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Full-text search result: 157 genes by "factor" TXT SET

Prochlorococcus marinus str. NATL2A (157 genes ) TXT SET

PMN2A_0013 Gene product possible type II alternative RNA polymerase sigma factor
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|YP_001014459.1| type II alternative sigma-70 family RNA polymerase sigma factor [Prochlorococcus marinus str. NATL1A] gi|123960411|gb|ABM75194.1| Putative type II alternative sigma factor, sigma70 family [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RPOD4_SYNE7 (sp|Q31QR8) RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4 PE=3 SV=1
PMN2A_0138 InterPro IPR016781 Anti-sigma regulatory factor, PmgA, predicted; HMMPIR:PIRSF020906 Anti_s_fact_PmgA_prd
Blast Hits [nr] ref|YP_001014593.1| anti-sigma regulatory factor (Ser/Thr protein kinase) [Prochlorococcus marinus str. NATL1A] gi|123960545|gb|ABM75328.1| Anti-sigma regulatory factor (Ser/Thr protein kinase) [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] SP2AB_BACME (sp|P35148) Anti-sigma F factor OS=Bacillus megaterium GN=spoIIAB PE=3 SV=1
PMN2A_0158 Gene product elongation factor Ts
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal; HMMPfam:PF00627 UBA
InterPro IPR001816 Translation elongation factor EFTs/EF1B; HMMPanther:PTHR11741 Transl_elong_EFTs/EF1B
InterPro IPR001816 Translation elongation factor EFTs/EF1B; HMMTigr:TIGR00116 tsf
InterPro IPR014039 Translation elongation factor EFTs/EF1B, dimerisation; Gene3D:G3DSA:3.30.479.20 Transl_elong_EFTs/EF1B_dimer
InterPro IPR014039 Translation elongation factor EFTs/EF1B, dimerisation; HMMPfam:PF00889 EF_TS
InterPro IPR014039 Translation elongation factor EFTs/EF1B, dimerisation; superfamily:SSF54713 EF_TS
InterPro IPR018101 Translation elongation factor Ts, conserved site; PatternScan:PS01126 EF_TS_1
InterPro IPR018101 Translation elongation factor Ts, conserved site; PatternScan:PS01127 EF_TS_2
Blast Hits [TAIR_pep] AT4G29060.1 | Symbols: emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor | chr4:14317744-14321315 FORWARD
Blast Hits [nr] ref|YP_001014613.1| elongation factor Ts [Prochlorococcus marinus str. NATL1A] gi|166221241|sp|A2C1I8.1|EFTS_PROM1 RecName: Full=Elongation factor Ts; Short=EF-Ts gi|123960565|gb|ABM75348.1| putative Elongation factor Ts [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] EFTS_PROM1 (sp|A2C1I8) Elongation factor Ts OS=Prochlorococcus marinus (strain NATL1A) GN=tsf PE=3 SV=1
PMN2A_0166 InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; Gene3D:G3DSA:3.30.70.240 Transl_elong_EFG/EF2_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMPfam:PF00679 EFG_C
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EFG_III_V
Blast Hits [TAIR_pep] AT5G13650.1 | Symbols: | elongation factor family protein | chr5:4397821-4402364 FORWARD
PMN2A_0095 Gene product peptide chain release factor 3
GO term Molecular Function: translation release factor activity, codon specific (GO:0016149)
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR004548 Peptide chain release factor 3; HMMTigr:TIGR00503 prfC: peptide chain release factor
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translation proteins
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EF-G C-terminal domain-like
InterPro NULL NULL; HMMPanther:PTHR23115 TRANSLATION FACTOR
InterPro NULL NULL; HMMPanther:PTHR23115:SF13 TRANSLATION ELONGATION FACTOR G
Blast Hits [TAIR_pep] AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding | chr1:23233622-23236321 REVERSE
Blast Hits [nr] ref|NP_875421.1| peptide chain release factor 3 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238007|gb|AAQ00074.1| Peptide chain release factor RF-3 [Prochlorococcus marinus subsp. marinus str. CCMP1375]
Blast Hits [sprot] RF3_SYNE7 (sp|Q31KM4) Peptide chain release factor 3 OS=Synechococcus elongatus (strain PCC 7942) GN=prfC PE=3 SV=1
PMN2A_0260 Gene product anti-anti-sigma regulatory factor
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; Gene3D:G3DSA:3.30.750.24 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
Blast Hits [nr] ref|YP_001014752.1| STAS domain-containing protein [Prochlorococcus marinus str. NATL1A] gi|123960704|gb|ABM75487.1| STAS domain:Anti-sigma factor antagonist [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RSBV_STRCO (sp|Q9WVX8) Anti-sigma-B factor antagonist OS=Streptomyces coelicolor GN=rsbV PE=1 SV=1
PMN2A_0369 Gene product transcription-repair coupling factor
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR003711 Transcription factor CarD; HMMPfam:PF02559 CarD_TRCF
InterPro IPR004576 Transcription-repair coupling factor; HMMTigr:TIGR00580 mfd
InterPro IPR005118 Transcription-repair-coupling factor; HMMPfam:PF03461 TRCF
Blast Hits [nr] ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL1A] gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] MFD_SYNY3 (sp|Q55750) Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1
PMN2A_0556 GO term Molecular Function: translation release factor activity (GO:0003747)
InterPro IPR000352 Class I peptide chain release factor; HMMPfam:PF00472 RF-1
Blast Hits [TAIR_pep] AT1G62850.3 | Symbols: | translation release factor | chr1:23272608-23274211 REVERSE
PMN2A_0631 InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
PMN2A_0714 InterPro IPR001398 Macrophage migration inhibitory factor; BlastProDom:PD004816 Macrophage_inhib_fac
InterPro IPR001398 Macrophage migration inhibitory factor; HMMPanther:PTHR11954 MIF
InterPro IPR001398 Macrophage migration inhibitory factor; HMMPfam:PF01187 MIF
Blast Hits [TAIR_pep] AT5G57170.1 | Symbols: | macrophage migration inhibitory factor family protein / MIF family protein | chr5:23162201-23163140 REVERSE
Blast Hits [sprot] MIF_SHEEP (sp|Q1ZZU7) Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1
PMN2A_0759 Gene product bacterial translation initiation factor 1 (bIF-1)
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR004368 Translation initiation factor IF-1; HMMTigr:TIGR00008 infA
Blast Hits [TAIR_pep] AT4G11175.1 | Symbols: | translation initiation factor IF-1, chloroplast, putative | chr4:6818162-6818806 FORWARD
Blast Hits [nr] ref|YP_001015421.1| translation initiation factor IF-1 [Prochlorococcus marinus str. NATL1A] gi|123961373|gb|ABM76156.1| translation initiation factor IF-1 [Prochlorococcus marinus str. NATL1A]
Blast Hits [pln_est] dbj|DV203612|DV203612 4-B10-T3 H. pluvialis cDNA Lamda ZAP library Haematococcus pluvialis cDNA clone 4-B10-T3 similar to Initiation factor IF-1, mRNA sequence.
