in ?
cyanobase » Synechococcus sp. CC9605 » genes » search

Full-text search result: 46 genes by "AMP" TXT SET

Synechococcus sp. CC9605 (46 genes ) TXT SET

Syncc9605_2011 InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
InterPro IPR020845 AMP-binding, conserved site; PatternScan:PS00455 AMP_BINDING
Blast Hits [TAIR_pep] AT3G23790.1 | Symbols: | AMP-binding protein, putative | chr3:8575268-8581001 FORWARD
Syncc9605_2123 InterPro IPR003660 HAMP linker domain; HMMPfam:PF00672 HAMP
InterPro IPR003660 HAMP linker domain; HMMSmart:SM00304 HAMP
InterPro IPR003660 HAMP linker domain; ProfileScan:PS50885 HAMP
Syncc9605_2176 InterPro IPR007865 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; HMMPfam:PF05195 AMP_N
Blast Hits [sprot] AMPP_HAEIN (sp|P44881) Xaa-Pro aminopeptidase OS=Haemophilus influenzae GN=pepP PE=3 SV=1
Syncc9605_2302 Gene product Hydrophobe/amphiphile efflux-1 HAE1
InterPro IPR004764 Hydrophobe/amphiphile efflux-1 HAE1; HMMTigr:TIGR00915 2A0602
Syncc9605_2436 InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
Blast Hits [TAIR_pep] AT1G77240.1 | Symbols: | AMP-binding protein, putative | chr1:29017958-29019595 REVERSE
Syncc9605_2529 InterPro IPR001046 Natural resistance-associated macrophage protein; HMMPfam:PF01566 Nramp
Blast Hits [TAIR_pep] AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter | chr5:26861822-26863580 FORWARD
Syncc9605_0062 InterPro IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal; superfamily:SSF48019 Pol_clamp_load_C
Syncc9605_0072 InterPro IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal; superfamily:SSF48019 Pol_clamp_load_C
Syncc9605_0078 InterPro IPR007861 DNA mismatch repair protein MutS, clamp; HMMPfam:PF05190 MutS_IV
Syncc9605_0089 InterPro IPR003691 Camphor resistance CrcB protein; HMMPfam:PF02537 CRCB
Blast Hits [TAIR_pep] AT2G41705.2 | Symbols: | camphor resistance CrcB family protein | chr2:17398083-17399910 FORWARD
Syncc9605_0090 InterPro IPR003691 Camphor resistance CrcB protein; HMMPfam:PF02537 CRCB
Syncc9605_1004 GO term Molecular Function: phosphoribosyl-AMP cyclohydrolase activity (GO:0004635)
InterPro IPR002496 Phosphoribosyl-AMP cyclohydrolase; BlastProDom:PD002610 PRA_CycHdrlase
InterPro IPR002496 Phosphoribosyl-AMP cyclohydrolase; HMMPfam:PF01502 PRA-CH
Blast Hits [TAIR_pep] AT1G31860.1 | Symbols: AT-IE, HISN2 | AT-IE; phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP diphosphatase | chr1:11434250-11436530 REVERSE
Syncc9605_1139 GO term Molecular Function: AMP binding (GO:0016208)
InterPro IPR000873 AMP-dependent synthetase/ligase; HMMPfam:PF00501 AMP-binding
InterPro IPR020845 AMP-binding, conserved site; PatternScan:PS00455 AMP_BINDING
Syncc9605_1840 InterPro IPR003660 HAMP linker domain; HMMPfam:PF00672 HAMP
InterPro IPR003660 HAMP linker domain; HMMSmart:SM00304 HAMP
InterPro IPR003660 HAMP linker domain; ProfileScan:PS50885 HAMP
Syncc9605_1586 Gene product HTH of cAMP family transcriptional regulator
Blast Hits [nr] ref|ZP_05790377.1| HTH of cAMP family transcriptional regulator [Synechococcus sp. WH 8109] gi|260414281|gb|EEX07577.1| HTH of cAMP family transcriptional regulator [Synechococcus sp. WH 8109]
Syncc9605_1913 Gene product possible cAMP phosphodiesterases class-II
Blast Hits [nr] ref|ZP_05790403.1| putative cAMP phosphodiesterase class-II [Synechococcus sp. WH 8109] gi|260414307|gb|EEX07603.1| putative cAMP phosphodiesterase class-II [Synechococcus sp. WH 8109]
Syncc9605_2209 GO term Molecular Function: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (GO:0004018)
Syncc9605_2407 GO term Biological Process: cAMP biosynthetic process (GO:0006171)
Syncc9605_0336 Blast Hits [nr] ref|ZP_05789855.1| multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 [Synechococcus sp. WH 8109] gi|260413759|gb|EEX07055.1| multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 [Synechococcus sp. WH 8109]
Syncc9605_0357 Blast Hits [nr] ref|ZP_05788453.1| adenylate kinase (ATP-AMP transphosphorylase) [Synechococcus sp. WH 8109] gi|260412357|gb|EEX05653.1| adenylate kinase (ATP-AMP transphosphorylase) [Synechococcus sp. WH 8109]
