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Full-text search result: 143 genes by "chloroplast" TXT SET

Prochlorococcus marinus str. NATL2A (143 genes ) TXT SET

PMN2A_0340 InterPro NULL NULL; HMMPanther:PTHR13479:SF17 CHLOROPLAST 30S RIBOSOMAL PROTEIN S18
Blast Hits [TAIR_pep] ATCG00650.1 | Symbols: RPS18 | chloroplast-encoded ribosomal protein S18 | chrC:67917-68222 FORWARD
PMN2A_0984 InterPro IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast; HMMPfam:PF00430 ATP-synt_B
PMN2A_0983 InterPro IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast; HMMPfam:PF00430 ATP-synt_B
PMN2A_0985 InterPro IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast; HMMTigr:TIGR01260 ATP_synt_c: ATP synthase F0, C subunit
PMN2A_1124 InterPro IPR005727 Ribosomal protein L22, bacterial-type; HMMPanther:PTHR13501 CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED
Blast Hits [TAIR_pep] ATCG00810.1 | Symbols: RPL22 | encodes a chloroplast ribosomal protein L22, a constituent of the large subunit of the ribosomal complex | chrC:83467-83949 REVERSE
Blast Hits [pln_est] dbj|EC731703|EC731703 MVE00004673 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to 50S ribosomal protein L2, Mesostigma chloroplast genome, mRNA sequence.
PMN2A_1272 InterPro IPR020594 Ribosomal protein L9, bacteria/chloroplast; HMMTigr:TIGR00158 L9
PMN2A_1506 InterPro IPR019656 Hypothetical chloroplast protein Ycf34; HMMPfam:PF10718 Ycf34
PMN2A_1595 Gene product FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41
PMN2A_1764 Gene product putative chloroplast membrane-associated 30 kD protein
PMN2A_0293 Gene product FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41
PMN2A_0909 Gene product probable import-associated channel, putative chloroplast protein IAP75
Blast Hits [sprot] OEP80_ARATH (sp|Q9C5J8) Outer envelope protein of 80 kDa, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1
PMN2A_0042 Blast Hits [sprot] PLSP1_ARATH (sp|Q8H0W1) Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2
PMN2A_0068 Blast Hits [sprot] TPS02_ARATH (sp|O23516) Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1
PMN2A_0089 Blast Hits [TAIR_pep] AT2G44920.2 | Symbols: | thylakoid lumenal 15 kDa protein, chloroplast | chr2:18524419-18526502 FORWARD
Blast Hits [sprot] TL15A_ARATH (sp|O22160) Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2
PMN2A_0114 Blast Hits [sprot] TL15B_ARATH (sp|Q9LVV5) Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2
PMN2A_0118 Blast Hits [sprot] CAO_ORYSJ (sp|Q8S7E1) Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1
PMN2A_0183 Blast Hits [sprot] TL225_ARATH (sp|Q8H1Q1) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1
PMN2A_0188 Blast Hits [sprot] ALFC1_ARATH (sp|Q9SJU4) Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2
PMN2A_0205 Blast Hits [TAIR_pep] AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035 FORWARD
Blast Hits [sprot] Y1934_ARATH (sp|Q9SA52) Uncharacterized protein At1g09340, chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1 SV=1
PMN2A_0209 Blast Hits [sprot] Y2446_ARATH (sp|Q8H124) Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1