Blast Hits [sprot] IF11_DESDG (sp|Q30V89) Translation initiation factor IF-1 1 OS=Desulfovibrio desulfuricans (strain G20) GN=infA1 PE=3 SV=1
PMN2A_0856 GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00716 SIGMA70_2
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma2 domain of RNA polymerase sigma factors
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Blast Hits [nr] ref|YP_001551221.1| type II alternative sigma-70 family RNA polymerase sigma factor [Prochlorococcus marinus str. MIT 9211] gi|159889053|gb|ABX09267.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinus str. MIT 9211]
Blast Hits [sprot] RPOD4_SYNE7 (sp|Q31QR8) RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4 PE=3 SV=1
PMN2A_1023 Gene product transcription elongation factor NusA
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR010213 Transcription termination factor NusA; HMMTigr:TIGR01953 NusA
InterPro IPR013735 Transcription factor NusA, N-terminal; Gene3D:G3DSA:3.30.1480.10 TF_NusA_N
InterPro IPR013735 Transcription factor NusA, N-terminal; HMMPfam:PF08529 NusA_N
InterPro IPR013735 Transcription factor NusA, N-terminal; superfamily:SSF69705 TF_NusA_N
Blast Hits [nr] ref|YP_001015713.1| transcription elongation factor NusA [Prochlorococcus marinus str. NATL1A] gi|123961666|gb|ABM76449.1| N utilization substance protein A [Prochlorococcus marinus str. NATL1A]
PMN2A_1025 Gene product translation initiation factor IF-2
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR000178 Initiation factor 2; HMMTigr:TIGR00487 IF-2
InterPro IPR000178 Initiation factor 2; PatternScan:PS01176 IF2
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR006847 Translation initiation factor IF-2, N-terminal; HMMPfam:PF04760 IF2_N
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR015760 Translation initiation factor 2 related; HMMPanther:PTHR23115:SF41 aIF-2
Blast Hits [TAIR_pep] AT1G17220.1 | Symbols: FUG1 | FUG1 (fu-gaeri1); translation initiation factor | chr1:5885383-5890165 FORWARD
Blast Hits [nr] ref|YP_001015715.1| translation initiation factor IF-2 [Prochlorococcus marinus str. NATL1A] gi|166232572|sp|A2C4P1.1|IF2_PROM1 RecName: Full=Translation initiation factor IF-2 gi|123961668|gb|ABM76451.1| Translation initiation factor IF-2 [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] IF2_PROM1 (sp|A2C4P1) Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain NATL1A) GN=infB PE=3 SV=1
PMN2A_1049 InterPro IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni(2+)-binding GTPase; HMMPIR:PIRSF005624 Ni-bind_GTPase
PMN2A_1074 Gene product elongation factor Tu
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004160 Translation elongation factor EFTu/EF1A, C-terminal; HMMPfam:PF03143 GTP_EFTU_D3
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle; HMMPanther:PTHR23115:SF31 Transl_elong_EFTu/EF1A_bac/org
InterPro IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle; HMMTigr:TIGR00485 EF-Tu
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal; superfamily:SSF50465 Elong_init_C
Blast Hits [TAIR_pep] AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B | ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B); GTP binding / GTPase/ translation elongation factor | chr4:10990036-10991466 FORWARD
Blast Hits [nr] ref|YP_001015769.1| elongation factor Tu [Prochlorococcus marinus str. NATL1A] gi|166222882|sp|A2C4U5.1|EFTU_PROM1 RecName: Full=Elongation factor Tu; Short=EF-Tu gi|123961722|gb|ABM76505.1| Elongation factor Tu [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] EFTU_PROM1 (sp|A2C4U5) Elongation factor Tu OS=Prochlorococcus marinus (strain NATL1A) GN=tuf PE=3 SV=1
PMN2A_1075 Gene product elongation factor G
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; Gene3D:G3DSA:3.30.70.240 Transl_elong_EFG/EF2_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMPfam:PF00679 EFG_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMSmart:SM00838 EFG_C
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR004540 Translation elongation factor EFG/EF2; HMMTigr:TIGR00484 EF-G
InterPro IPR005517 Translation elongation factor EFG/EF2, domain IV; HMMPfam:PF03764 EFG_IV
InterPro IPR005517 Translation elongation factor EFG/EF2, domain IV; HMMSmart:SM00889 EFG_IV
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EFG_III_V
Blast Hits [TAIR_pep] AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding | chr1:23233622-23236321 REVERSE
Blast Hits [nr] ref|YP_001015770.1| elongation factor G [Prochlorococcus marinus str. NATL1A] gi|166220159|sp|A2C4U6.1|EFG_PROM1 RecName: Full=Elongation factor G; Short=EF-G gi|123961723|gb|ABM76506.1| Elongation factor G [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] EFG_PROM1 (sp|A2C4U6) Elongation factor G OS=Prochlorococcus marinus (strain NATL1A) GN=fusA PE=3 SV=1
PMN2A_1100 Gene product peptide chain release factor 1
GO term Molecular Function: translation release factor activity (GO:0003747)
GO term Molecular Function: translation release factor activity, codon specific (GO:0016149)
InterPro IPR000352 Class I peptide chain release factor; HMMPfam:PF00472 RF-1
InterPro IPR000352 Class I peptide chain release factor; PatternScan:PS00745 RF_PROK_I
InterPro IPR004373 Peptide chain release factor 1; HMMTigr:TIGR00019 prfA
InterPro IPR005139 Peptide chain release factor; HMMPfam:PF03462 PCRF
