in ?
cyanobase » Synechococcus sp. CC9605 » genes » search

Full-text search result: 143 genes by "302" TXT SET

Synechococcus sp. CC9605 (143 genes ) TXT SET

Syncc9605_1981 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_2112 InterPro IPR021453 Protein of unknown function DUF3104; HMMPfam:PF11302 DUF3104
Syncc9605_2221 InterPro IPR013022 Xylose isomerase-like, TIM barrel domain; superfamily:SSF51658 Xyl_isomerase-like_TIM-brl
Syncc9605_2293 InterPro IPR013026 Tetratricopeptide repeat-containing; ProfileScan:PS50293 TPR_REGION
Syncc9605_2302 Gene product Hydrophobe/amphiphile efflux-1 HAE1
Function Defense mechanisms: Defense mechanisms
GO term Biological Process: transport (GO:0006810)
GO term Cellular Component: integral to membrane (GO:0016021)
GO term Cellular Component: membrane (GO:0016020)
GO term Molecular Function: transporter activity (GO:0005215)
InterPro IPR001036 Acriflavin resistance protein; FPrintScan:PR00702 ACRIFLAVINRP
InterPro IPR001036 Acriflavin resistance protein; HMMPfam:PF00873 ACR_tran
InterPro IPR004764 Hydrophobe/amphiphile efflux-1 HAE1; HMMTigr:TIGR00915 2A0602
InterPro NULL NULL; superfamily:SSF82693 SSF82693
InterPro NULL NULL; superfamily:SSF82714 SSF82714
InterPro NULL NULL; superfamily:SSF82866 SSF82866
Blast Hits [TAIR_pep] AT5G51070.1 | Symbols: ERD1, CLPD | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:20764479-20768481 FORWARD
Blast Hits [nr] ref|NP_898247.1| RND family multidrug-efflux transporter [Synechococcus sp. WH 8102] gi|33633466|emb|CAE08671.1| putative RND family multidrug-efflux transporter [Synechococcus sp. WH 8102]
Blast Hits [pln_est] gb|FG598406|FG598406 PFRT_T3_48R_A02_22SEP2003_016 Opium poppy root cDNA library Papaver somniferum cDNA, mRNA sequence.
Blast Hits [sprot] ACRF_ECOLI (sp|P24181) Acriflavine resistance protein F OS=Escherichia coli (strain K12) GN=acrF PE=3 SV=2
Syncc9605_2310 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_2352 InterPro IPR013026 Tetratricopeptide repeat-containing; ProfileScan:PS50293 TPR_REGION
Syncc9605_2382 InterPro IPR013026 Tetratricopeptide repeat-containing; ProfileScan:PS50293 TPR_REGION
Syncc9605_2414 InterPro NULL NULL; HMMPanther:PTHR23029 PTHR23029
Syncc9605_2585 InterPro IPR021453 Protein of unknown function DUF3104; HMMPfam:PF11302 DUF3104
Syncc9605_2594 InterPro NULL NULL; superfamily:SSF103025 SSF103025
Syncc9605_2636 InterPro IPR007302 Protein of unknown function DUF407; HMMPfam:PF04174 DUF407
Syncc9605_0006 InterPro IPR013026 Tetratricopeptide repeat-containing; ProfileScan:PS50293 TPR_REGION
Syncc9605_0017 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
Syncc9605_0056 InterPro IPR013026 Tetratricopeptide repeat-containing; ProfileScan:PS50293 TPR_REGION
Syncc9605_0104 InterPro IPR011344 Single-strand DNA-binding; HMMPanther:PTHR10302 Single_strand_bd
Syncc9605_0119 InterPro IPR013026 Tetratricopeptide repeat-containing; ProfileScan:PS50293 TPR_REGION
Syncc9605_0186 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_0190 InterPro IPR017476 Nucleotide sugar dehydrogenase; HMMTigr:TIGR03026 NDP-sugDHase
Syncc9605_0230 InterPro NULL NULL; superfamily:SSF103025 SSF103025
Syncc9605_0249 InterPro IPR004268 Flagellin assembly, membrane protein MviN; HMMPfam:PF03023 MVIN
Syncc9605_0293 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_0302 Gene product 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase
Function Carbohydrate transport and metabolism: Carbohydrate transport and metabolism
GO term Biological Process: metabolic process (GO:0008152)
GO term Molecular Function: catalytic activity (GO:0003824)
InterPro IPR000887 KDPG/KHG aldolase; HMMPfam:PF01081 Aldolase
InterPro IPR000887 KDPG/KHG aldolase; PatternScan:PS00160 ALDOLASE_KDPG_KHG_2
InterPro IPR013785 Aldolase-type TIM barrel; Gene3D:G3DSA:3.20.20.70 Aldolase_TIM
InterPro NULL NULL; superfamily:SSF51569 SSF51569
Blast Hits [TAIR_pep] AT4G36210.3 | Symbols: | unknown protein | chr4:17130354-17134302 FORWARD
Blast Hits [nr] ref|ZP_05788486.1| 2-keto-3-deoxy-phosphogluconate aldolase [Synechococcus sp. WH 8109] gi|260412390|gb|EEX05686.1| 2-keto-3-deoxy-phosphogluconate aldolase [Synechococcus sp. WH 8109]
Blast Hits [pln_est] dbj|DN980915|DN980915 SV6_30H09_SV6_30_076 SV6 Solanum chacoense cDNA, mRNA sequence.
