncc9605_0929 Function Transcription: Transcription
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Syncc9605_1000 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Syncc9605_1146 Gene product putative transcriptional regulator, Crp/Fnr family
GO term Biological Process: regulation of transcription (GO:0045449)
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR001808 HTH transcriptional regulator, Crp; FPrintScan:PR00034 HTHCRP
InterPro IPR001808 HTH transcriptional regulator, Crp; HMMPfam:PF00325 Crp
InterPro IPR001808 HTH transcriptional regulator, Crp; HMMSmart:SM00419 HTH_CRP
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_05788335.1| potential phosphate regulator, Crp family transcriptional regulatory protein [Synechococcus sp. WH 8109] gi|260412239|gb|EEX05535.1| potential phosphate regulator, Crp family transcriptional regulatory protein [Synechococcus sp. WH 8109]
Syncc9605_1300 Gene product transcription-repair coupling factor
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR003711 Transcription factor CarD; HMMPfam:PF02559 CarD_TRCF
InterPro IPR004576 Transcription-repair coupling factor; HMMTigr:TIGR00580 mfd
InterPro IPR005118 Transcription-repair-coupling factor; HMMPfam:PF03461 TRCF
Blast Hits [nr] ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109] gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
Blast Hits [sprot] MFD_SYNY3 (sp|Q55750) Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1
Syncc9605_1574 Gene product putative transcriptional regulator, Crp/Fnr family
GO term Biological Process: regulation of transcription (GO:0045449)
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR001808 HTH transcriptional regulator, Crp; HMMPfam:PF00325 Crp
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_05790531.1| putative transcriptional regulator, Crp/Fnr family [Synechococcus sp. WH 8109] gi|260414435|gb|EEX07731.1| putative transcriptional regulator, Crp/Fnr family [Synechococcus sp. WH 8109]
Syncc9605_1586 Gene product HTH of cAMP family transcriptional regulator
GO term Biological Process: regulation of transcription (GO:0045449)
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR001808 HTH transcriptional regulator, Crp; HMMPfam:PF00325 Crp
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_05790377.1| HTH of cAMP family transcriptional regulator [Synechococcus sp. WH 8109] gi|260414281|gb|EEX07577.1| HTH of cAMP family transcriptional regulator [Synechococcus sp. WH 8109]
Syncc9605_1612 Gene product cell envelope-related function transcriptional attenuator common domain
Function Transcription: Transcription
InterPro IPR004474 Cell envelope-related transcriptional attenuator; HMMPfam:PF03816 LytR_cpsA_psr
InterPro IPR004474 Cell envelope-related transcriptional attenuator; HMMTigr:TIGR00350 lytR_cpsA_psr
Blast Hits [nr] ref|ZP_05788763.1| LytR-membrane bound transcriptional regulator [Synechococcus sp. WH 8109] gi|260412667|gb|EEX05963.1| LytR-membrane bound transcriptional regulator [Synechococcus sp. WH 8109]
Blast Hits [sprot] LYAT_ENTFA (sp|Q836A6) Transcriptional regulator lytR OS=Enterococcus faecalis GN=lytR PE=3 SV=1
Syncc9605_1618 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
Blast Hits [nr] ref|ZP_05790699.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109]
Blast Hits [sprot] SPHR_SYNE7 (sp|P39663) Alkaline phosphatase synthesis transcriptional regulatory protein sphR OS=Synechococcus elongatus (strain PCC 7942) GN=sphR PE=1 SV=1