Blast Hits [TAIR_pep] AT3G62910.1 | Symbols: APG3 | APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific | chr3:23257661-23260386 REVERSE
Blast Hits [nr] ref|YP_001015795.1| peptide chain release factor 1 [Prochlorococcus marinus str. NATL1A] gi|229470356|sp|A2C4X1.1|RF1_PROM1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|123961748|gb|ABM76531.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RF1_PROM1 (sp|A2C4X1) Peptide chain release factor 1 OS=Prochlorococcus marinus (strain NATL1A) GN=prfA PE=3 SV=1
PMN2A_1129 InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
PMN2A_1141 InterPro IPR009036 Molybdenum cofactor biosynthesis, MoeB; superfamily:SSF69572 MoeB
Blast Hits [TAIR_pep] AT5G55130.1 | Symbols: CNX5, SIR1 | CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor sulfurase | chr5:22373374-22376028 REVERSE
PMN2A_1207 Gene product type II alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor [Prochlorococcus marinus str. NATL1A] gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RPOD3_SYNE7 (sp|Q31QG5) RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3 PE=3 SV=1
PMN2A_1215 Gene product translation initiation factor IF-3
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR001288 Translation initiation factor 3; HMMPanther:PTHR10938 IF3
InterPro IPR001288 Translation initiation factor 3; HMMTigr:TIGR00168 infC
InterPro IPR019813 Translation initiation factor 3, conserved site; PatternScan:PS00938 IF3
InterPro IPR019814 Translation initiation factor 3, N-terminal; Gene3D:G3DSA:3.10.20.80 IF3
InterPro IPR019814 Translation initiation factor 3, N-terminal; HMMPfam:PF05198 IF3_N
InterPro IPR019814 Translation initiation factor 3, N-terminal; superfamily:SSF54364 IF3
InterPro IPR019815 Translation initiation factor 3, C-terminal; Gene3D:G3DSA:3.30.110.10 IF3
InterPro IPR019815 Translation initiation factor 3, C-terminal; HMMPfam:PF00707 IF3_C
InterPro IPR019815 Translation initiation factor 3, C-terminal; superfamily:SSF55200 IF3
Blast Hits [TAIR_pep] AT2G24060.1 | Symbols: | translation initiation factor 3 (IF-3) family protein | chr2:10229453-10231390 FORWARD
Blast Hits [nr] ref|YP_001015910.1| translation initiation factor IF-3 [Prochlorococcus marinus str. NATL1A] gi|166198963|sp|A2C586.1|IF3_PROM1 RecName: Full=Translation initiation factor IF-3 gi|123961863|gb|ABM76646.1| Translation Initiation factor 3 [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] IF3_PROM1 (sp|A2C586) Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL1A) GN=infC PE=3 SV=1
PMN2A_1253 Gene product trigger factor
InterPro IPR005215 Trigger factor; HMMPIR:PIRSF003095 Trigger_factor
InterPro IPR005215 Trigger factor; HMMTigr:TIGR00115 tig
InterPro IPR008880 Trigger factor, C-terminal, bacterial; HMMPfam:PF05698 Trigger_C
InterPro IPR008880 Trigger factor, C-terminal, bacterial; superfamily:SSF109998 Trigger_fac_C_bac
InterPro IPR008881 Trigger factor, ribosome-binding, bacterial; Gene3D:G3DSA:3.30.70.1050 Trigger_fac_ribosome-bd_bac
InterPro IPR008881 Trigger factor, ribosome-binding, bacterial; HMMPfam:PF05697 Trigger_N
InterPro IPR008881 Trigger factor, ribosome-binding, bacterial; superfamily:SSF102735 Trigger_fac_ribosome-bd_bac
Blast Hits [TAIR_pep] AT5G55220.1 | Symbols: | trigger factor type chaperone family protein | chr5:22397677-22400678 FORWARD
Blast Hits [nr] ref|YP_001015944.1| trigger factor [Prochlorococcus marinus str. NATL1A] gi|166229915|sp|A2C5C0.1|TIG_PROM1 RecName: Full=Trigger factor; Short=TF gi|123961897|gb|ABM76680.1| FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] TIG_PROM1 (sp|A2C5C0) Trigger factor OS=Prochlorococcus marinus (strain NATL1A) GN=tig PE=3 SV=1
PMN2A_1305 Gene product type II alternative RNA polymerase sigma factor, sigma-70 family
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00716 SIGMA70_2
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr2:15537502-15540016 REVERSE
Blast Hits [nr] ref|YP_001015998.1| type II alternative sigma-70 family RNA polymerase sigma factor [Prochlorococcus marinus str. NATL1A] gi|123961951|gb|ABM76734.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RPOD4_SYNE7 (sp|Q31QR8) RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4 PE=3 SV=1
PMN2A_1316 InterPro IPR014717 Translation elongation factor EF1B/ribosomal protein S6; Gene3D:G3DSA:3.30.70.60 Transl_elong_EF1B/rib_con
PMN2A_1336 GO term Molecular Function: transcription termination factor activity (GO:0003715)
InterPro IPR011605 NusB antitermination factor; HMMTigr:TIGR01951 nusB
PMN2A_1343 GO term Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774)
InterPro IPR000740 GrpE nucleotide exchange factor; FPrintScan:PR00773 GRPEPROTEIN
InterPro IPR000740 GrpE nucleotide exchange factor; HMMPanther:PTHR21237 GrpE
InterPro IPR000740 GrpE nucleotide exchange factor; HMMPfam:PF01025 GrpE
InterPro IPR000740 GrpE nucleotide exchange factor; PatternScan:PS01071 GRPE
InterPro IPR009012 GrpE nucleotide exchange factor, head; Gene3D:G3DSA:2.30.22.10 GrpE_head
InterPro IPR009012 GrpE nucleotide exchange factor, head; superfamily:SSF51064 GrpE_head
InterPro IPR013805 GrpE nucleotide exchange factor, coiled-coil; Gene3D:G3DSA:3.90.20.20 GrpE_coiled_coil
Blast Hits [TAIR_pep] AT5G17710.1 | Symbols: EMB1241 | EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization | chr5:5839560-5841639 REVERSE