Blast Hits [sprot] ALKH_BACSU (sp|P50846) KHG/KDPG aldolase OS=Bacillus subtilis GN=kdgA PE=3 SV=1
Syncc9605_0313 InterPro IPR003029 Ribosomal protein S1, RNA binding domain; HMMPfam:PF00575 S1
InterPro IPR003029 Ribosomal protein S1, RNA binding domain; ProfileScan:PS50126 S1
Syncc9605_0374 InterPro IPR013025 Ribosomal protein L25/L23; HMMPfam:PF00276 Ribosomal_L23
Syncc9605_0468 InterPro IPR003029 Ribosomal protein S1, RNA binding domain; HMMPfam:PF00575 S1
InterPro IPR003029 Ribosomal protein S1, RNA binding domain; ProfileScan:PS50126 S1
Syncc9605_0552 InterPro IPR021453 Protein of unknown function DUF3104; HMMPfam:PF11302 DUF3104
Syncc9605_0570 InterPro IPR003029 Ribosomal protein S1, RNA binding domain; HMMPfam:PF00575 S1
InterPro IPR003029 Ribosomal protein S1, RNA binding domain; ProfileScan:PS50126 S1
Syncc9605_0701 InterPro NULL NULL; HMMPanther:PTHR23029 PTHR23029
Syncc9605_0709 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_0726 InterPro IPR003029 Ribosomal protein S1, RNA binding domain; HMMPfam:PF00575 S1
InterPro IPR003029 Ribosomal protein S1, RNA binding domain; ProfileScan:PS50126 S1
Syncc9605_0817 InterPro IPR013026 Tetratricopeptide repeat-containing; ProfileScan:PS50293 TPR_REGION
Syncc9605_0839 InterPro IPR013023 Acetohydroxy acid isomeroreductase; HMMPanther:PTHR21371 AcH_isomrdctse
InterPro IPR013023 Acetohydroxy acid isomeroreductase; HMMTigr:TIGR00465 ilvC
Syncc9605_0869 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_0949 InterPro IPR021453 Protein of unknown function DUF3104; HMMPfam:PF11302 DUF3104
Syncc9605_0954 InterPro IPR021453 Protein of unknown function DUF3104; HMMPfam:PF11302 DUF3104
Syncc9605_0976 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_1106 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
InterPro NULL NULL; HMMPanther:PTHR23023 PTHR23023
InterPro NULL NULL; HMMPanther:PTHR23023:SF5 PTHR23023:SF5
Syncc9605_1314 InterPro IPR003029 Ribosomal protein S1, RNA binding domain; HMMPfam:PF00575 S1
InterPro IPR003029 Ribosomal protein S1, RNA binding domain; ProfileScan:PS50126 S1
Syncc9605_1380 InterPro IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; FPrintScan:PR00985 TRNASYNTHLEU
InterPro IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; HMMPanther:PTHR11946:SF7 Leu_tRNAsyn_1a
InterPro IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; HMMTigr:TIGR00396 leuS_bact
Syncc9605_1429 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_1548 InterPro IPR021453 Protein of unknown function DUF3104; HMMPfam:PF11302 DUF3104
Syncc9605_1583 InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FPrintScan:PR00368 FADPNR
InterPro IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HMMPfam:PF07992 Pyr_redox_2
Syncc9605_1721 InterPro IPR021453 Protein of unknown function DUF3104; HMMPfam:PF11302 DUF3104
Syncc9605_1852 InterPro IPR003850 Phosphoribosylformylglycinamidine synthetase, PurS subunit; HMMTigr:TIGR00302 PurS
Syncc9605_1964 InterPro IPR013029 Protein of unknown function DUF933; HMMPfam:PF06071 YchF-GTPase_C
Syncc9605_1302 Gene product conserved hypothetical protein
Function Not in COGs: Not in COGs
Blast Hits [nr] ref|ZP_05790148.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260414052|gb|EEX07348.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Syncc9605_0130 GO term Molecular Function: ribosome binding (GO:0043022)