Syncc9605_1641 Gene product cell envelope-related function transcriptional attenuator common domain
Function Transcription: Transcription
InterPro IPR004474 Cell envelope-related transcriptional attenuator; HMMPfam:PF03816 LytR_cpsA_psr
InterPro IPR004474 Cell envelope-related transcriptional attenuator; HMMTigr:TIGR00350 lytR_cpsA_psr
Blast Hits [nr] ref|ZP_05790548.1| possible membrane-bound transcriptional regulator [Synechococcus sp. WH 8109] gi|260414452|gb|EEX07748.1| possible membrane-bound transcriptional regulator [Synechococcus sp. WH 8109]
Syncc9605_1839 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
Blast Hits [sprot] OMPR_SHIFL (sp|P0AA21) Transcriptional regulatory protein ompR OS=Shigella flexneri GN=ompR PE=3 SV=1
Syncc9605_1847 Gene product putative transcriptional regulator, ArsR family
Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR001845 HTH transcriptional regulator, ArsR; FPrintScan:PR00778 HTHARSR
InterPro IPR001845 HTH transcriptional regulator, ArsR; HMMPfam:PF01022 HTH_5
InterPro IPR001845 HTH transcriptional regulator, ArsR; HMMSmart:SM00418 HTH_ARSR
InterPro IPR001845 HTH transcriptional regulator, ArsR; ProfileScan:PS50987 HTH_ARSR_2
InterPro IPR011991 Winged helix-turn-helix transcription repressor DNA-binding; Gene3D:G3DSA:1.10.10.10 Wing_hlx_DNA_bd
Blast Hits [nr] ref|ZP_05788404.1| transcriptional regulator, ArsR family [Synechococcus sp. WH 8109] gi|260412308|gb|EEX05604.1| transcriptional regulator, ArsR family [Synechococcus sp. WH 8109]
Syncc9605_0010 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription termination (GO:0006353)
GO term Molecular Function: transcription termination factor activity (GO:0003715)
Blast Hits [nr] ref|ZP_05790615.1| transcription antitermination factor NusB [Synechococcus sp. WH 8109] gi|260414519|gb|EEX07815.1| transcription antitermination factor NusB [Synechococcus sp. WH 8109]
Syncc9605_0038 Function Transcription: Transcription
Syncc9605_0149 Function Transcription: Transcription
Syncc9605_0353 Function Transcription: Transcription
GO term Biological Process: transcription (GO:0006350)
GO term Biological Process: transcription, DNA-dependent (GO:0006351)
Syncc9605_0384 Function Transcription: Transcription
Syncc9605_0588 Function Transcription: Transcription
Blast Hits [TAIR_pep] AT1G65260.1 | Symbols: PTAC4 | PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) | chr1:24236329-24240428 FORWARD
Syncc9605_0631 Function Transcription: Transcription
Syncc9605_0785 Function Transcription: Transcription
GO term Biological Process: transcription (GO:0006350)
Syncc9605_1025 Function Transcription: Transcription
Syncc9605_1179 Function Transcription: Transcription
GO term Biological Process: regulation of transcription (GO:0045449)
Syncc9605_1288 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
Blast Hits [TAIR_pep] AT5G13730.1 | Symbols: SIG4, SIGD | SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr5:4429132-4430744 REVERSE
Syncc9605_1314 Function Transcription: Transcription
Syncc9605_1336 Function Transcription: Transcription
Syncc9605_1348 Function Transcription: Transcription
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Biological Process: transcription initiation (GO:0006352)
GO term Molecular Function: transcription factor activity (GO:0003700)