Blast Hits [nr] ref|YP_001013844.1| heat shock protein GrpE [Prochlorococcus marinus str. NATL1A] gi|166215276|sp|A2BZB9.1|GRPE_PROM1 RecName: Full=Protein grpE; AltName: Full=HSP-70 cofactor gi|123959796|gb|ABM74579.1| Heat shock protein GrpE [Prochlorococcus marinus str. NATL1A]
PMN2A_1353 Gene product elongation factor P
GO term Molecular Function: translation elongation factor activity (GO:0003746)
InterPro IPR001059 Translation elongation factor P/YeiP, central; HMMPfam:PF01132 EFP
InterPro IPR011768 Translation elongation factor P; HMMTigr:TIGR00038 efp
InterPro IPR013185 Translation elongation factor, KOW-like; HMMPfam:PF08207 EFP_N
InterPro IPR013852 Translation elongation factor P/YeiP, conserved site; PatternScan:PS01275 EFP
InterPro IPR015365 Elongation factor P, C-terminal; HMMPfam:PF09285 Elong-fact-P_C
InterPro IPR015365 Elongation factor P, C-terminal; HMMSmart:SM00841 Elong-fact-P_C
InterPro IPR020599 Translation elongation factor P/YeiP; HMMPIR:PIRSF005901 EF-P
Blast Hits [TAIR_pep] AT3G08740.1 | Symbols: | elongation factor P (EF-P) family protein | chr3:2654788-2656154 REVERSE
Blast Hits [nr] ref|YP_001013854.1| elongation factor P [Prochlorococcus marinus str. NATL1A] gi|166220260|sp|A2BZC9.1|EFP_PROM1 RecName: Full=Elongation factor P; Short=EF-P gi|123959806|gb|ABM74589.1| Elongation factor P (EF-P) [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] EFP_PROM1 (sp|A2BZC9) Elongation factor P OS=Prochlorococcus marinus (strain NATL1A) GN=efp PE=3 SV=1
PMN2A_1409 InterPro IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical; superfamily:SSF47794 Rad51_N
PMN2A_1444 Gene product bordetella pertussis Bvg accessory factor
InterPro IPR004619 Bordetella pertussis Bvg accessory factor; HMMPfam:PF03309 Bvg_acc_factor
InterPro IPR004619 Bordetella pertussis Bvg accessory factor; HMMTigr:TIGR00671 baf
PMN2A_1480 Gene product ribosome-binding factor A
InterPro IPR000238 Ribosome-binding factor A; BlastProDom:PD007327 Rib_bd_factA
InterPro IPR000238 Ribosome-binding factor A; HMMPfam:PF02033 RBFA
InterPro IPR000238 Ribosome-binding factor A; HMMTigr:TIGR00082 rbfA
InterPro IPR000238 Ribosome-binding factor A; superfamily:SSF89919 Rib_bd_factA
InterPro IPR020053 Ribosome-binding factor A, conserved site; PatternScan:PS01319 RBFA
Blast Hits [TAIR_pep] AT4G34730.1 | Symbols: | ribosome-binding factor A family protein | chr4:16570019-16571274 REVERSE
Blast Hits [nr] ref|YP_001014014.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL1A] gi|166219387|sp|A2BZT9.1|RBFA_PROM1 RecName: Full=Ribosome-binding factor A gi|123959966|gb|ABM74749.1| Ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RBFA_PROM1 (sp|A2BZT9) Ribosome-binding factor A OS=Prochlorococcus marinus (strain NATL1A) GN=rbfA PE=3 SV=1
PMN2A_1548 Gene product peptide chain release factor 2
GO term Molecular Function: translation release factor activity (GO:0003747)
GO term Molecular Function: translation release factor activity, codon specific (GO:0016149)
InterPro IPR000352 Class I peptide chain release factor; HMMPfam:PF00472 RF-1
InterPro IPR000352 Class I peptide chain release factor; PatternScan:PS00745 RF_PROK_I
InterPro IPR004374 Peptide chain release factor 2; HMMPanther:PTHR11075:SF6 PrfB
InterPro IPR004374 Peptide chain release factor 2; HMMTigr:TIGR00020 prfB
InterPro IPR005139 Peptide chain release factor; HMMPfam:PF03462 PCRF
Blast Hits [TAIR_pep] AT5G36170.1 | Symbols: HCF109, ATPRFB | HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific | chr5:14236083-14237974 REVERSE
Blast Hits [nr] ref|YP_001014085.1| peptide chain release factor 2 [Prochlorococcus marinus str. NATL1A] gi|123960037|gb|ABM74820.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RF2_SYNPX (sp|Q7U3W6) Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1
PMN2A_1581 InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; HMMPfam:PF01740 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; ProfileScan:PS50801 STAS
InterPro IPR002645 Sulphate transporter/antisigma-factor antagonist STAS; superfamily:SSF52091 STAS
PMN2A_1532 Gene product translation initiation factor 1 (eIF-1/SUI1)
GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR001950 Translation initiation factor SUI1; HMMPfam:PF01253 SUI1
InterPro IPR001950 Translation initiation factor SUI1; ProfileScan:PS50296 SUI1
InterPro IPR001950 Translation initiation factor SUI1; superfamily:SSF55159 eIF1-like
InterPro IPR017228 Translation initiation factor 1, prokaryotic; HMMPIR:PIRSF037511 Translation initiation factor 1, prokaryotic type
Blast Hits [TAIR_pep] AT5G54940.2 | Symbols: | eukaryotic translation initiation factor SUI1, putative | chr5:22308420-22308758 REVERSE
Blast Hits [nr] ref|YP_001018702.1| translation initiation factor SUI1 [Prochlorococcus marinus str. MIT 9303] gi|123964681|gb|ABM79437.1| Translation initiation factor SUI1 [Prochlorococcus marinus str. MIT 9303]
PMN2A_1654 InterPro IPR002035 von Willebrand factor, type A; HMMPfam:PF00092 VWA
InterPro IPR002035 von Willebrand factor, type A; HMMSmart:SM00327 VWA
InterPro IPR002035 von Willebrand factor, type A; ProfileScan:PS50234 VWFA
PMN2A_1662 Gene product photosystem II stability/assembly factor
InterPro IPR016705 Photosystem II stability/assembly factor, HCF136; HMMPIR:PIRSF017875 PSII_HCF136