Syncc9605_0156 GO term Molecular Function: carbohydrate binding (GO:0030246)
Syncc9605_1096 GO term Cellular Component: outer membrane-bounded periplasmic space (GO:0030288)
Syncc9605_1171 GO term Cellular Component: outer membrane-bounded periplasmic space (GO:0030288)
Syncc9605_1294 GO term Cellular Component: outer membrane-bounded periplasmic space (GO:0030288)
Syncc9605_1809 GO term Cellular Component: outer membrane-bounded periplasmic space (GO:0030288)
Syncc9605_1954 GO term Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272)
Syncc9605_2073 GO term Cellular Component: outer membrane-bounded periplasmic space (GO:0030288)
Syncc9605_2206 GO term Molecular Function: enzyme regulator activity (GO:0030234)
Syncc9605_2463 GO term Biological Process: lipid glycosylation (GO:0030259)
GO term Molecular Function: carbohydrate binding (GO:0030246)
Syncc9605_2527 GO term Biological Process: protein secretion by the type I secretion system (GO:0030253)
GO term Cellular Component: type I protein secretion system complex (GO:0030256)
Syncc9605_0045 Blast Hits [nr] ref|ZP_05789123.1| cobalamin biosynthesis protein CbiD [Synechococcus sp. WH 8109] gi|260413027|gb|EEX06323.1| cobalamin biosynthesis protein CbiD [Synechococcus sp. WH 8109]
Syncc9605_0318 Blast Hits [nr] ref|ZP_05789122.1| ATP-dependent protease La [Synechococcus sp. WH 8109] gi|260413026|gb|EEX06322.1| ATP-dependent protease La [Synechococcus sp. WH 8109]
Syncc9605_0355 Blast Hits [nr] ref|ZP_05789118.1| 30S ribosomal protein S13 [Synechococcus sp. WH 8109] gi|260413022|gb|EEX06318.1| 30S ribosomal protein S13 [Synechococcus sp. WH 8109]
Syncc9605_0478 Blast Hits [nr] ref|ZP_05788398.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260412302|gb|EEX05598.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Syncc9605_0569 Blast Hits [nr] ref|ZP_05789120.1| CysQ [Synechococcus sp. WH 8109] gi|260413024|gb|EEX06320.1| CysQ [Synechococcus sp. WH 8109]
Syncc9605_0601 Blast Hits [nr] ref|ZP_05789125.1| twin-arginine translocation pathway signal [Synechococcus sp. WH 8109] gi|260413029|gb|EEX06325.1| twin-arginine translocation pathway signal [Synechococcus sp. WH 8109]
Syncc9605_0753 Blast Hits [nr] ref|NP_897808.1| ribulose bisphosphate carboxylase, small chain [Synechococcus sp. WH 8102] gi|87123945|ref|ZP_01079795.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp. RS9917] gi|88807728|ref|ZP_01123240.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp. WH 7805] gi|116075360|ref|ZP_01472620.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp. RS9916] gi|148239015|ref|YP_001224402.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp. WH 7803] gi|260434862|ref|ZP_05788832.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp. WH 8109] gi|61230206|sp|P0A4S5.1|RBS_SYNPX RecName: Full=Ribulose bisphosphate carboxylase small chain; Short=RuBisCO small subunit gi|61230207|sp|P0A4S6.1|RBS_SYNPW RecName: Full=Ribulose bisphosphate carboxylase small chain; Short=RuBisCO small subunit gi|1850940|gb|AAB48081.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit [Synechococcus sp.] gi|33639224|emb|CAE08232.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp. WH 8102] gi|82799255|gb|ABB92182.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small chain [uncultured marine type-A Synechococcus 4O4] gi|82799301|gb|ABB92227.1| ribulose bisphosphate carboxylase small chain [uncultured marine type-A Synechococcus 5B2] gi|86168514|gb|EAQ69771.