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Syncc9605_1979 Function Transcription: Transcription
Syncc9605_2065 Function Transcription: Transcription
GO term Biological Process: transcription (GO:0006350)
Syncc9605_2066 Function Transcription: Transcription
GO term Biological Process: transcription (GO:0006350)
Syncc9605_2067 Function Transcription: Transcription
GO term Biological Process: transcription (GO:0006350)
GO term Biological Process: transcription, DNA-dependent (GO:0006351)
Blast Hits [TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE
Syncc9605_2080 Function Transcription: Transcription
Blast Hits [nr] ref|ZP_05790605.1| nucleic-acid-binding protein implicated in transcription termination [Synechococcus sp. WH 8109] gi|260414509|gb|EEX07805.1| nucleic-acid-binding protein implicated in transcription termination [Synechococcus sp. WH 8109]
Syncc9605_2308 Gene product putative transcriptional regulators
Function Transcription: Transcription
GO term Biological Process: positive regulation of transcription (GO:0045941)
GO term Molecular Function: transcription activator activity (GO:0016563)
Blast Hits [nr] ref|ZP_05788855.1| putative transcriptional regulator [Synechococcus sp. WH 8109] gi|260412759|gb|EEX06055.1| putative transcriptional regulator [Synechococcus sp. WH 8109]
Syncc9605_2520 Function Transcription: Transcription
Blast Hits [TAIR_pep] AT2G44980.1 | Symbols: | transcription regulatory protein SNF2, putative | chr2:18552440-18556669 REVERSE
Syncc9605_0109 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Blast Hits [TAIR_pep] AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator | chr2:19232874-19234901 FORWARD
Blast Hits [nr] ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109]
Blast Hits [sprot] YCF27_PORAE (sp|P28835) Probable transcriptional regulator ycf27 OS=Porphyridium aerugineum GN=ycf27 PE=3 SV=1
Syncc9605_0605 Gene product Transcriptional regulator AbrB
Blast Hits [nr] ref|ZP_05789730.1| transcriptional regulator AbrB [Synechococcus sp. WH 8109] gi|260413634|gb|EEX06930.1| transcriptional regulator AbrB [Synechococcus sp. WH 8109]
Syncc9605_0624 Gene product transcriptional regulator, XRE family
Blast Hits [nr] ref|ZP_05790417.1| transcriptional regulator, XRE family [Synechococcus sp. WH 8109] gi|260414321|gb|EEX07617.1| transcriptional regulator, XRE family [Synechococcus sp. WH 8109]
Syncc9605_0991 Gene product Transcriptional regulator AbrB
Blast Hits [TAIR_pep] AT5G58610.1 | Symbols: | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE
Syncc9605_1046 Gene product possible transcriptional regulator
Blast Hits [nr] ref|ZP_05790760.1| putative transcriptional regulator [Synechococcus sp. WH 8109] gi|260414664|gb|EEX07960.1| putative transcriptional regulator [Synechococcus sp. WH 8109]
Syncc9605_1432 Gene product putative transcriptional regulator
Syncc9605_1663 Gene product two component transcriptional regulator, winged helix family
GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Blast Hits [TAIR_pep] AT5G58080.1 | Symbols: ARR18 | ARR18 (ARABIDOPSIS RESPONSE REGULATOR 18); transcription factor/ two-component response regulator | chr5:23501785-23504099 REVERSE
Blast Hits [nr] ref|ZP_05788419.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260412323|gb|EEX05619.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109]
Blast Hits [sprot] PHOP_SALTI (sp|Q8Z7H2) Virulence transcriptional regulatory protein phoP OS=Salmonella typhi GN=phoP PE=3 SV=1
