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Full-text search result: 59 genes by "564" TXT SET

Synechococcus sp. CC9605 (59 genes ) TXT SET

Syncc9605_0011 InterPro NULL NULL; HMMPanther:PTHR11564 PTHR11564
InterPro NULL NULL; HMMPanther:PTHR11564:SF6 PTHR11564:SF6
Syncc9605_0564 Gene product ATPase-like
Function General function prediction only: General function prediction only
InterPro IPR014818 Phage/plasmid primase, P4, C-terminal; HMMPfam:PF08706 D5_N
InterPro IPR014818 Phage/plasmid primase, P4, C-terminal; HMMSmart:SM00885 D5_N
InterPro NULL NULL; HMMPfam:PF03288 Pox_D5
InterPro NULL NULL; superfamily:SSF52540 SSF52540
Blast Hits [TAIR_pep] AT5G66020.1 | Symbols: IBS2, ATSAC1B, ATSAC6, SACIB | ATSAC1B (SUPPRESSOR OF ACTIN 1B); phosphatidylinositol-4,5-bisphosphate 5-phosphatase | chr5:26401193-26404691 REVERSE
Blast Hits [nr] ref|ZP_01123038.1| ATPase-like protein [Synechococcus sp. WH 7805] gi|88788740|gb|EAR19895.1| ATPase-like protein [Synechococcus sp. WH 7805]
Blast Hits [pln_est] dbj|DV450727|DV450727 CV02005A1F06.f1 CV02-normalized library Manihot esculenta cDNA clone CV02005A1F06.f1, mRNA sequence.
Blast Hits [sprot] PRIM_BPP4 (sp|P10277) Putative P4-specific DNA primase OS=Enterobacteria phage P4 GN=Alpha PE=1 SV=1
Syncc9605_0882 InterPro IPR004780 Signal recognition particle, SRP; HMMPanther:PTHR11564:SF7 SRP_sub
InterPro NULL NULL; HMMPanther:PTHR11564 PTHR11564
Blast Hits [nr] ref|ZP_05789364.1| signal recognition particle protein [Synechococcus sp. WH 8109] gi|260413268|gb|EEX06564.1| signal recognition particle protein [Synechococcus sp. WH 8109]
Syncc9605_2087 InterPro NULL NULL; superfamily:SSF56425 SSF56425
Syncc9605_2274 InterPro IPR000181 Formylmethionine deformylase; superfamily:SSF56420 Fmet_deformylase
Syncc9605_2335 InterPro NULL NULL; superfamily:SSF56425 SSF56425
Syncc9605_2512 InterPro IPR001564 Nucleoside diphosphate kinase, core; FPrintScan:PR01243 NUCDPKINASE
InterPro IPR001564 Nucleoside diphosphate kinase, core; Gene3D:G3DSA:3.30.70.141 NDK
InterPro IPR001564 Nucleoside diphosphate kinase, core; HMMPanther:PTHR11349 Nuc_diP_kinase_core
InterPro IPR001564 Nucleoside diphosphate kinase, core; HMMPfam:PF00334 NDK
InterPro IPR001564 Nucleoside diphosphate kinase, core; HMMSmart:SM00562 NDK
InterPro IPR001564 Nucleoside diphosphate kinase, core; superfamily:SSF54919 NDK
Syncc9605_2564 Gene product short-chain dehydrogenase/reductase (SDR) superfamily
Function Lipid transport and metabolism: Lipid transport and metabolism
GO term Biological Process: metabolic process (GO:0008152)
GO term Biological Process: oxidation reduction (GO:0055114)
GO term Molecular Function: binding (GO:0005488)
GO term Molecular Function: catalytic activity (GO:0003824)
GO term Molecular Function: oxidoreductase activity (GO:0016491)
InterPro IPR002198 Short-chain dehydrogenase/reductase SDR; HMMPanther:PTHR19410 ADH_short_C2
InterPro IPR002198 Short-chain dehydrogenase/reductase SDR; HMMPfam:PF00106 adh_short
InterPro IPR002347 Glucose/ribitol dehydrogenase; FPrintScan:PR00081 GDHRDH
InterPro IPR016040 NAD(P)-binding domain; Gene3D:G3DSA:3.40.50.720 NAD(P)-bd
InterPro IPR016040 NAD(P)-binding domain; superfamily:SSF51735 NAD(P)-bd
InterPro NULL NULL; HMMPanther:PTHR19410:SF108 PTHR19410:SF108
Blast Hits [TAIR_pep] AT4G23430.2 | Symbols: | short-chain dehydrogenase/reductase (SDR) family protein | chr4:12229171-12231493 FORWARD
Blast Hits [nr] ref|ZP_05788653.1| short-chain dehydrogenase/reductase [Synechococcus sp. WH 8109] gi|260412557|gb|EEX05853.1| short-chain dehydrogenase/reductase [Synechococcus sp. WH 8109]
Blast Hits [pln_est] gb|BE642825|BE642825 Cri2_7_B21_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_7_B21 5', mRNA sequence.