Syncc9605_1673 Blast Hits [nr] ref|YP_002911993.1| Histidine kinase, HAMP region [Burkholderia glumae BGR1] gi|237876956|gb|ACR29289.1| Histidine kinase, HAMP region [Burkholderia glumae BGR1]
Syncc9605_1905 Blast Hits [nr] ref|NP_875961.1| Beta-lactamase class C and other penicillin binding proteins [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238548|gb|AAQ00614.1| AmpC [Prochlorococcus marinus subsp. marinus str. CCMP1375]
Syncc9605_0129 Blast Hits [sprot] XANB_XANCP (sp|P0C7J3) Xanthan biosynthesis protein xanB OS=Xanthomonas campestris pv. campestris GN=xanB PE=3 SV=1
Syncc9605_0531 Blast Hits [sprot] CAMP1_MOUSE (sp|A2AHC3) Calmodulin-regulated spectrin-associated protein 1 OS=Mus musculus GN=Camsap1 PE=1 SV=1
Syncc9605_0645 Blast Hits [sprot] AMPM3_SYNY3 (sp|P53581) Putative methionine aminopeptidase C OS=Synechocystis sp. (strain PCC 6803) GN=sll0555 PE=3 SV=1
Syncc9605_1105 Blast Hits [sprot] AAKG3_HUMAN (sp|Q9UGI9) 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=2 SV=3
Syncc9605_1171 Blast Hits [sprot] PEB1A_CAMJE (sp|Q0P9X8) Major cell-binding factor OS=Campylobacter jejuni GN=peb1A PE=1 SV=1
Syncc9605_1274 Blast Hits [sprot] TRMA_CAMLR (sp|B9KCK3) tRNA (uracil-5-)-methyltransferase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=trmA PE=3 SV=1
Syncc9605_1385 Blast Hits [sprot] AMPD_CITFR (sp|P82974) 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Citrobacter freundii GN=ampD PE=1 SV=1
Syncc9605_1520 Blast Hits [sprot] AAKG3_MOUSE (sp|Q8BGM7) 5'-AMP-activated protein kinase subunit gamma-3 OS=Mus musculus GN=Prkag3 PE=2 SV=1
Syncc9605_1546 Blast Hits [sprot] OTC_CAMC1 (sp|A7ZCL8) Ornithine carbamoyltransferase OS=Campylobacter concisus (strain 13826) GN=arcB PE=3 SV=1
Syncc9605_1912 Blast Hits [sprot] AMPN_CAUCR (sp|P37893) Aminopeptidase N OS=Caulobacter crescentus GN=pepN PE=3 SV=2
Syncc9605_2076 Blast Hits [sprot] PPNK_CAMJD (sp|A7H4H1) Probable inorganic polyphosphate/ATP-NAD kinase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ppnK PE=3 SV=1
Syncc9605_2108 Blast Hits [sprot] AMPA_SYNS9 (sp|Q3AZE8) Probable cytosol aminopeptidase OS=Synechococcus sp. (strain CC9902) GN=pepA PE=3 SV=1
Syncc9605_2317 Blast Hits [sprot] AMPB_RAT (sp|O09175) Aminopeptidase B OS=Rattus norvegicus GN=Rnpep PE=1 SV=2
Syncc9605_2514 Blast Hits [sprot] VFR_PSEAE (sp|P55222) Cyclic AMP receptor-like protein OS=Pseudomonas aeruginosa GN=vfr PE=1 SV=1
Syncc9605_0261 Blast Hits [pln_est] gb|FL686454|FL686454 KLHRRC001_03-D11 Deschampsia antarctica Antarctic Library Deschampsia antarctica cDNA 5', mRNA sequence.
Syncc9605_1831 Blast Hits [pln_est] dbj|DN826578|DN826578 G.hir-8,14 hrs post inoculation 521 Leaf cDNA 8,14 hrs post inoculation with Xanthomonas campestris pv. malvacearum 3631 Gossypium hirsutum cDNA, mRNA sequence.
Syncc9605_0167 Blast Hits [TAIR_pep] AT1G30520.1 | Symbols: AAE14 | AAE14 (Acyl-Activating Enzyme 14); AMP binding / o-succinylbenzoate-CoA ligase | chr1:10811039-10813546 FORWARD
Syncc9605_0862 Blast Hits [TAIR_pep] AT2G20050.1 | Symbols: | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase | chr2:8649779-8654193 REVERSE
Syncc9605_1236 Blast Hits [TAIR_pep] AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter | chr5:26861822-26863580 FORWARD
Syncc9605_1416 Blast Hits [TAIR_pep] AT4G16360.2 | Symbols: | AMP-activated protein kinase | chr4:9245662-9246833 FORWARD
Syncc9605_1932 Blast Hits [TAIR_pep] AT2G17650.1 | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD
Syncc9605_2015 Blast Hits [TAIR_pep] AT5G35930.1 | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:14067197-14074404 REVERSE
Syncc9605_2424 Blast Hits [TAIR_pep] AT3G43153.1 | Symbols: | cAMP-dependent protein kinase inhibitor-related | chr3:15150104-15150916 REVERSE
Syncc9605_2552 Blast Hits [TAIR_pep] AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding | chr5:7280632-7287037 REVERSE

Word clouds

API

? | +/- | Top
Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
Table of contents (46)
1.342049654

MicrobeBase