Syncc9605_0594 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Blast Hits [TAIR_pep] AT2G25180.1 | Symbols: ARR12 | ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator | chr2:10724490-10726961 REVERSE
Syncc9605_0804 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Syncc9605_1153 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Syncc9605_1276 GO term Biological Process: regulation of transcription (GO:0045449)
Syncc9605_1536 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Syncc9605_1775 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
Blast Hits [TAIR_pep] AT4G29940.1 | Symbols: PRHA | PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); protein binding / sequence-specific DNA binding / transcription activator/ transcription factor | chr4:14648346-14652710 REVERSE
Syncc9605_1875 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
Syncc9605_2124 GO term Biological Process: regulation of transcription (GO:0045449)
Syncc9605_2158 GO term Biological Process: transcription, DNA-dependent (GO:0006351)
Syncc9605_2288 GO term Biological Process: transcription termination (GO:0006353)
GO term Molecular Function: transcription termination factor activity (GO:0003715)
Blast Hits [sprot] RHO_THEMA (sp|P38527) Transcription termination factor rho OS=Thermotoga maritima GN=rho PE=3 SV=2
Syncc9605_2565 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor binding (GO:0008134)
Syncc9605_2566 GO term Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO term Molecular Function: transcription factor activity (GO:0003700)
Syncc9605_1525 Blast Hits [nr] ref|ZP_05789437.1| transcriptional regulator AbrB [Synechococcus sp. WH 8109] gi|260413341|gb|EEX06637.1| transcriptional regulator AbrB [Synechococcus sp. WH 8109]
Syncc9605_2495 Blast Hits [nr] ref|YP_731952.1| transcriptional regulator [Synechococcus sp. CC9311] gi|113955397|ref|YP_731945.1| transcriptional regulator [Synechococcus sp. CC9311] gi|113880451|gb|ABI45409.1| transcriptional regulator [Synechococcus sp. CC9311] gi|113882748|gb|ABI47706.1| transcriptional regulator [Synechococcus sp. CC9311]
Syncc9605_2544 Blast Hits [nr] ref|ZP_01469200.1| transcriptional regulator, AraC family protein [Synechococcus sp. BL107] gi|116065555|gb|EAU71313.1| transcriptional regulator, AraC family protein [Synechococcus sp. BL107]
Syncc9605_0008 Blast Hits [sprot] MED8_MOUSE (sp|Q9D7W5) Mediator of RNA polymerase II transcription subunit 8 OS=Mus musculus GN=Med8 PE=2 SV=1
Syncc9605_0529 Blast Hits [sprot] YWHA_BACSU (sp|P70993) Uncharacterized HTH-type transcriptional regulator ywhA OS=Bacillus subtilis GN=ywhA PE=4 SV=1
Syncc9605_0619 Blast Hits [sprot] RRN3_MOUSE (sp|B2RS91) RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1
Syncc9605_0662 Blast Hits [sprot] CCR4_ASHGO (sp|Q75BI3) Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ashbya gossypii GN=CCR4 PE=3 SV=1
Syncc9605_0931 Blast Hits [sprot] SGRR_YERPP (sp|A4TQA7) HTH-type transcriptional regulator sgrR OS=Yersinia pestis (strain Pestoides F) GN=sgrR PE=3 SV=1
Syncc9605_1220 Blast Hits [sprot] ACE1_TRIRE (sp|Q9P8W3) Zinc finger transcription factor ace1 OS=Trichoderma reesei GN=ace1 PE=4 SV=1
Syncc9605_1234 Blast Hits [sprot] MALT_PHOLL (sp|Q7N976) HTH-type transcriptional regulator malT OS=Photorhabdus luminescens subsp. laumondii GN=malT PE=3 SV=1
Syncc9605_1557 Blast Hits [sprot] TCF15_MOUSE (sp|Q60756) Transcription factor 15 OS=Mus musculus GN=Tcf15 PE=1 SV=2