PMN2A_0218 Blast Hits [TAIR_pep] AT2G24820.1 | Symbols: TIC55 | TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase | chr2:10575038-10576829 FORWARD
Blast Hits [sprot] CAO_CHLRE (sp|Q9ZWM5) Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2
PMN2A_0420 Blast Hits [sprot] CBR_DUNBA (sp|P27516) Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1
PMN2A_0429 Blast Hits [sprot] AOX4_ARATH (sp|Q56X52) Alternative oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2
PMN2A_0433 Blast Hits [sprot] CBR_DUNBA (sp|P27516) Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1
PMN2A_0434 Blast Hits [sprot] CBR_DUNBA (sp|P27516) Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1
PMN2A_0489 Blast Hits [sprot] CRTSO_ARATH (sp|Q9M9Y8) Carotenoid isomerase, chloroplastic OS=Arabidopsis thaliana GN=CRTISO PE=2 SV=2
PMN2A_0559 Blast Hits [sprot] NU2C_PHYPA (sp|Q6YXR9) NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Physcomitrella patens GN=ndhB PE=3 SV=1
PMN2A_0561 Blast Hits [sprot] LIPC_SOLTU (sp|P80471) Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
PMN2A_0576 Blast Hits [sprot] CBR_DUNBA (sp|P27516) Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1
PMN2A_0604 Blast Hits [sprot] CBR_DUNBA (sp|P27516) Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1
PMN2A_0636 Blast Hits [sprot] CRTS1_ONCHC (sp|Q52QW3) Carotenoid isomerase 1, chloroplastic OS=Oncidium hybrid cultivar GN=CRTISO1 PE=2 SV=1
PMN2A_0650 Blast Hits [sprot] PPL1_ARATH (sp|P82538) PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1
PMN2A_0681 Blast Hits [sprot] GGPPS_HEVBR (sp|Q94ID7) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1
PMN2A_0712 Blast Hits [sprot] TL225_ARATH (sp|Q8H1Q1) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1
PMN2A_0727 Blast Hits [sprot] PERQ_SEDLI (sp|Q9MB35) Peroxiredoxin Q, chloroplastic (Fragment) OS=Sedum lineare GN=PRXQ PE=1 SV=1
PMN2A_0787 Blast Hits [sprot] PRXQ_ARATH (sp|Q9LU86) Peroxiredoxin Q, chloroplastic OS=Arabidopsis thaliana GN=PRXQ PE=1 SV=1
PMN2A_0821 Blast Hits [sprot] PUR3_ARATH (sp|P52422) Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PUR3 PE=2 SV=2
PMN2A_0921 Blast Hits [sprot] TL225_ARATH (sp|Q8H1Q1) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1
PMN2A_0941 Blast Hits [sprot] CBR_DUNBA (sp|P27516) Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1
PMN2A_0952 Blast Hits [sprot] NU4C_WHEAT (sp|P58420) NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Triticum aestivum GN=ndhD PE=3 SV=1
PMN2A_0957 Blast Hits [sprot] CAHC_SPIOL (sp|P16016) Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2
PMN2A_0989 Blast Hits [sprot] CCDA1_ORYSJ (sp|Q2RAR6) Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1
PMN2A_0998 Blast Hits [sprot] ISE2_ARATH (sp|B9DFG3) DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
PMN2A_1071 Blast Hits [sprot] GTOMC_ARATH (sp|Q9ZSK1) Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=G-TMT PE=2 SV=2
PMN2A_1089 Blast Hits [sprot] CEMA_LEPTE (sp|A6YG79) Chloroplast envelope membrane protein OS=Leptosira terrestris GN=cemA PE=3 SV=1
PMN2A_1137 Blast Hits [sprot] CRTS2_ONCHC (sp|Q52QW2) Carotenoid isomerase 2, chloroplastic OS=Oncidium hybrid cultivar GN=CRTISO2 PE=2 SV=1
PMN2A_1162 Blast Hits [sprot] Y1669_ARATH (sp|Q94A68) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1