Blast Hits [nr] ref|YP_001014205.1| Ycf48-like protein [Prochlorococcus marinus str. NATL1A] gi|123960157|gb|ABM74940.1| Uncharacterized protein plant photosystem II stability/assembly factor-like protein [Prochlorococcus marinus str. NATL1A]
PMN2A_1695 InterPro IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific; HMMTigr:TIGR03534 RF_mod_HemK
PMN2A_1697 Gene product cell division topological specificity factor MinE
InterPro IPR005527 Septum formation topological specificity factor MinE; HMMPfam:PF03776 MinE
InterPro IPR005527 Septum formation topological specificity factor MinE; HMMTigr:TIGR01215 minE
Blast Hits [nr] ref|YP_001014241.1| septum site-determining protein MinE [Prochlorococcus marinus str. NATL1A] gi|156632558|sp|A2C0G6.1|MINE_PROM1 RecName: Full=Cell division topological specificity factor gi|123960193|gb|ABM74976.1| possible septum site-determining protein MinE [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] MINE_PROM1 (sp|A2C0G6) Cell division topological specificity factor OS=Prochlorococcus marinus (strain NATL1A) GN=minE PE=3 SV=1
PMN2A_1754 InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; Gene3D:G3DSA:3.30.70.240 Transl_elong_EFG/EF2_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMPfam:PF00679 EFG_C
InterPro IPR000640 Translation elongation factor EFG/EF2, C-terminal; HMMSmart:SM00838 EFG_C
InterPro IPR000795 Protein synthesis factor, GTP-binding; FPrintScan:PR00315 ELONGATNFCT
InterPro IPR000795 Protein synthesis factor, GTP-binding; HMMPfam:PF00009 GTP_EFTU
InterPro IPR000795 Protein synthesis factor, GTP-binding; PatternScan:PS00301 EFACTOR_GTP
InterPro IPR004161 Translation elongation factor EFTu/EF1A, domain 2; HMMPfam:PF03144 GTP_EFTU_D2
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel; superfamily:SSF50447 Translat_factor
InterPro IPR009022 Elongation factor G/III/V; superfamily:SSF54980 EFG_III_V
PMN2A_1829 Gene product RNA polymerase sigma factor RpoD
GO term Molecular Function: sigma factor activity (GO:0016987)
GO term Molecular Function: transcription factor activity (GO:0003700)
InterPro IPR000943 RNA polymerase sigma-70 factor; FPrintScan:PR00046 SIGMA70FCT
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00715 SIGMA70_1
InterPro IPR000943 RNA polymerase sigma-70 factor; PatternScan:PS00716 SIGMA70_2
InterPro IPR012760 RNA polymerase sigma factor RpoD, C-terminal; HMMTigr:TIGR02393 RpoD_Cterm
InterPro IPR013324 RNA polymerase sigma factor, region 3/4; superfamily:SSF88659 Sigma_r3_r4
InterPro IPR013325 RNA polymerase sigma factor, region 2; superfamily:SSF88946 Sigma_r2
InterPro IPR017848 RNA polymerase sigma factor, RpoD-like, cyanobacteria; HMMTigr:TIGR02997 Sig70-cyanoRpoD
Blast Hits [TAIR_pep] AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor | chr1:2703461-2706696 FORWARD
Blast Hits [nr] ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. NATL1A] gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RPOD_ANASP (sp|P26683) RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
PMN2A_1853 Gene product ribosome recycling factor
InterPro IPR002661 Ribosome recycling factor; HMMPanther:PTHR20982 Ribosome_recyc_fac
InterPro IPR002661 Ribosome recycling factor; HMMPfam:PF01765 RRF
InterPro IPR002661 Ribosome recycling factor; HMMTigr:TIGR00496 frr
InterPro IPR002661 Ribosome recycling factor; superfamily:SSF55194 Ribosome_recyc_fac
InterPro IPR015998 Ribosome recycling factor, bacterial-like; HMMPanther:PTHR20982:SF3 RRF
Blast Hits [TAIR_pep] AT3G63190.1 | Symbols: RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) | chr3:23342861-23344640 REVERSE
Blast Hits [nr] ref|YP_001014405.1| ribosome recycling factor [Prochlorococcus marinus str. NATL1A] gi|166230815|sp|A2C0Y0.1|RRF_PROM1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gi|123960357|gb|ABM75140.1| Ribosome recycling factor [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RRF_PROM1 (sp|A2C0Y0) Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL1A) GN=frr PE=3 SV=1
PMN2A_1976 GO term Molecular Function: translation initiation factor activity (GO:0003743)
InterPro IPR006847 Translation initiation factor IF-2, N-terminal; HMMPfam:PF04760 IF2_N
Blast Hits [sprot] IF2_DESDG (sp|Q30WJ0) Translation initiation factor IF-2 OS=Desulfovibrio desulfuricans (strain G20) GN=infB PE=3 SV=1
PMN2A_1824 InterPro IPR001533 Transcriptional coactivator/pterin dehydratase; superfamily:SSF55248 Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
PMN2A_1441 Gene product recombination factor protein RarA/unknown domain fusion protein
Blast Hits [nr] ref|YP_001013971.1| fused recombination factor protein RarA/unknown domain-containing protein [Prochlorococcus marinus str. NATL1A] gi|123959923|gb|ABM74706.1| Hypothetical protein NATL1_01421 [Prochlorococcus marinus str. NATL1A]
PMN2A_1627 Gene product virulence factor MVIN-like
Blast Hits [nr] ref|YP_001014168.1| hypothetical protein NATL1_03391 [Prochlorococcus marinus str. NATL1A] gi|123960120|gb|ABM74903.1| Uncharacterized membrane protein, putative virulence factor [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] MVIN_SYNY3 (sp|Q55179) Virulence factor mviN homolog OS=Synechocystis sp. (strain PCC 6803) GN=mviN PE=3 SV=1
PMN2A_1696 Gene product putative translation factor (SUA5)
Blast Hits [nr] ref|YP_001014239.1| putative translation factor (SUA5) [Prochlorococcus marinus str. NATL1A] gi|123960191|gb|ABM74974.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RIMN_SHEFN (sp|Q08A23) Putative ribosome maturation factor rimN OS=Shewanella frigidimarina (strain NCIMB 400) GN=rimN PE=3 SV=1