Syncc9605_1563 Blast Hits [sprot] PACC_SCLSC (sp|Q9P413) pH-response transcription factor pacC/RIM101 OS=Sclerotinia sclerotiorum GN=pac1 PE=2 SV=1
Syncc9605_1615 Blast Hits [TAIR_pep] AT3G24500.1 | Symbols: MBF1C, ATMBF1C | MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor | chr3:8918755-8919201 FORWARD
Blast Hits [sprot] Y023_MYCTU (sp|P67704) Uncharacterized HTH-type transcriptional regulator Rv0023/MT0026 OS=Mycobacterium tuberculosis GN=Rv0023 PE=4 SV=1
Syncc9605_1727 Blast Hits [sprot] YCBG_BACSU (sp|P42239) Uncharacterized HTH-type transcriptional regulator ycbG OS=Bacillus subtilis GN=ycbG PE=4 SV=2
Syncc9605_1758 Blast Hits [sprot] SPT6_EMENI (sp|Q5B7Q7) Transcription elongation factor spt6 OS=Emericella nidulans GN=spt6 PE=3 SV=1
Syncc9605_1885 Blast Hits [sprot] CARR_PECCC (sp|Q46751) Transcriptional activator protein carR OS=Pectobacterium carotovorum subsp. carotovorum GN=carR PE=3 SV=1
Syncc9605_1910 Blast Hits [sprot] BH066_ARATH (sp|Q9ZUG9) Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1
Syncc9605_1911 Blast Hits [sprot] TF2B_ARCFU (sp|O28970) Transcription initiation factor IIB OS=Archaeoglobus fulgidus GN=tfb PE=3 SV=1
Syncc9605_2040 Blast Hits [sprot] ADA2_SCHPO (sp|Q9P7J7) Transcriptional adapter 2 OS=Schizosaccharomyces pombe GN=ada2 PE=1 SV=1
Syncc9605_2161 Blast Hits [sprot] RFX3_DANRE (sp|A0JMF8) Transcription factor RFX3 OS=Danio rerio GN=rfx3 PE=2 SV=1
Syncc9605_2658 Blast Hits [sprot] MED7_CAEEL (sp|Q95Q17) Mediator of RNA polymerase II transcription subunit 7 OS=Caenorhabditis elegans GN=let-49 PE=1 SV=1
Syncc9605_0426 Blast Hits [pln_est] gb|BY815186|BY815186 BY815186 RTFL1 Thellungiella halophila cDNA clone RTFL01-22-N10 3' similar to NM_117737.3 Arabidopsis thaliana transcriptional adaptor (ADA2b) (At4g16420) mRNA, mRNA sequence.
Syncc9605_0095 Blast Hits [TAIR_pep] AT1G67120.1 | Symbols: | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding | chr1:25069727-25095526 REVERSE
Syncc9605_0205 Blast Hits [TAIR_pep] ATCG00420.1 | Symbols: NDHJ | Encodes NADH dehydrogenase subunit J. Its transcription is increased upon sulfur depletion. | chrC:48677-49153 REVERSE
Syncc9605_0259 Blast Hits [TAIR_pep] AT3G61150.1 | Symbols: HDG1, HD-GL2-1 | HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor | chr3:22630769-22634875 FORWARD
Syncc9605_0276 Blast Hits [TAIR_pep] AT1G30490.1 | Symbols: PHV, ATHB9 | PHV (PHAVOLUTA); DNA binding / protein binding / transcription factor | chr1:10796328-10800744 REVERSE
Syncc9605_0306 Blast Hits [TAIR_pep] AT4G13640.1 | Symbols: UNE16 | UNE16 (unfertilized embryo sac 16); transcription factor | chr4:7936864-7938497 REVERSE
Syncc9605_0334 Blast Hits [TAIR_pep] AT2G26950.1 | Symbols: AtMYB104 | AtMYB104 (myb domain protein 104); DNA binding / transcription factor | chr2:11500721-11502073 REVERSE
Syncc9605_0488 Blast Hits [TAIR_pep] AT2G24500.1 | Symbols: FZF | FZF; transcription factor | chr2:10401259-10402805 REVERSE
Syncc9605_0517 Blast Hits [TAIR_pep] AT3G09360.1 | Symbols: | RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding | chr3:2873796-2878432 FORWARD
Syncc9605_0627 Blast Hits [TAIR_pep] ATCG00540.1 | Symbols: PETA | Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2. | chrC:61657-62619 FORWARD
Syncc9605_0637 Blast Hits [TAIR_pep] AT1G67120.1 | Symbols: | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding | chr1:25069727-25095526 REVERSE