PMN2A_1264 Blast Hits [sprot] SQD1_SPIOL (sp|Q84KI6) UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1
PMN2A_1271 Blast Hits [sprot] ADS3_ARATH (sp|Q949X0) Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2
PMN2A_1306 Blast Hits [sprot] PHYK3_SOYBN (sp|Q2N2K0) Probable phytol kinase 3, chloroplastic OS=Glycine max PE=2 SV=1
PMN2A_1350 Blast Hits [sprot] G3PA_CHOCR (sp|P34919) Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1
PMN2A_1398 Blast Hits [sprot] ATPA_GNEPA (sp|A6BM08) ATP synthase subunit alpha, chloroplastic OS=Gnetum parvifolium GN=atpA PE=3 SV=1
PMN2A_1427 Blast Hits [sprot] ELI5_HORVU (sp|P14895) High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1
PMN2A_1446 Blast Hits [sprot] DHNA_ARATH (sp|Q8GXR9) Probable NADH dehydrogenase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2
PMN2A_1493 Blast Hits [sprot] AB10I_ARATH (sp|Q8H1R4) ABC transporter I family member 10, chloroplastic OS=Arabidopsis thaliana GN=ABCI10 PE=1 SV=1
PMN2A_1508 Blast Hits [sprot] ROC1_SPIOL (sp|P28644) 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1
PMN2A_1583 Blast Hits [sprot] HEM2_ORYSJ (sp|Q5Z8V9) Delta-aminolevulinic acid dehydratase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMB PE=2 SV=1
PMN2A_1608 Blast Hits [sprot] TR164_ORYSJ (sp|Q7Y0D4) Thioredoxin-like protein HCF164, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0767500 PE=2 SV=1
PMN2A_1655 Blast Hits [sprot] TGD2_ARATH (sp|Q9LTR2) Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1
PMN2A_1656 Blast Hits [sprot] AB13I_ARATH (sp|Q9AT00) Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1
PMN2A_1752 Blast Hits [sprot] NIFU2_ARATH (sp|Q93W20) NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1
PMN2A_1759 Blast Hits [sprot] CHLG_ARATH (sp|Q38833) Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1
PMN2A_1916 Blast Hits [sprot] NDHI_ACOCL (sp|Q3V4Y0) NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Acorus calamus GN=ndhI PE=3 SV=1
PMN2A_2045 Blast Hits [sprot] RR11_EUGGR (sp|P27419) 30S ribosomal protein S11, chloroplastic OS=Euglena gracilis GN=rps11 PE=3 SV=1
PMN2A_1077 Blast Hits [TAIR_pep] ATCG00905.1 | Symbols: RPS12C, RPS12 | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. | chrC:97999-98793 REVERSE
Blast Hits [pln_est] dbj|EC732058|EC732058 MVE00004878 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to 30S ribosomal protein S12, M.v. chloroplast genome, mRNA sequence.
PMN2A_1106 Blast Hits [pln_est] dbj|EC731966|EC731966 MVE00001410 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to DNA-directed RNA polymerase alpha chain, M.v. chloroplast genome, mRNA sequence.
PMN2A_1125 Blast Hits [pln_est] dbj|EC732148|EC732148 MVE00004041 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to 50S ribosomal protein L2, Mesostigma chloroplast genome, mRNA sequence.
PMN2A_1127 Blast Hits [TAIR_pep] ATCG01300.1 | Symbols: RPL23.2 | One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex | chrC:152506-152787 FORWARD
Blast Hits [pln_est] dbj|EC732408|EC732408 MVE00000939 Mesostigma viride Regular library 2 Mesostigma viride cDNA similar to 50S ribosomal protein L2, Mesostigma chloroplast genome, mRNA sequence.