PMN2A_1723 Gene product precorrin-2 C20-methyltransferase / cobalt-factor II C20-methyltransferase
PMN2A_0448 Gene product possible elongation factor Tu domain 2
PMN2A_0077 GO term Molecular Function: transcription factor activity (GO:0003700)
Blast Hits [TAIR_pep] AT4G29940.1 | Symbols: PRHA | PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); protein binding / sequence-specific DNA binding / transcription activator/ transcription factor | chr4:14648346-14652710 REVERSE
PMN2A_0214 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_0345 GO term Biological Process: cofactor biosynthetic process (GO:0051188)
PMN2A_0435 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_0446 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_0655 GO term Biological Process: cofactor metabolic process (GO:0051186)
PMN2A_0926 GO term Molecular Function: cofactor binding (GO:0048037)
PMN2A_0984 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
PMN2A_0983 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
PMN2A_0985 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
PMN2A_0986 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
PMN2A_0987 GO term Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263)
PMN2A_1033 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_1185 GO term Molecular Function: cofactor binding (GO:0048037)
Blast Hits [TAIR_pep] AT2G44620.1 | Symbols: MTACP-1, MTACP1 | MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier/ cofactor binding / phosphopantetheine binding | chr2:18414320-18415065 FORWARD
PMN2A_1216 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_1513 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_1520 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_1537 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_1612 GO term Molecular Function: transcription factor activity (GO:0003700)
PMN2A_1623 GO term Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
Blast Hits [nr] ref|YP_001014164.1| molybdenum cofactor biosynthesis protein [Prochlorococcus marinus str. NATL1A] gi|167008608|sp|A2C089.1|CINAL_PROM1 RecName: Full=CinA-like protein gi|123960116|gb|ABM74899.1| Molybdenum cofactor biosynthesis protein [Prochlorococcus marinus str. NATL1A]
PMN2A_0113 Blast Hits [nr] ref|YP_001014562.1| putative transcripton factor [Prochlorococcus marinus str. NATL1A] gi|123960514|gb|ABM75297.1| putative transcripton factor [Prochlorococcus marinus str. NATL1A]
PMN2A_0966 Blast Hits [nr] ref|YP_001015654.1| phosphoglyceromutase [Prochlorococcus marinus str. NATL1A] gi|166991394|sp|A2C4I0.1|GPMI_PROM1 RecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Short=Phosphoglyceromutase; Short=BPG-independent PGAM; Short=iPGM gi|123961607|gb|ABM76390.1| Phosphoglycerate mutase, co-factor-independent (iPGM) [Prochlorococcus marinus str. NATL1A]
PMN2A_1181 Blast Hits [nr] ref|YP_001015876.1| 16S rRNA-processing protein [Prochlorococcus marinus str. NATL1A] gi|166226463|sp|A2C552.1|RIMM_PROM1 RecName: Full=Ribosome maturation factor rimM gi|123961829|gb|ABM76612.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] RIMM_PROM1 (sp|A2C552) Ribosome maturation factor rimM OS=Prochlorococcus marinus (strain NATL1A) GN=rimM PE=3 SV=1
PMN2A_1830 Blast Hits [nr] ref|YP_001014382.1| primosomal protein N' (replication factor Y) [Prochlorococcus marinus str. NATL1A] gi|123960334|gb|ABM75117.1| primosomal protein N' (replication factor Y) [Prochlorococcus marinus str. NATL1A]
PMN2A_0035 Blast Hits [sprot] IF2_XANOR (sp|Q5GXU9) Translation initiation factor IF-2 OS=Xanthomonas oryzae pv. oryzae GN=infB PE=3 SV=2
PMN2A_0099 Blast Hits [sprot] TOF1_CHAGB (sp|Q2HBI0) Topoisomerase 1-associated factor 1 OS=Chaetomium globosum GN=TOF1 PE=3 SV=1
PMN2A_0133 Blast Hits [TAIR_pep] AT4G34530.1 | Symbols: CIB1 | CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1); DNA binding / transcription factor | chr4:16498466-16499946 FORWARD
Blast Hits [sprot] EIF3A_CANAL (sp|Q59PL9) Eukaryotic translation initiation factor 3 subunit A OS=Candida albicans GN=TIF32 PE=3 SV=2
PMN2A_0155 Blast Hits [sprot] ACE1_TRIRE (sp|Q9P8W3) Zinc finger transcription factor ace1 OS=Trichoderma reesei GN=ace1 PE=4 SV=1
PMN2A_0363 Blast Hits [sprot] IF2_ACIC1 (sp|A0LV27) Translation initiation factor IF-2 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=infB PE=3 SV=1
PMN2A_0395 Blast Hits [sprot] CSGA_MYXXA (sp|P21158) C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1
PMN2A_0438 Blast Hits [sprot] PEX6_ASHGO (sp|Q74Z13) Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1
PMN2A_0453 Blast Hits [sprot] RFCL_SULAC (sp|Q4JAB1) Replication factor C large subunit OS=Sulfolobus acidocaldarius GN=rfcL PE=3 SV=1
PMN2A_0459 Blast Hits [sprot] SPT6_NEUCR (sp|Q8NIV6) Transcription elongation factor spt-6 OS=Neurospora crassa GN=spt-6 PE=3 SV=1
PMN2A_0464 Blast Hits [TAIR_pep] AT4G36930.1 | Symbols: SPT | SPT (SPATULA); DNA binding / transcription factor | chr4:17414167-17415945 FORWARD
Blast Hits [sprot] SPT_ARATH (sp|Q9FUA4) Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1
PMN2A_0633 Blast Hits [TAIR_pep] AT1G04950.3 | Symbols: TAFII59 | TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor | chr1:1403606-1407184 REVERSE