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp. RS9917] gi|88788942|gb|EAR20097.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp. WH 7805] gi|90655467|gb|ABD96307.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [uncultured marine type-A Synechococcus GOM 3O6] gi|90655516|gb|ABD96355.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [uncultured marine type-A Synechococcus GOM 3O12] gi|90655552|gb|ABD96390.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [uncultured marine type-A Synechococcus GOM 4N23] gi|90655624|gb|ABD96460.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [uncultured marine type-A Synechococcus GOM 5D20] gi|116067557|gb|EAU73311.1| Ribulose bisphosphate carboxylase, small chain [Synechococcus sp. RS9916] gi|147847554|emb|CAK23105.1| Ribulose bisphosphate carboxylase small subunit [Synechococcus sp. WH 7803] gi|260412736|gb|EEX06032.1| ribulose bisphosphate carboxylase, small subunit [Synechococcus sp. WH 8109]
Syncc9605_0931 Blast Hits [nr] ref|ZP_07024521.1| hypothetical protein AlideDRAFT_4251 [Alicycliphilus denitrificans BC] gi|298519354|gb|EFI43028.1| hypothetical protein AlideDRAFT_4251 [Alicycliphilus denitrificans BC]
Syncc9605_0956 Blast Hits [nr] ref|YP_003343059.1| short-chain dehydrogenase/reductase SDR [Streptosporangium roseum DSM 43021] gi|270512038|gb|ACZ90316.1| short-chain dehydrogenase/reductase SDR [Streptosporangium roseum DSM 43021]
Syncc9605_1053 Blast Hits [nr] ref|ZP_05790398.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260414302|gb|EEX07598.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Syncc9605_1085 Blast Hits [nr] ref|ZP_05789116.1| conserved hypothetical protein [Synechococcus sp. WH 8109] gi|260413020|gb|EEX06316.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
Syncc9605_1102 Blast Hits [nr] ref|XP_002556150.1| KLTH0H06226p [Lachancea thermotolerans] gi|238942116|emb|CAR30288.1| KLTH0H06226p [Lachancea thermotolerans]
Syncc9605_1150 Blast Hits [nr] ref|ZP_05788302.1| ATPase [Synechococcus sp. WH 8109] gi|260412206|gb|EEX05502.1| ATPase [Synechococcus sp. WH 8109]
Syncc9605_1421 Blast Hits [nr] ref|NP_897418.1| hypothetical protein SYNW1325 [Synechococcus sp. WH 8102] gi|33633029|emb|CAE07840.1| hypothetical [Synechococcus sp. WH 8102]
Syncc9605_1461 Blast Hits [nr] ref|NP_897411.1| hypothetical protein SYNW1318 [Synechococcus sp. WH 8102] gi|33633022|emb|CAE07833.1| hypothetical [Synechococcus sp. WH 8102]
Syncc9605_1488 Blast Hits [nr] ref|ZP_05789102.1| periplasmic chelated iron-binding protein YfeA [Synechococcus sp. WH 8109] gi|260413006|gb|EEX06302.1| periplasmic chelated iron-binding protein YfeA [Synechococcus sp. WH 8109]
Syncc9605_1561 Blast Hits [nr] ref|ZP_05789124.1| acetyltransferase [Synechococcus sp. WH 8109] gi|260413028|gb|EEX06324.1| acetyltransferase [Synechococcus sp. WH 8109]
Syncc9605_1749 Blast Hits [nr] ref|ZP_01472331.1| hypothetical protein RS9916_25964 [Synechococcus sp. RS9916] gi|116067268|gb|EAU73022.1| hypothetical protein RS9916_25964 [Synechococcus sp. RS9916]
Syncc9605_1778 Blast Hits [nr] ref|ZP_01468166.1| hypothetical protein BL107_14665 [Synechococcus sp. BL107] gi|116066302|gb|EAU72059.1| hypothetical protein BL107_14665 [Synechococcus sp. BL107]
