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Full-text search result: 33 genes by "RPE" TXT SET

Synechococcus sp. CC9605 (33 genes ) TXT SET

Syncc9605_2394 InterPro IPR008949 Terpenoid synthase; Gene3D:G3DSA:1.10.600.10 Terpenoid_synth
InterPro IPR008949 Terpenoid synthase; superfamily:SSF48576 Terpenoid_synth
Syncc9605_2439 InterPro IPR005801 ADC synthase; Gene3D:G3DSA:3.60.120.10 TRPE_1_chor_bd
InterPro IPR005801 ADC synthase; HMMPanther:PTHR11236 TRPE_1_chor_bd
InterPro IPR005801 ADC synthase; superfamily:SSF56322 TRPE_1_chor_bd
Syncc9605_2603 InterPro IPR005801 ADC synthase; Gene3D:G3DSA:3.60.120.10 TRPE_1_chor_bd
InterPro IPR005801 ADC synthase; HMMPanther:PTHR11236 TRPE_1_chor_bd
InterPro IPR005801 ADC synthase; superfamily:SSF56322 TRPE_1_chor_bd
Syncc9605_0023 Gene product putative heat shock protein GrpE
InterPro IPR000740 GrpE nucleotide exchange factor; FPrintScan:PR00773 GRPEPROTEIN
InterPro IPR000740 GrpE nucleotide exchange factor; HMMPanther:PTHR21237 GrpE
InterPro IPR000740 GrpE nucleotide exchange factor; HMMPfam:PF01025 GrpE
InterPro IPR000740 GrpE nucleotide exchange factor; PatternScan:PS01071 GRPE
InterPro IPR009012 GrpE nucleotide exchange factor, head; Gene3D:G3DSA:2.30.22.10 GrpE_head
InterPro IPR009012 GrpE nucleotide exchange factor, head; superfamily:SSF51064 GrpE_head
InterPro IPR013805 GrpE nucleotide exchange factor, coiled-coil; Gene3D:G3DSA:3.90.20.20 GrpE_coiled_coil
Blast Hits [nr] ref|ZP_05789518.1| co-chaperone GrpE [Synechococcus sp. WH 8109] gi|260413422|gb|EEX06718.1| co-chaperone GrpE [Synechococcus sp. WH 8109]
Blast Hits [sprot] GRPE_SYNS9 (sp|Q3B0Y4) Protein grpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1
Syncc9605_0221 InterPro IPR004294 Carotenoid oxygenase; HMMPfam:PF03055 RPE65
Syncc9605_0398 InterPro IPR005801 ADC synthase; Gene3D:G3DSA:3.60.120.10 TRPE_1_chor_bd
InterPro IPR005801 ADC synthase; HMMPanther:PTHR11236 TRPE_1_chor_bd
InterPro IPR005801 ADC synthase; superfamily:SSF56322 TRPE_1_chor_bd
Blast Hits [sprot] TRPE_SYNY3 (sp|P20170) Probable anthranilate synthase component 1 OS=Synechocystis sp. (strain PCC 6803) GN=trpE PE=3 SV=2
Syncc9605_1137 InterPro IPR008949 Terpenoid synthase; Gene3D:G3DSA:1.10.600.10 Terpenoid_synth
InterPro IPR008949 Terpenoid synthase; superfamily:SSF48576 Terpenoid_synth
Syncc9605_1252 InterPro IPR000056 Ribulose-phosphate 3-epimerase; HMMTigr:TIGR01163 rpe
Blast Hits [TAIR_pep] AT5G61410.2 | Symbols: RPE | RPE; catalytic/ ribulose-phosphate 3-epimerase | chr5:24684085-24685836 REVERSE
Blast Hits [sprot] RPE_SYNY3 (sp|P74061) Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3
Syncc9605_1926 InterPro IPR008949 Terpenoid synthase; Gene3D:G3DSA:1.10.600.10 Terpenoid_synth
InterPro IPR008949 Terpenoid synthase; superfamily:SSF48576 Terpenoid_synth
Syncc9605_0890 GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
Syncc9605_1188 GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
Syncc9605_1298 GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
Syncc9605_1430 GO term Biological Process: terpenoid biosynthetic process (GO:0016114)
Syncc9605_0047 Blast Hits [sprot] UBIG_BORPE (sp|Q7VZG7) 3-demethylubiquinone-9 3-methyltransferase OS=Bordetella pertussis GN=ubiG PE=3 SV=1