Blast Hits [sprot] TIG_HELPG (sp|B5Z7F7) Trigger factor OS=Helicobacter pylori (strain G27) GN=tig PE=3 SV=1
PMN2A_0672 Blast Hits [sprot] EFTU_SACEN (sp|A4FPM7) Elongation factor Tu OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tuf PE=3 SV=1
PMN2A_0793 Blast Hits [sprot] NTRK3_RAT (sp|Q03351) NT-3 growth factor receptor OS=Rattus norvegicus GN=Ntrk3 PE=1 SV=2
PMN2A_0822 Blast Hits [sprot] CWC24_SCHPO (sp|Q9P6R8) Pre-mRNA-splicing factor cwc24 OS=Schizosaccharomyces pombe GN=cwf24 PE=1 SV=1
PMN2A_0827 Blast Hits [sprot] CYC2_YEAST (sp|P38909) Cytochrome c mitochondrial import factor CYC2 OS=Saccharomyces cerevisiae GN=CYC2 PE=1 SV=3
PMN2A_0896 Blast Hits [sprot] RIMM_CLOPE (sp|Q8XJP6) Ribosome maturation factor rimM OS=Clostridium perfringens GN=rimM PE=3 SV=1
PMN2A_1022 Blast Hits [sprot] RIMP_PROMT (sp|Q46J16) Ribosome maturation factor rimP OS=Prochlorococcus marinus (strain NATL2A) GN=rimP PE=3 SV=2
PMN2A_1140 Blast Hits [sprot] EFP_SACD2 (sp|Q21LT5) Elongation factor P OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=efp PE=3 SV=1
PMN2A_1238 Blast Hits [sprot] MOCO1_CULQU (sp|B0WSW8) Molybdenum cofactor sulfurase 1 OS=Culex quinquefasciatus GN=mal1 PE=3 SV=1
PMN2A_1371 Blast Hits [sprot] F12AI_BOVIN (sp|P50448) Factor XIIa inhibitor OS=Bos taurus PE=1 SV=1
PMN2A_1408 Blast Hits [sprot] CSGA_MYXXA (sp|P21158) C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1
PMN2A_1587 Blast Hits [sprot] APAF_HUMAN (sp|O14727) Apoptotic protease-activating factor 1 OS=Homo sapiens GN=APAF1 PE=1 SV=2
PMN2A_1843 Blast Hits [sprot] CWC22_SCHPO (sp|Q9P6R9) Pre-mRNA-splicing factor cwc22 OS=Schizosaccharomyces pombe GN=cwf22 PE=1 SV=3
PMN2A_1912 Blast Hits [sprot] RF2_SYNPX (sp|Q7U3W6) Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1
PMN2A_1970 Blast Hits [sprot] TEANC_MOUSE (sp|Q3US16) Transcription elongation factor A N-terminal and central domain-containing protein OS=Mus musculus GN=Tceanc PE=2 SV=1
PMN2A_2060 Blast Hits [sprot] E2F7_MOUSE (sp|Q6S7F2) Transcription factor E2F7 OS=Mus musculus GN=E2f7 PE=2 SV=1
PMN2A_0012 Blast Hits [TAIR_pep] AT1G75510.1 | Symbols: | transcription initiation factor IIF beta subunit (TFIIF-beta) family protein | chr1:28347254-28348629 REVERSE
PMN2A_0037 Blast Hits [TAIR_pep] AT1G56380.2 | Symbols: | mitochondrial transcription termination factor family protein / mTERF family protein | chr1:21101327-21102701 FORWARD
PMN2A_0078 Blast Hits [TAIR_pep] AT2G31955.2 | Symbols: CNX2 | CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic | chr2:13584635-13586484 REVERSE
PMN2A_0272 Blast Hits [TAIR_pep] AT2G18720.1 | Symbols: | GTP binding / GTPase/ serine-type peptidase/ translation factor, nucleic acid binding | chr2:8114920-8116759 REVERSE
PMN2A_0311 Blast Hits [TAIR_pep] AT2G05830.3 | Symbols: | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein | chr2:2230057-2231839 FORWARD
PMN2A_0344 Blast Hits [TAIR_pep] AT1G59840.2 | Symbols: CCB4 | CCB4 (COFACTOR ASSEMBLY OF COMPLEX C) | chr1:22026569-22028174 FORWARD
PMN2A_0347 Blast Hits [TAIR_pep] AT3G10490.2 | Symbols: anac052 | anac052 (Arabidopsis NAC domain containing protein 52); transcription factor | chr3:3268075-3270608 FORWARD
PMN2A_0386 Blast Hits [TAIR_pep] AT1G54590.1 | Symbols: | splicing factor Prp18 family protein | chr1:20391560-20392434 REVERSE
PMN2A_0436 Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
PMN2A_0450 Blast Hits [TAIR_pep] AT5G38140.1 | Symbols: NF-YC12 | NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12); DNA binding / transcription factor | chr5:15220377-15222025 REVERSE
PMN2A_0460 Blast Hits [TAIR_pep] AT3G10000.1 | Symbols: EDA31 | EDA31 (embryo sac development arrest 31); transcription factor | chr3:3076874-3078907 FORWARD
PMN2A_0461 Blast Hits [TAIR_pep] AT1G06150.1 | Symbols: | transcription factor | chr1:1869228-1873194 REVERSE
PMN2A_0465 Blast Hits [TAIR_pep] AT3G25790.1 | Symbols: | myb family transcription factor | chr3:9413196-9414951 FORWARD
PMN2A_0516 Blast Hits [TAIR_pep] AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor, transesterification mechanism | chr1:8312199-8314740 REVERSE
PMN2A_0540 Blast Hits [TAIR_pep] AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator | chr1:3077216-3079367 FORWARD
PMN2A_0543 Blast Hits [TAIR_pep] AT1G04950.3 | Symbols: TAFII59 | TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor | chr1:1403606-1407184 REVERSE
PMN2A_0565 Blast Hits [TAIR_pep] AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor | chr1:465933-467685 REVERSE
PMN2A_0566 Blast Hits [TAIR_pep] AT4G01680.2 | Symbols: MYB55 | MYB55 (myb domain protein 55); DNA binding / transcription factor | chr4:716222-717415 REVERSE
PMN2A_0602 Blast Hits [TAIR_pep] AT4G17600.1 | Symbols: LIL3:1 | LIL3:1; transcription factor | chr4:9803759-9804714 FORWARD
PMN2A_0627 Blast Hits [TAIR_pep] AT3G09600.2 | Symbols: | myb family transcription factor | chr3:2946459-2948200 FORWARD
PMN2A_0637 Blast Hits [TAIR_pep] AT1G67710.1 | Symbols: ARR11 | ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator | chr1:25376994-25378905 REVERSE
PMN2A_0710 Blast Hits [TAIR_pep] AT3G45990.1 | Symbols: | actin-depolymerizing factor, putative | chr3:16900778-16904136 REVERSE
PMN2A_0789 Blast Hits [TAIR_pep] AT3G12720.1 | Symbols: ATY53, ATMYB67 | ATMYB67 (MYB DOMAIN PROTEIN 67); DNA binding / transcription factor | chr3:4043407-4044522 REVERSE