Syncc9605_0706 Blast Hits [TAIR_pep] AT3G23240.1 | Symbols: ERF1, ATERF1 | ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor | chr3:8295705-8296361 FORWARD
Syncc9605_0727 Blast Hits [TAIR_pep] AT1G67120.1 | Symbols: | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding | chr1:25069727-25095526 REVERSE
Syncc9605_0747 Blast Hits [TAIR_pep] AT1G16750.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G13000.2); Has 420 Blast hits to 403 proteins in 70 species: Archae - 0; Bacteria - 56; Metazoa - 34; Fungi - 2; Plants - 297; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr1:5729221-5731689 REVERSE
Syncc9605_0757 Blast Hits [TAIR_pep] AT1G06450.1 | Symbols: | CCR4-NOT transcription complex protein, putative | chr1:1965924-1967006 FORWARD
Syncc9605_0835 Blast Hits [TAIR_pep] AT5G11510.1 | Symbols: MYB3R-4, AtMYB3R4 | MYB3R-4 (myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor | chr5:3680452-3684684 FORWARD
Syncc9605_0916 Blast Hits [TAIR_pep] AT2G16400.1 | Symbols: BLH7 | BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor | chr2:7101490-7103200 REVERSE
Syncc9605_0934 Blast Hits [TAIR_pep] AT3G05690.1 | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2); transcription factor | chr3:1676922-1678324 REVERSE
Syncc9605_0951 Blast Hits [TAIR_pep] AT5G22290.1 | Symbols: anac089 | anac089 (Arabidopsis NAC domain containing protein 89); transcription factor | chr5:7376044-7377498 REVERSE
Syncc9605_0973 Blast Hits [TAIR_pep] AT2G16910.1 | Symbols: AMS | AMS (ABORTED MICROSPORES); DNA binding / transcription factor | chr2:7331721-7334077 FORWARD
Syncc9605_1033 Blast Hits [TAIR_pep] AT4G02020.1 | Symbols: EZA1, SWN, SDG10 | SWN (SWINGER); transcription factor | chr4:886693-891743 FORWARD
Syncc9605_1050 Blast Hits [TAIR_pep] AT3G14980.1 | Symbols: | PHD finger transcription factor, putative | chr3:5039931-5044811 REVERSE
Syncc9605_1075 Blast Hits [TAIR_pep] AT5G23150.1 | Symbols: HUA2 | HUA2 (ENHANCER OF AG-4 2); transcription factor | chr5:7786173-7792080 FORWARD
Syncc9605_1081 Blast Hits [TAIR_pep] AT5G09850.1 | Symbols: | transcription elongation factor-related | chr5:3063488-3065221 REVERSE
Syncc9605_1107 Blast Hits [TAIR_pep] AT1G28420.1 | Symbols: HB-1 | HB-1 (homeobox-1); transcription factor | chr1:9979936-9987460 FORWARD
Syncc9605_1142 Blast Hits [TAIR_pep] AT3G13960.1 | Symbols: AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR 5); transcription activator | chr3:4608526-4610160 FORWARD
Syncc9605_1156 Blast Hits [TAIR_pep] AT3G20740.1 | Symbols: FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator | chr3:7249064-7252254 REVERSE
Syncc9605_1171 Blast Hits [TAIR_pep] AT3G29035.1 | Symbols: ATNAC3, ANAC059 | ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3); protein heterodimerization/ transcription factor | chr3:11033839-11035006 FORWARD
Syncc9605_1173 Blast Hits [TAIR_pep] AT1G30810.1 | Symbols: | transcription factor | chr1:10938139-10941505 REVERSE
Syncc9605_1242 Blast Hits [TAIR_pep] AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor | chr3:10784954-10788498 FORWARD
Syncc9605_1258 Blast Hits [TAIR_pep] AT4G18810.1 | Symbols: | binding / catalytic/ transcription repressor | chr4:10322622-10325735 REVERSE
Syncc9605_1264 Blast Hits [TAIR_pep] AT1G80480.1 | Symbols: PTAC17 | PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) | chr1:30258272-30260570 REVERSE