Syncc9605_0180 Blast Hits [sprot] KDSB_CHLT3 (sp|B3QTV9) 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=kdsB PE=3 SV=1
Syncc9605_0611 Blast Hits [sprot] DRRA_STRPE (sp|P32010) Daunorubicin/doxorubicin resistance ATP-binding protein drrA OS=Streptomyces peucetius GN=drrA PE=1 SV=1
Syncc9605_0638 Blast Hits [sprot] WECB_YERPE (sp|Q8ZAE3) UDP-N-acetylglucosamine 2-epimerase OS=Yersinia pestis GN=wecB PE=3 SV=1
Syncc9605_1488 Blast Hits [sprot] YFEA_YERPE (sp|Q56952) Periplasmic chelated iron-binding protein yfeA OS=Yersinia pestis GN=yfeA PE=3 SV=2
Syncc9605_1654 Blast Hits [sprot] PRPE_BACCN (sp|A7GM94) Bis(5'-nucleosyl)-tetraphosphatase prpE [asymmetrical] OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=prpE PE=3 SV=1
Syncc9605_1675 Blast Hits [sprot] RPE_ASHGO (sp|Q755M2) Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1
Syncc9605_1784 Blast Hits [pln_est] gb|BQ764693|BQ764693 EBca01_SQ004_J16_R carpel, pre-anthesis, no treatment, cv Optic, EBca01 Hordeum vulgare subsp. vulgare cDNA clone EBca01_SQ004_J16 5', mRNA sequence.
Blast Hits [sprot] VG02_ICHV1 (sp|Q00126) Uncharacterized protein ORF2 OS=Ictalurid herpesvirus 1 GN=ORF2 PE=4 SV=1
Syncc9605_2166 Blast Hits [sprot] TERL_SHV21 (sp|Q01020) Large terminase protein OS=Saimiriine herpesvirus 2 (strain 11) GN=29 PE=3 SV=1
Syncc9605_2526 Blast Hits [sprot] CYAD_BORPE (sp|P11091) Protein cyaD OS=Bordetella pertussis GN=cyaD PE=3 SV=3
Syncc9605_0731 Blast Hits [pln_est] emb|AM722886|AM722886 AM722886 Cucumis melo subsp. melo Piel de Sapo Pinyonet torpedo root 15 days after pollination infected with M. cannonballus Cucumis melo subsp. melo cDNA, mRNA sequence.
Syncc9605_1696 Blast Hits [pln_est] dbj|EE634975|EE634975 CHEL582.b1_K02.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHEL582, mRNA sequence.
Syncc9605_1857 Blast Hits [pln_est] dbj|EE643175|EE643175 CHEM3074.b1_C01.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHEM3074, mRNA sequence.
Syncc9605_2372 Blast Hits [pln_est] dbj|EE641102|EE641102 CHEM12193.b1_B02.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHEM12193, mRNA sequence.
Syncc9605_0059 Blast Hits [TAIR_pep] AT1G24010.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, guard cell, pedicel, root, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT1G24000.1); Has 23 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8498960-8499464 REVERSE
Syncc9605_0555 Blast Hits [TAIR_pep] AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase | chr2:16715089-16723406 FORWARD
Syncc9605_0837 Blast Hits [TAIR_pep] AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase | chr3:8567971-8573819 REVERSE
Syncc9605_1016 Blast Hits [TAIR_pep] AT4G33360.1 | Symbols: | terpene cyclase/mutase-related | chr4:16067989-16069374 REVERSE
Syncc9605_1569 Blast Hits [TAIR_pep] AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase | chr3:8567971-8573819 REVERSE
Syncc9605_2340 Blast Hits [TAIR_pep] AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization | chr2:6733661-6735482 FORWARD

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
Table of contents (33)
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