Syncc9605_2227 Blast Hits [nr] ref|ZP_01470691.1| hypothetical protein RS9916_33302 [Synechococcus sp. RS9916] gi|116068734|gb|EAU74486.1| hypothetical protein RS9916_33302 [Synechococcus sp. RS9916]
Syncc9605_2349 Blast Hits [nr] ref|ZP_05789119.1| conserved domain protein [Synechococcus sp. WH 8109] gi|260413023|gb|EEX06319.1| conserved domain protein [Synechococcus sp. WH 8109]
Syncc9605_2354 Blast Hits [nr] ref|NP_898302.1| hypothetical protein SYNW2211 [Synechococcus sp. WH 8102] gi|33639344|emb|CAE08726.1| hypothetical [Synechococcus sp. WH 8102]
Syncc9605_2606 Blast Hits [nr] ref|ZP_05789398.1| alpha amylase, catalytic subdomain [Synechococcus sp. WH 8109] gi|260413302|gb|EEX06598.1| alpha amylase, catalytic subdomain [Synechococcus sp. WH 8109]
Syncc9605_2685 Blast Hits [nr] ref|ZP_01470691.1| hypothetical protein RS9916_33302 [Synechococcus sp. RS9916] gi|116068734|gb|EAU74486.1| hypothetical protein RS9916_33302 [Synechococcus sp. RS9916]
Syncc9605_0594 Blast Hits [sprot] NTRC_KLEPN (sp|P03029) Nitrogen assimilation regulatory protein OS=Klebsiella pneumoniae GN=ntrC PE=1 SV=1
Syncc9605_2618 Blast Hits [sprot] LIVM_SALTY (sp|P30296) High-affinity branched-chain amino acid transport system permease protein livM OS=Salmonella typhimurium GN=livM PE=3 SV=1
Syncc9605_0117 Blast Hits [pln_est] gb|FC509245|FC509245 CBFS1302.rev CBFS Thalassiosira pseudonana silicate limited cells (-Si) Thalassiosira pseudonana cDNA clone CBFS1302 3', mRNA sequence.
Syncc9605_0124 Blast Hits [pln_est] gb|GR302668|GR302668 WRIC_284 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to Os06g0133800, mRNA sequence.
Syncc9605_0197 Blast Hits [pln_est] gb|GR302885|GR302885 WRIC_501 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to cytochrome b559 alpha chain, mRNA sequence.
Syncc9605_0307 Blast Hits [pln_est] gb|GR302482|GR302482 WRIC_98 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to photosystem II thylakoid membrane protein, mRNA sequence.
Syncc9605_0332 Blast Hits [pln_est] gb|GR302813|GR302813 WRIC_429 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to photosystem I P700 apoprotein A2, mRNA sequence.
Syncc9605_0357 Blast Hits [pln_est] gb|CD830200|CD830200 BN40.044K16F011221 BN40 Brassica napus cDNA clone BN40044K16, mRNA sequence.
Syncc9605_0397 Blast Hits [pln_est] gb|CI367734|CI367734 CI367734 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone J03B3025E04M3 3', mRNA sequence.
Syncc9605_0470 Blast Hits [pln_est] gb|GR302745|GR302745 WRIC_361 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to photosystem II 47 kDa protein, mRNA sequence.
Syncc9605_0519 Blast Hits [pln_est] gb|GR302482|GR302482 WRIC_98 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to photosystem II thylakoid membrane protein, mRNA sequence.
Syncc9605_0669 Blast Hits [pln_est] gb|BG451302|BG451302 NF105F10DT1F1089 Drought Medicago truncatula cDNA clone NF105F10DT 5', mRNA sequence.
Syncc9605_1042 Blast Hits [pln_est] gb|GR302482|GR302482 WRIC_98 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to photosystem II thylakoid membrane protein, mRNA sequence.
Syncc9605_1142 Blast Hits [pln_est] gb|FG503554|FG503554 030219KAVC001845HT (KAVC) Actinidia chinensis cell culture Actinidia chinensis cDNA clone KAVCC00184, mRNA sequence.
Syncc9605_1352 Blast Hits [pln_est] dbj|EC730218|EC730218 MVE00000927 Mesostigma viride Regular library 2 Mesostigma viride cDNA, mRNA sequence.