Blast Hits [sprot] RDH12_MOUSE (sp|Q8BYK4) Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1
Syncc9605_2590 InterPro IPR001045 Spermine synthase; HMMPfam:PF01564 Spermine_synth
Syncc9605_2679 InterPro IPR018223 Argininosuccinate synthase, conserved site; PatternScan:PS00564 ARGININOSUCCIN_SYN_1
Blast Hits [nr] ref|ZP_05789564.1| argininosuccinate synthase [Synechococcus sp. WH 8109] gi|260413468|gb|EEX06764.1| argininosuccinate synthase [Synechococcus sp. WH 8109]
Syncc9605_1564 Gene product hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [nr] ref|ZP_05789587.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260413491|gb|EEX06787.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Blast Hits [sprot] QPCT_HUMAN (sp|Q16769) Glutaminyl-peptide cyclotransferase OS=Homo sapiens GN=QPCT PE=1 SV=1
Syncc9605_2150 GO term Biological Process: L-serine biosynthetic process (GO:0006564)
Syncc9605_0364 Blast Hits [nr] ref|ZP_05790364.1| 50S ribosomal protein L5 [Synechococcus sp. WH 8109] gi|260414268|gb|EEX07564.1| 50S ribosomal protein L5 [Synechococcus sp. WH 8109]
Syncc9605_0550 Blast Hits [nr] ref|ZP_05790660.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260414564|gb|EEX07860.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Syncc9605_0551 Blast Hits [nr] ref|YP_382200.1| hypothetical protein Syncc9605_1904 [Synechococcus sp. CC9605] gi|78197880|gb|ABB35645.1| hypothetical protein Syncc9605_1904 [Synechococcus sp. CC9605]
Syncc9605_0588 Blast Hits [nr] ref|ZP_05788443.1| phage shock protein A [Synechococcus sp. WH 8109] gi|260412347|gb|EEX05643.1| phage shock protein A [Synechococcus sp. WH 8109]
Syncc9605_0689 Blast Hits [nr] ref|ZP_05788448.1| CutA1 divalent ion tolerance protein [Synechococcus sp. WH 8109] gi|260412352|gb|EEX05648.1| CutA1 divalent ion tolerance protein [Synechococcus sp. WH 8109]
Syncc9605_0750 Blast Hits [nr] ref|ZP_05788446.1| Ham1 family protein [Synechococcus sp. WH 8109] gi|260412350|gb|EEX05646.1| Ham1 family protein [Synechococcus sp. WH 8109]
Syncc9605_0927 Blast Hits [nr] ref|ZP_05788660.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260412564|gb|EEX05860.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Syncc9605_1007 Blast Hits [nr] ref|ZP_05788440.1| ATP-dependent chaperone ClpB [Synechococcus sp. WH 8109] gi|260412344|gb|EEX05640.1| ATP-dependent chaperone ClpB [Synechococcus sp. WH 8109]
Syncc9605_1232 Blast Hits [nr] ref|YP_382199.1| hypothetical protein Syncc9605_1903 [Synechococcus sp. CC9605] gi|78197879|gb|ABB35644.1| hypothetical protein Syncc9605_1903 [Synechococcus sp. CC9605]
Syncc9605_1248 Blast Hits [nr] ref|ZP_05788447.1| cytochrome c-type biogenesis protein CcsB [Synechococcus sp. WH 8109] gi|260412351|gb|EEX05647.1| cytochrome c-type biogenesis protein CcsB [Synechococcus sp. WH 8109]