PMN2A_0066 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0157 Blast Hits [TAIR_pep] ATCG00160.1 | Symbols: RPS2 | Chloroplast ribosomal protein S2 | chrC:15013-15723 REVERSE
PMN2A_0181 Blast Hits [TAIR_pep] AT1G42960.1 | Symbols: | expressed protein localized to the inner membrane of the chloroplast. | chr1:16125863-16127080 FORWARD
PMN2A_0194 Blast Hits [TAIR_pep] AT1G80560.1 | Symbols: | 3-isopropylmalate dehydrogenase, chloroplast, putative | chr1:30287833-30290126 FORWARD
PMN2A_0215 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0224 Blast Hits [TAIR_pep] AT3G12930.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 2517 Blast hits to 2517 proteins in 833 species: Archae - 0; Bacteria - 1551; Metazoa - 22; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink). | chr3:4128465-4129616 FORWARD
PMN2A_0267 Blast Hits [TAIR_pep] ATCG01120.1 | Symbols: RPS15 | encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex | chrC:123296-123562 REVERSE
PMN2A_0276 Blast Hits [TAIR_pep] AT5G10620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SPOUT methyltransferase, predicted (InterPro:IPR003742); Has 3142 Blast hits to 3142 proteins in 1101 species: Archae - 27; Bacteria - 2338; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). | chr5:3355466-3356615 REVERSE
PMN2A_0296 Blast Hits [TAIR_pep] AT1G01990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT2G37400.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:343462-344199 REVERSE
PMN2A_0305 Blast Hits [TAIR_pep] AT2G33450.1 | Symbols: | 50S ribosomal protein L28, chloroplast (CL28) | chr2:14173620-14174380 FORWARD
PMN2A_0312 Blast Hits [TAIR_pep] AT4G24280.1 | Symbols: cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding | chr4:12590094-12593437 FORWARD
PMN2A_0339 Blast Hits [TAIR_pep] ATCG00640.1 | Symbols: RPL33 | encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of the ribosomal complex | chrC:67488-67688 FORWARD
PMN2A_0354 Blast Hits [TAIR_pep] ATCG01020.1 | Symbols: RPL32 | encodes a chloroplast ribosomal protein L32, a constituent of the large subunit of the ribosomal complex | chrC:113449-113607 FORWARD
PMN2A_0383 Blast Hits [TAIR_pep] ATCG00380.1 | Symbols: RPS4 | Chloroplast encoded ribosomal protein S4 | chrC:45223-45828 REVERSE
PMN2A_0522 Blast Hits [TAIR_pep] AT5G09420.1 | Symbols: ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor | chr5:2928316-2931750 FORWARD
PMN2A_0701 Blast Hits [TAIR_pep] AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator | chr4:13382456-13383571 REVERSE
PMN2A_0717 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0718 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0719 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0722 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0723 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0759 Blast Hits [TAIR_pep] AT4G11175.1 | Symbols: | translation initiation factor IF-1, chloroplast, putative | chr4:6818162-6818806 FORWARD
PMN2A_0768 Blast Hits [TAIR_pep] ATCG00280.1 | Symbols: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. | chrC:33720-35141 FORWARD
PMN2A_0809 Blast Hits [TAIR_pep] ATCG00330.1 | Symbols: RPS14 | 30S chloroplast ribosomal protein S14 | chrC:36938-37240 REVERSE
PMN2A_0838 Blast Hits [TAIR_pep] AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21); copper uptake transmembrane transporter/ iron ion transmembrane transporter/ protein homodimerization | chr2:6642512-6644011 REVERSE
PMN2A_0853 Blast Hits [TAIR_pep] AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding | chr5:1060265-1063257 REVERSE
PMN2A_0854 Blast Hits [TAIR_pep] AT5G42480.1 | Symbols: ARC6 | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding | chr5:16985295-16988332 FORWARD
PMN2A_0959 Blast Hits [TAIR_pep] AT4G10300.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04300.1); Has 356 Blast hits to 356 proteins in 93 species: Archae - 0; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr4:6384564-6385946 FORWARD
PMN2A_0964 Blast Hits [TAIR_pep] AT5G49910.1 | Symbols: CPHSC70-2EAT SHOCK PROTEIN 70-2, HSC70-7 | CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding | chr5:20303470-20306295 FORWARD