Syncc9605_1611 Blast Hits [pln_est] gb|BG441302|BG441302 GA__Ea0012K13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0012K13f, mRNA sequence.
Syncc9605_1993 Blast Hits [pln_est] gb|GR302845|GR302845 WRIC_461 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to gi|60392964|sp|P11095|PSBC_HORVU Photosystem II 44 kDa reaction center protein (P6 protein) (CP43), mRNA sequence.
Syncc9605_2102 Blast Hits [pln_est] gb|CN918772|CN918772 030207ABPB006153HT (ABPB) M9 root tips Malus x domestica cDNA clone ABPB006153, mRNA sequence.
Syncc9605_2171 Blast Hits [pln_est] gb|GR302461|GR302461 WRIC_77 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) and wheat Triticum aestivum cDNA 5' similar to ATP synthase CF1 beta chain, mRNA sequence.
Syncc9605_2441 Blast Hits [pln_est] gb|FF587015|FF587015 BG03022B1G09.f1 BG03- primary and normalized libraries Elymus wawawaiensis/Elymus lanceolatus mixed EST library cDNA clone BG03022B1G09.f1, mRNA sequence.
Syncc9605_2468 Blast Hits [pln_est] dbj|EC732302|EC732302 MVE00003409 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to 50S ribosomal protein L12, mRNA sequence.
Syncc9605_0039 Blast Hits [TAIR_pep] AT3G14950.1 | Symbols: TTL2 | TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2); binding | chr3:5030216-5032892 REVERSE
Syncc9605_0110 Blast Hits [TAIR_pep] AT3G13490.1 | Symbols: OVA5, ATKRS-2 | OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding | chr3:4395984-4399302 REVERSE
Syncc9605_0146 Blast Hits [TAIR_pep] AT5G17580.1 | Symbols: | phototropic-responsive NPH3 family protein | chr5:5795302-5797031 FORWARD
Syncc9605_0193 Blast Hits [TAIR_pep] AT1G09350.1 | Symbols: AtGolS3 | AtGolS3 (Arabidopsis thaliana galactinol synthase 3); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups | chr1:3019888-3021214 FORWARD
Syncc9605_0245 Blast Hits [TAIR_pep] AT4G31115.2 | Symbols: | unknown protein | chr4:15130243-15131847 FORWARD
Syncc9605_0360 Blast Hits [TAIR_pep] AT2G33800.1 | Symbols: | ribosomal protein S5 family protein | chr2:14300925-14302352 REVERSE
Syncc9605_0403 Blast Hits [TAIR_pep] AT1G03475.1 | Symbols: LIN2, HEMF1, ATCPO-I | LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase | chr1:869302-871175 REVERSE
Syncc9605_0500 Blast Hits [TAIR_pep] AT1G80460.1 | Symbols: NHO1, GLI1 | NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase | chr1:30246960-30249055 REVERSE
Syncc9605_0515 Blast Hits [TAIR_pep] AT1G28140.1 | Symbols: | unknown protein | chr1:9833029-9834390 REVERSE
Syncc9605_0581 Blast Hits [TAIR_pep] AT1G10110.1 | Symbols: | F-box family protein | chr1:3302940-3303938 FORWARD
Syncc9605_0675 Blast Hits [TAIR_pep] AT5G50100.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336), Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); Has 598 Blast hits to 598 proteins in 152 species: Archae - 0; Bacteria - 266; Metazoa - 3; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr5:20371916-20373172 FORWARD
Syncc9605_0853 Blast Hits [TAIR_pep] AT5G45230.1 | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr5:18302147-18308303 REVERSE
Syncc9605_0858 Blast Hits [TAIR_pep] AT1G80600.1 | Symbols: WIN1 | WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase | chr1:30298675-30300513 REVERSE
Syncc9605_0884 Blast Hits [TAIR_pep] AT1G80530.1 | Symbols: | nodulin family protein | chr1:30278224-30280247 REVERSE
Syncc9605_0887 Blast Hits [TAIR_pep] AT5G66470.1 | Symbols: | GTP binding / RNA binding | chr5:26541986-26544302 REVERSE
Syncc9605_0905 Blast Hits [TAIR_pep] AT2G39140.1 | Symbols: SVR1 | SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase | chr2:16330238-16333153 FORWARD
Syncc9605_0992 Blast Hits [TAIR_pep] AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase | chr1:23355329-23361126 REVERSE