Syncc9605_1327 Blast Hits [nr] ref|ZP_05788442.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH 8109] gi|260412346|gb|EEX05642.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH 8109]
Syncc9605_1476 Blast Hits [nr] ref|ZP_05789660.1| possible SAM-dependent methyltransferase [Synechococcus sp. WH 8109] gi|260413564|gb|EEX06860.1| possible SAM-dependent methyltransferase [Synechococcus sp. WH 8109]
Syncc9605_2105 Blast Hits [nr] ref|YP_376576.1| hypothetical protein Syncc9902_0564 [Synechococcus sp. CC9902] gi|78168435|gb|ABB25532.1| hypothetical protein Syncc9902_0564 [Synechococcus sp. CC9902]
Syncc9605_2178 Blast Hits [nr] ref|ZP_05788364.1| small GTP-binding protein [Synechococcus sp. WH 8109] gi|260412268|gb|EEX05564.1| small GTP-binding protein [Synechococcus sp. WH 8109]
Syncc9605_2382 Blast Hits [nr] ref|ZP_05788444.1| photosystem I assembly protein Ycf3 [Synechococcus sp. WH 8109] gi|260412348|gb|EEX05644.1| photosystem I assembly protein Ycf3 [Synechococcus sp. WH 8109]
Syncc9605_2525 Blast Hits [nr] ref|ZP_05788445.1| small heat shock protein [Synechococcus sp. WH 8109] gi|260412349|gb|EEX05645.1| small heat shock protein [Synechococcus sp. WH 8109]
Syncc9605_2535 Blast Hits [nr] ref|ZP_05788449.1| pirin domain protein [Synechococcus sp. WH 8109] gi|260412353|gb|EEX05649.1| pirin domain protein [Synechococcus sp. WH 8109]
Syncc9605_2674 Blast Hits [nr] ref|ZP_05790564.1| chaperone protein DnaK [Synechococcus sp. WH 8109] gi|260414468|gb|EEX07764.1| chaperone protein DnaK [Synechococcus sp. WH 8109]
Syncc9605_0969 Blast Hits [sprot] YC52L_PROMA (sp|Q51893) Uncharacterized N-acetyltransferase ycf52-like OS=Prochlorococcus marinus GN=Pro_0564 PE=3 SV=1
Syncc9605_0101 Blast Hits [pln_est] gb|FL670564|FL670564 7J24 Solanum tuberosum cv. Yungay adult leaf, normalized Solanum tuberosum subsp. andigena cDNA, mRNA sequence.
Syncc9605_0272 Blast Hits [pln_est] emb|AM815645|AM815645 AM815645 seedling library, SL Nicotiana tabacum cDNA clone nt002047060, mRNA sequence.
Syncc9605_0491 Blast Hits [pln_est] dbj|EX277783|EX277783 1564757_5_N11_036 PY06 Carica papaya cDNA, mRNA sequence.
Syncc9605_0581 Blast Hits [pln_est] gb|GE564771|GE564771 CCHT22648.b1_P22.ab1 CCHT Niger Seed Guizotia abyssinica cDNA clone CCHT22648, mRNA sequence.
Syncc9605_1726 Blast Hits [pln_est] dbj|EH719122|EH719122 CNML5641.b1_A20.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNML5641, mRNA sequence.
Syncc9605_1748 Blast Hits [pln_est] dbj|DN256406|DN256406 Meso08893 Mesostigma vegetative library Mesostigma viride cDNA clone Meso2a28c04.t7, mRNA sequence.
Syncc9605_1832 Blast Hits [pln_est] dbj|EH735648|EH735648 CNMM8731.b1_E24.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMM8731, mRNA sequence.
Syncc9605_1883 Blast Hits [pln_est] emb|AM815645|AM815645 AM815645 seedling library, SL Nicotiana tabacum cDNA clone nt002047060, mRNA sequence.