PMN2A_0970 Blast Hits [TAIR_pep] ATCG00480.1 | Symbols: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE
PMN2A_0981 Blast Hits [TAIR_pep] ATCG00120.1 | Symbols: ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. | chrC:9938-11461 REVERSE
PMN2A_1016 Blast Hits [TAIR_pep] ATCG00190.1 | Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. | chrC:23111-26329 REVERSE
PMN2A_1018 Blast Hits [TAIR_pep] AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20, putative | chr3:5116216-5117412 FORWARD
PMN2A_1026 Blast Hits [TAIR_pep] AT4G28740.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LPA1 (LOW PSII ACCUMULATION1); binding (TAIR:AT1G02910.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:14201051-14202542 FORWARD
PMN2A_1043 Blast Hits [TAIR_pep] AT4G26660.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55520.2); Has 17522 Blast hits to 11235 proteins in 728 species: Archae - 194; Bacteria - 1012; Metazoa - 10222; Fungi - 1306; Plants - 509; Viruses - 22; Other Eukaryotes - 4257 (source: NCBI BLink). | chr4:13448754-13451814 FORWARD
PMN2A_1073 Blast Hits [TAIR_pep] AT3G13120.1 | Symbols: | 30S ribosomal protein S10, chloroplast, putative | chr3:4220310-4221526 REVERSE
PMN2A_1076 Blast Hits [TAIR_pep] ATCG00900.1 | Symbols: RPS7.1, RPS7 | encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal complex | chrC:97478-97945 REVERSE
PMN2A_1082 Blast Hits [TAIR_pep] ATCG00350.1 | Symbols: PSAA | Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome. | chrC:39605-41857 REVERSE
PMN2A_1107 Blast Hits [TAIR_pep] ATCG00750.1 | Symbols: RPS11 | 30S chloroplast ribosomal protein S11 | chrC:78960-79376 REVERSE
PMN2A_1108 Blast Hits [TAIR_pep] AT5G14320.1 | Symbols: | 30S ribosomal protein S13, chloroplast (CS13) | chr5:4617839-4618772 REVERSE
PMN2A_1116 Blast Hits [TAIR_pep] ATCG00770.1 | Symbols: RPS8 | chloroplast 30S ribosomal protein S8 | chrC:80068-80472 REVERSE
PMN2A_1118 Blast Hits [TAIR_pep] AT5G54600.1 | Symbols: | 50S ribosomal protein L24, chloroplast (CL24) | chr5:22183046-22184403 FORWARD
PMN2A_1119 Blast Hits [TAIR_pep] ATCG00780.1 | Symbols: RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex | chrC:80696-81064 REVERSE
PMN2A_1122 Blast Hits [TAIR_pep] ATCG00790.1 | Symbols: RPL16 | chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit | chrC:81189-82652 REVERSE
PMN2A_1123 Blast Hits [TAIR_pep] ATCG00800.1 | Symbols: | encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex | chrC:82826-83482 REVERSE
PMN2A_1126 Blast Hits [TAIR_pep] ATCG01310.1 | Symbols: RPL2.2 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | chrC:152806-154312 FORWARD
PMN2A_1130 Blast Hits [TAIR_pep] AT5G58260.1 | Symbols: | Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. | chr5:23561075-23561929 REVERSE
PMN2A_1199 Blast Hits [TAIR_pep] AT5G49910.1 | Symbols: CPHSC70-2EAT SHOCK PROTEIN 70-2, HSC70-7 | CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding | chr5:20303470-20306295 FORWARD
PMN2A_1260 Blast Hits [TAIR_pep] ATCG00660.1 | Symbols: RPL20 | encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex | chrC:68512-68865 REVERSE
PMN2A_1278 Blast Hits [TAIR_pep] AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | chr5:20452677-20453965 REVERSE
PMN2A_1284 Blast Hits [TAIR_pep] AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localized IscA-like protein); structural molecule | chr1:3460160-3461340 REVERSE
PMN2A_1313 Blast Hits [TAIR_pep] AT5G49910.1 | Symbols: CPHSC70-2EAT SHOCK PROTEIN 70-2, HSC70-7 | CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding | chr5:20303470-20306295 FORWARD
PMN2A_1386 Blast Hits [TAIR_pep] AT4G10300.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04300.1); Has 356 Blast hits to 356 proteins in 93 species: Archae - 0; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr4:6384564-6385946 FORWARD
PMN2A_1433 Blast Hits [TAIR_pep] AT1G08490.1 | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase | chr1:2685980-2688547 REVERSE