Syncc9605_1297 Blast Hits [TAIR_pep] AT2G36400.1 | Symbols: AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR 3); transcription activator | chr2:15270300-15272617 REVERSE
Syncc9605_1354 Blast Hits [TAIR_pep] AT4G13670.1 | Symbols: PTAC5 | PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5); heat shock protein binding / unfolded protein binding | chr4:7948644-7950779 FORWARD
Syncc9605_1362 Blast Hits [TAIR_pep] AT1G08620.1 | Symbols: | transcription factor | chr1:2737554-2743370 FORWARD
Syncc9605_1393 Blast Hits [TAIR_pep] AT1G68670.1 | Symbols: | myb family transcription factor | chr1:25782344-25783873 FORWARD
Syncc9605_1469 Blast Hits [TAIR_pep] AT4G18390.2 | Symbols: | TCP family transcription factor, putative | chr4:10163212-10164309 REVERSE
Syncc9605_1477 Blast Hits [TAIR_pep] AT4G17600.1 | Symbols: LIL3:1 | LIL3:1; transcription factor | chr4:9803759-9804714 FORWARD
Syncc9605_1488 Blast Hits [TAIR_pep] AT2G28700.1 | Symbols: AGL46 | AGL46 (AGAMOUS-LIKE 46); DNA binding / transcription factor | chr2:12317384-12318724 REVERSE
Syncc9605_1505 Blast Hits [TAIR_pep] AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor | chr1:465933-467685 REVERSE
Syncc9605_1522 Blast Hits [TAIR_pep] AT2G24650.1 | Symbols: | DNA binding / transcription factor | chr2:10480728-10487571 REVERSE
Syncc9605_1538 Blast Hits [TAIR_pep] AT1G12860.1 | Symbols: SCRM2, ICE2 | SCRM2 (SCREAM 2); DNA binding / transcription factor | chr1:4382223-4386392 FORWARD
Syncc9605_1544 Blast Hits [TAIR_pep] AT4G14770.1 | Symbols: TCX2, ATTCX2 | TCX2 (TESMIN/TSO1-LIKE CXC 2); transcription factor | chr4:8481522-8484825 REVERSE
Syncc9605_1591 Blast Hits [TAIR_pep] AT5G41315.1 | Symbols: GL3, MYC6.2 | GL3 (GLABROUS 3); protein binding / transcription factor | chr5:16529457-16532866 FORWARD
Syncc9605_1600 Blast Hits [TAIR_pep] AT3G22170.2 | Symbols: FHY3 | FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor | chr3:7822359-7825414 REVERSE
Syncc9605_1624 Blast Hits [TAIR_pep] AT1G07520.1 | Symbols: | scarecrow transcription factor family protein | chr1:2309718-2311805 REVERSE
Syncc9605_1634 Blast Hits [TAIR_pep] AT4G32980.1 | Symbols: ATH1 | ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1); DNA binding / sequence-specific DNA binding / transcription factor | chr4:15914865-15916873 REVERSE
Syncc9605_1694 Blast Hits [TAIR_pep] AT2G42400.1 | Symbols: VOZ2, ATVOZ2 | VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2); transcription activator | chr2:17654490-17656281 REVERSE
Syncc9605_1736 Blast Hits [TAIR_pep] AT1G74650.1 | Symbols: ATY13, ATMYB31, MYB31 | MYB31 (MYB DOMAIN PROTEIN 31); DNA binding / transcription factor | chr1:28041493-28042773 FORWARD
Syncc9605_1756 Blast Hits [TAIR_pep] AT4G17600.1 | Symbols: LIL3:1 | LIL3:1; transcription factor | chr4:9803759-9804714 FORWARD
Syncc9605_1763 Blast Hits [TAIR_pep] AT3G04930.1 | Symbols: | transcription regulator | chr3:1363029-1364399 FORWARD
Syncc9605_1842 Blast Hits [TAIR_pep] AT2G43140.1 | Symbols: | DNA binding / transcription factor | chr2:17932376-17935639 REVERSE
Syncc9605_1956 Blast Hits [TAIR_pep] AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator | chr4:13382456-13383571 REVERSE
Syncc9605_2010 Blast Hits [TAIR_pep] AT4G16150.1 | Symbols: | calmodulin binding / transcription regulator | chr4:9148225-9153048 FORWARD
Syncc9605_2033 Blast Hits [TAIR_pep] AT5G63080.1 | Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr5:25300026-25302321 REVERSE