Syncc9605_1089 Blast Hits [TAIR_pep] AT5G56930.1 | Symbols: emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding | chr5:23027949-23030565 REVERSE
Syncc9605_1264 Blast Hits [TAIR_pep] AT1G80480.1 | Symbols: PTAC17 | PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) | chr1:30258272-30260570 REVERSE
Syncc9605_1321 Blast Hits [TAIR_pep] AT1G80380.3 | Symbols: | phosphoribulokinase/uridine kinase-related | chr1:30217895-30219784 FORWARD
Syncc9605_1480 Blast Hits [TAIR_pep] AT1G80540.1 | Symbols: | unknown protein | chr1:30281638-30284258 REVERSE
Syncc9605_1542 Blast Hits [TAIR_pep] AT1G50575.1 | Symbols: | lysine decarboxylase family protein | chr1:18728862-18730296 REVERSE
Syncc9605_1560 Blast Hits [TAIR_pep] AT4G14420.1 | Symbols: | lesion inducing protein-related | chr4:8302171-8303738 REVERSE
Syncc9605_1616 Blast Hits [TAIR_pep] AT2G39140.1 | Symbols: SVR1 | SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase | chr2:16330238-16333153 FORWARD
Syncc9605_1704 Blast Hits [TAIR_pep] AT5G53020.1 | Symbols: | unknown protein | chr5:21499899-21502235 FORWARD
Syncc9605_1763 Blast Hits [TAIR_pep] AT3G04930.1 | Symbols: | transcription regulator | chr3:1363029-1364399 FORWARD
Syncc9605_1796 Blast Hits [TAIR_pep] AT5G49900.1 | Symbols: | catalytic/ glucosylceramidase | chr5:20297235-20302019 REVERSE
Syncc9605_1820 Blast Hits [TAIR_pep] AT3G27610.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleotidyltransferase (TAIR:AT2G01220.2); Has 367 Blast hits to 361 proteins in 33 species: Archae - 6; Bacteria - 21; Metazoa - 0; Fungi - 3; Plants - 35; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr3:10225729-10228152 REVERSE
Syncc9605_1845 Blast Hits [TAIR_pep] AT5G49900.1 | Symbols: | catalytic/ glucosylceramidase | chr5:20297235-20302019 REVERSE
Syncc9605_1855 Blast Hits [TAIR_pep] AT1G10110.1 | Symbols: | F-box family protein | chr1:3302940-3303938 FORWARD
Syncc9605_1865 Blast Hits [TAIR_pep] AT1G80560.1 | Symbols: | 3-isopropylmalate dehydrogenase, chloroplast, putative | chr1:30287833-30290126 FORWARD
Syncc9605_1890 Blast Hits [TAIR_pep] AT4G03020.1 | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE
Syncc9605_1937 Blast Hits [TAIR_pep] AT4G09250.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), LisH dimerisation motif (InterPro:IPR006594), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 419 Blast hits to 407 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 78; Plants - 48; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). | chr4:5876687-5878978 FORWARD
Syncc9605_1983 Blast Hits [TAIR_pep] AT2G39140.1 | Symbols: SVR1 | SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase | chr2:16330238-16333153 FORWARD
Syncc9605_2033 Blast Hits [TAIR_pep] AT5G63080.1 | Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr5:25300026-25302321 REVERSE
Syncc9605_2387 Blast Hits [TAIR_pep] AT2G30200.1 | Symbols: | [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase | chr2:12883162-12885482 REVERSE
Syncc9605_2402 Blast Hits [TAIR_pep] AT2G44200.1 | Symbols: | unknown protein | chr2:18276302-18278240 FORWARD
Syncc9605_2444 Blast Hits [TAIR_pep] AT2G25870.1 | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr2:11031159-11034302 FORWARD
Syncc9605_2454 Blast Hits [TAIR_pep] AT3G14950.1 | Symbols: TTL2 | TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2); binding | chr3:5030216-5032892 REVERSE
Syncc9605_2607 Blast Hits [TAIR_pep] AT1G80410.1 | Symbols: EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding | chr1:30227963-30234832 REVERSE

Word clouds

API

? | +/- | Top
Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
Table of contents (143)
2.36679105

MicrobeBase