PMN2A_1469 Blast Hits [TAIR_pep] AT4G35760.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 447 Blast hits to 447 proteins in 86 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). | chr4:16942733-16944622 REVERSE
PMN2A_1483 Blast Hits [TAIR_pep] AT1G02475.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01883.1); Has 350 Blast hits to 350 proteins in 105 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). | chr1:514110-515331 REVERSE
PMN2A_1485 Blast Hits [TAIR_pep] AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localized IscA-like protein); structural molecule | chr1:3460160-3461340 REVERSE
PMN2A_1515 Blast Hits [TAIR_pep] ATCG01010.1 | Symbols: NDHF | Chloroplast encoded NADH dehydrogenase unit. | chrC:110398-112638 REVERSE
PMN2A_1526 Blast Hits [TAIR_pep] ATCG01090.1 | Symbols: NDHI | Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex | chrC:119244-119762 REVERSE
PMN2A_1544 Blast Hits [TAIR_pep] AT1G60600.2 | Symbols: ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase | chr1:22324807-22326759 REVERSE
PMN2A_1600 Blast Hits [TAIR_pep] AT3G20330.1 | Symbols: | aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) | chr3:7090354-7091904 REVERSE
PMN2A_1602 Blast Hits [TAIR_pep] AT4G32915.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species: Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). | chr4:15885549-15886628 FORWARD
PMN2A_1636 Blast Hits [TAIR_pep] AT4G09620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); Has 120 Blast hits to 97 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:6077122-6078899 REVERSE
PMN2A_1660 Blast Hits [TAIR_pep] ATCG00440.1 | Symbols: NDHC | Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex | chrC:50001-50363 REVERSE
PMN2A_1679 Blast Hits [TAIR_pep] AT1G22850.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3098 Blast hits to 3098 proteins in 664 species: Archae - 6; Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants - 145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink). | chr1:8080671-8082816 REVERSE
PMN2A_1703 Blast Hits [TAIR_pep] ATCG00730.1 | Symbols: PETD | A chloroplast gene encoding subunit IV of the cytochrome b6/f complex | chrC:76481-77672 FORWARD
PMN2A_1711 Blast Hits [TAIR_pep] AT1G22850.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3098 Blast hits to 3098 proteins in 664 species: Archae - 6; Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants - 145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink). | chr1:8080671-8082816 REVERSE
PMN2A_1720 Blast Hits [TAIR_pep] AT3G55070.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr3:20408377-20410887 FORWARD
PMN2A_1744 Blast Hits [TAIR_pep] ATCG00380.1 | Symbols: RPS4 | Chloroplast encoded ribosomal protein S4 | chrC:45223-45828 REVERSE
PMN2A_1746 Blast Hits [TAIR_pep] AT4G08280.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin 2 (InterPro:IPR008554), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 214 Blast hits to 214 proteins in 65 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | chr4:5230345-5231196 FORWARD
PMN2A_1785 Blast Hits [TAIR_pep] AT1G24360.1 | Symbols: | 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase | chr1:8640820-8643283 FORWARD
PMN2A_1793 Blast Hits [TAIR_pep] ATCG00540.1 | Symbols: PETA | Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2. | chrC:61657-62619 FORWARD
PMN2A_1831 Blast Hits [TAIR_pep] AT3G26580.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026); Has 2147 Blast hits to 1154 proteins in 168 species: Archae - 2; Bacteria - 99; Metazoa - 1301; Fungi - 180; Plants - 105; Viruses - 57; Other Eukaryotes - 403 (source: NCBI BLink). | chr3:9758933-9760349 FORWARD
PMN2A_1853 Blast Hits [TAIR_pep] AT3G63190.1 | Symbols: RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) | chr3:23342861-23344640 REVERSE
PMN2A_2162 Blast Hits [TAIR_pep] ATCG00120.1 | Symbols: ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. | chrC:9938-11461 REVERSE

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ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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