Syncc9605_2046 Blast Hits [TAIR_pep] AT4G39780.1 | Symbols: | AP2 domain-containing transcription factor, putative | chr4:18458216-18459034 REVERSE
Syncc9605_2133 Blast Hits [TAIR_pep] AT5G11530.1 | Symbols: EMF1 | EMF1 (embryonic flower 1); transcription regulator | chr5:3697140-3700930 FORWARD
Syncc9605_2140 Blast Hits [TAIR_pep] AT2G24570.1 | Symbols: WRKY17, ATWRKY17 | WRKY17; calmodulin binding / transcription factor | chr2:10437676-10439222 REVERSE
Syncc9605_2141 Blast Hits [TAIR_pep] AT4G04450.1 | Symbols: WRKY42, AtWRKY42 | WRKY42; transcription factor | chr4:2218379-2221113 FORWARD
Syncc9605_2230 Blast Hits [TAIR_pep] AT2G36270.1 | Symbols: ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor | chr2:15204980-15206571 REVERSE
Syncc9605_2332 Blast Hits [TAIR_pep] AT1G65910.1 | Symbols: anac028 | anac028 (Arabidopsis NAC domain containing protein 28); transcription factor | chr1:24520933-24524108 REVERSE
Syncc9605_2339 Blast Hits [TAIR_pep] AT2G35110.2 | Symbols: GRL, NAP1, NAPP | GRL (GNARLED); transcription activator | chr2:14795970-14803525 REVERSE
Syncc9605_2368 Blast Hits [TAIR_pep] AT1G22985.1 | Symbols: | AP2 domain-containing transcription factor, putative | chr1:8135346-8135825 REVERSE
Syncc9605_2397 Blast Hits [TAIR_pep] AT2G17390.1 | Symbols: AKR2B | AKR2B (ANKYRIN REPEAT-CONTAINING 2B); protein binding / transcription regulator | chr2:7555870-7557743 FORWARD
Syncc9605_2432 Blast Hits [TAIR_pep] ATCG01110.1 | Symbols: NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. | chrC:122011-123192 REVERSE
Syncc9605_2443 Blast Hits [TAIR_pep] AT3G48160.1 | Symbols: DEL1, E2L3, E2FE | DEL1 (DP-E2F-LIKE 1); DNA binding / transcription factor | chr3:17783641-17785688 FORWARD
Syncc9605_2460 Blast Hits [TAIR_pep] AT5G67480.1 | Symbols: BT4, ATBT4 | BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator | chr5:26931055-26932496 REVERSE
Syncc9605_2492 Blast Hits [TAIR_pep] AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor | chr2:15119688-15122893 FORWARD
Syncc9605_2493 Blast Hits [TAIR_pep] AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor | chr2:15119688-15122893 FORWARD
Syncc9605_2509 Blast Hits [TAIR_pep] AT3G13840.1 | Symbols: | scarecrow transcription factor family protein | chr3:4555305-4556837 REVERSE
Syncc9605_2571 Blast Hits [TAIR_pep] AT1G55750.1 | Symbols: | transcription factor-related | chr1:20840449-20845135 REVERSE
Syncc9605_2574 Blast Hits [TAIR_pep] AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor | chr5:24308558-24312187 REVERSE
Syncc9605_2586 Blast Hits [TAIR_pep] AT4G31920.1 | Symbols: ARR10 | ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator | chr4:15444290-15446766 REVERSE
Syncc9605_2623 Blast Hits [TAIR_pep] AT3G29035.1 | Symbols: ATNAC3, ANAC059 | ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3); protein heterodimerization/ transcription factor | chr3:11033839-11035006 FORWARD
Syncc9605_2638 Blast Hits [TAIR_pep] AT5G18680.1 | Symbols: AtTLP11 | AtTLP11 (TUBBY LIKE PROTEIN 11); phosphoric diester hydrolase/ transcription factor | chr5:6228358-6230426 REVERSE
Syncc9605_2661 Blast Hits [TAIR_pep] AT3G03260.1 | Symbols: HDG8 | HDG8 (HOMEODOMAIN GLABROUS 8); DNA binding / transcription factor | chr3:755356-759234 REVERSE

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ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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