Syncc9605_1950 Blast Hits [pln_est] dbj|EE564884|EE564884 BNZB_UP_114_A09_23AUG2004_079 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
Syncc9605_2069 Blast Hits [pln_est] dbj|DK948564|DK948564 DK948564 TST38 Adiantum capillus-veneris cDNA clone TST38A01NGRL0003_K10 5', mRNA sequence.
Syncc9605_2498 Blast Hits [pln_est] gb|CT891564|CT891564 CT891564 Phaeodactylum tricornutum low decadienal treated (0.5 ug/ml 2E, 4E-decadienal for 6 hours) Phaeodactylum tricornutum cDNA 5', mRNA sequence.
Syncc9605_2579 Blast Hits [pln_est] gb|GO256426|GO256426 1015-T3 G. okiensis cDNA Library Griffithsia okiensis cDNA 5', mRNA sequence.
Syncc9605_0250 Blast Hits [TAIR_pep] AT1G53110.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: PPI2 (proton pump interactor 2); protein binding (TAIR:AT3G15340.2); Has 9097 Blast hits to 6362 proteins in 564 species: Archae - 111; Bacteria - 824; Metazoa - 3326; Fungi - 733; Plants - 436; Viruses - 39; Other Eukaryotes - 3628 (source: NCBI BLink). | chr1:19790434-19792016 FORWARD
Syncc9605_0497 Blast Hits [TAIR_pep] AT1G44170.2 | Symbols: ALDH3H1, ALDH4 | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) | chr1:16796564-16800031 REVERSE
Syncc9605_0601 Blast Hits [TAIR_pep] AT2G25640.1 | Symbols: | zinc ion binding | chr2:10910836-10913908 FORWARD
Syncc9605_0674 Blast Hits [TAIR_pep] AT1G21065.1 | Symbols: | unknown protein | chr1:7374210-7375644 FORWARD
Syncc9605_1268 Blast Hits [TAIR_pep] AT4G27440.2 | Symbols: PORB | PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase | chr4:13725648-13727107 FORWARD
Syncc9605_1389 Blast Hits [TAIR_pep] AT2G19940.2 | Symbols: | N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization | chr2:8613168-8615649 FORWARD
Syncc9605_1578 Blast Hits [TAIR_pep] AT3G16390.1 | Symbols: NSP3 | NSP3 (NITRILE SPECIFIER PROTEIN 3) | chr3:5562602-5564356 FORWARD
Syncc9605_1759 Blast Hits [TAIR_pep] AT3G07120.1 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:2254560-2255642 FORWARD
Syncc9605_1772 Blast Hits [TAIR_pep] AT3G52780.1 | Symbols: ATPAP20, PAP20 | PAP20; acid phosphatase/ protein serine/threonine phosphatase | chr3:19561525-19564195 REVERSE
Syncc9605_1930 Blast Hits [TAIR_pep] AT5G50790.1 | Symbols: | nodulin MtN3 family protein | chr5:20656461-20657827 REVERSE
Syncc9605_2036 Blast Hits [TAIR_pep] AT5G19680.1 | Symbols: | leucine-rich repeat family protein | chr5:6649663-6651564 FORWARD
Syncc9605_2076 Blast Hits [TAIR_pep] AT3G03560.1 | Symbols: | unknown protein | chr3:853153-856486 REVERSE
Syncc9605_2110 Blast Hits [TAIR_pep] AT5G64420.1 | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD
Syncc9605_2144 Blast Hits [TAIR_pep] AT5G17170.1 | Symbols: ENH1 | ENH1 (enhancer of sos3-1); electron carrier/ metal ion binding / protein binding | chr5:5649335-5650975 FORWARD
Syncc9605_2199 Blast Hits [TAIR_pep] AT2G02700.1 | Symbols: | DC1 domain-containing protein | chr2:756443-757942 FORWARD
Syncc9605_2398 Blast Hits [TAIR_pep] AT1G24560.1 | Symbols: | unknown protein | chr1:8702644-8705640 FORWARD

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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