PMN2A_0861 Blast Hits [TAIR_pep] AT5G40330.1 | Symbols: MYB23, ATMYB23, ATMYBRTF | MYB23 (MYB DOMAIN PROTEIN 23); DNA binding / protein binding / transcription factor | chr5:16127849-16129468 FORWARD
PMN2A_0883 Blast Hits [TAIR_pep] AT3G14980.1 | Symbols: | PHD finger transcription factor, putative | chr3:5039931-5044811 REVERSE
PMN2A_0927 Blast Hits [TAIR_pep] AT4G37650.1 | Symbols: SHR, SGR7 | SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor | chr4:17691871-17693466 FORWARD
PMN2A_0957 Blast Hits [TAIR_pep] AT3G07610.2 | Symbols: IBM1 | IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor | chr3:2426148-2429358 FORWARD
PMN2A_1156 Blast Hits [TAIR_pep] AT3G26710.1 | Symbols: CCB1 | CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) | chr3:9813550-9814606 FORWARD
PMN2A_1196 Blast Hits [TAIR_pep] AT1G67710.1 | Symbols: ARR11 | ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator | chr1:25376994-25378905 REVERSE
PMN2A_1223 Blast Hits [TAIR_pep] AT5G11860.4 | Symbols: | NLI interacting factor (NIF) family protein | chr5:3822024-3823395 REVERSE
PMN2A_1248 Blast Hits [TAIR_pep] AT4G04450.1 | Symbols: WRKY42, AtWRKY42 | WRKY42; transcription factor | chr4:2218379-2221113 FORWARD
PMN2A_1279 Blast Hits [TAIR_pep] AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding | chr5:7280632-7287037 REVERSE
PMN2A_1293 Blast Hits [TAIR_pep] AT4G02020.1 | Symbols: EZA1, SWN, SDG10 | SWN (SWINGER); transcription factor | chr4:886693-891743 FORWARD
PMN2A_1369 Blast Hits [TAIR_pep] AT4G18450.1 | Symbols: | ethylene-responsive factor, putative | chr4:10190250-10191161 REVERSE
PMN2A_1373 Blast Hits [TAIR_pep] AT5G27610.1 | Symbols: ATALY1, ALY1 | DNA binding / transcription factor | chr5:9764852-9769706 FORWARD
PMN2A_1374 Blast Hits [TAIR_pep] AT1G31150.1 | Symbols: | transcription factor | chr1:11120097-11122412 FORWARD
PMN2A_1397 Blast Hits [TAIR_pep] AT1G58220.1 | Symbols: | myb family transcription factor | chr1:21558388-21562669 REVERSE
PMN2A_1424 Blast Hits [TAIR_pep] AT5G36120.1 | Symbols: CCB3 | CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) | chr5:14198679-14199203 REVERSE
PMN2A_1500 Blast Hits [TAIR_pep] AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator | chr2:333041-334514 FORWARD
PMN2A_1540 Blast Hits [TAIR_pep] ATCG01110.1 | Symbols: NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. | chrC:122011-123192 REVERSE
PMN2A_1636 Blast Hits [TAIR_pep] AT4G09620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); Has 120 Blast hits to 97 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:6077122-6078899 REVERSE
PMN2A_1675 Blast Hits [TAIR_pep] AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor | chr1:26990777-26993447 REVERSE
PMN2A_1682 Blast Hits [TAIR_pep] AT1G32510.1 | Symbols: anac011 | anac011 (Arabidopsis NAC domain containing protein 11); transcription factor | chr1:11757000-11758118 FORWARD
PMN2A_1718 Blast Hits [TAIR_pep] AT4G17600.1 | Symbols: LIL3:1 | LIL3:1; transcription factor | chr4:9803759-9804714 FORWARD
PMN2A_1722 Blast Hits [TAIR_pep] AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding | chr1:23233622-23236321 REVERSE
PMN2A_1725 Blast Hits [TAIR_pep] AT5G38640.1 | Symbols: | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein | chr5:15468020-15470674 REVERSE
PMN2A_1733 Blast Hits [TAIR_pep] AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor | chr5:24910859-24914680 FORWARD
PMN2A_1928 Blast Hits [TAIR_pep] AT5G59340.1 | Symbols: WOX2 | WOX2 (WUSCHEL RELATED HOMEOBOX 2); transcription factor | chr5:23933408-23934627 REVERSE
PMN2A_1967 Blast Hits [TAIR_pep] AT5G48670.1 | Symbols: FEM111, AGL80 | AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor | chr5:19738825-19739790 REVERSE
PMN2A_2003 Blast Hits [TAIR_pep] AT1G32870.1 | Symbols: ANAC13, ANAC013 | ANAC13 (Arabidopsis thaliana NAC domain protein 13); transcription factor | chr1:11911745-11913692 FORWARD
PMN2A_2046 Blast Hits [TAIR_pep] AT1G66350.1 | Symbols: RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor | chr1:24748327-24749862 FORWARD
PMN2A_2066 Blast Hits [TAIR_pep] AT2G16380.1 | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr2:7085972-7088858 FORWARD
PMN2A_2072 Blast Hits [TAIR_pep] AT5G19900.1 | Symbols: | PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE
PMN2A_2095 Blast Hits [TAIR_pep] AT1G51700.1 | Symbols: ADOF1 | ADOF1; DNA binding / transcription factor | chr1:19174266-19174850 FORWARD
PMN2A_2097 Blast Hits [TAIR_pep] AT5G13650.2 | Symbols: | elongation factor family protein | chr5:4397821-4402364 FORWARD
PMN2A_2101 Blast Hits [TAIR_pep] AT3G44290.1 | Symbols: anac060 | anac060 (Arabidopsis NAC domain containing protein 60); transcription factor | chr3:15972909-15975019 REVERSE
PMN2A_2172 Blast Hits [TAIR_pep] AT1G03840.1 | Symbols: MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding | chr1:967596-970058 REVERSE
PMN2A_2174 Blast Hits [TAIR_pep] AT5G44180.1 | Symbols: | homeobox transcription factor, putative | chr5:17783172-17789872 FORWARD
PMN2A_2179 Blast Hits [TAIR_pep] AT3G18010.1 | Symbols: WOX1 | WOX1 (WUSCHEL related homeobox 1); transcription factor | chr3:6161155-6163183 REVERSE

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ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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