cyanobase » Prochlorococcus marinus str. NATL2A » genes » search

Full-text search result: 42 genes by "any" TXT SET

Prochlorococcus marinus str. NATL2A (42 genes ) TXT SET

PMN2A_0033 InterPro IPR012947 Threonyl/alanyl tRNA synthetase, SAD; HMMPfam:PF07973 tRNA_SAD
InterPro IPR012947 Threonyl/alanyl tRNA synthetase, SAD; HMMSmart:SM00863 tRNA_SAD
InterPro IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain; superfamily:SSF55186 Thr/Ala-tRNA-synth_IIc_edit
PMN2A_0034 Gene product tryptophanyl-tRNA synthetase
GO term Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436)
InterPro IPR002306 Tryptophanyl-tRNA synthetase, class Ib; FPrintScan:PR01039 TRNASYNTHTRP
InterPro IPR002306 Tryptophanyl-tRNA synthetase, class Ib; HMMPanther:PTHR10055 Trp_tRNA-synt_1b
InterPro IPR002306 Tryptophanyl-tRNA synthetase, class Ib; HMMTigr:TIGR00233 trpS
Blast Hits [nr] ref|YP_001014481.1| tryptophanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] gi|123960433|gb|ABM75216.1| Tryptophanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] SYW_PROMM (sp|Q7TV34) Tryptophanyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpS PE=3 SV=1
PMN2A_0046 Gene product UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
GO term Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMPanther:PTHR23135:SF3 MurF
InterPro IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMTigr:TIGR01143 murF
Blast Hits [nr] ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] MURF_SYNY3 (sp|P45450) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Synechocystis sp. (strain PCC 6803) GN=murF PE=3 SV=1
PMN2A_0165 Gene product vanY D-Ala-D-Ala carboxypeptidase. Metallo peptidase. MEROPS family M15B
InterPro IPR003709 Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; HMMPfam:PF02557 VanY
Blast Hits [sprot] VANY_ENTFC (sp|P37711) D-alanyl-D-alanine carboxypeptidase OS=Enterococcus faecium GN=vanY PE=2 SV=1
PMN2A_0164 Gene product geranylgeranyl reductase:Geranylgeranyl reductase, plants and cyanobacteria:Geranylgeranyl reductase, plantal and prokaryotic
GO term Molecular Function: geranylgeranyl reductase activity (GO:0045550)
InterPro IPR010253 Geranylgeranyl reductase; HMMTigr:TIGR02023 BchP-ChlP: geranylgeranyl reductase
InterPro IPR011774 Geranylgeranyl reductase, plant/cyanobacteria; HMMTigr:TIGR02028 ChlP: geranylgeranyl reductase
InterPro IPR011777 Geranylgeranyl reductase, plant/prokaryotic; HMMTigr:TIGR02032 GG-red-SF: geranylgeranyl reductase family
InterPro NULL NULL; HMMPanther:PTHR10617:SF9 GERANYLGERANYL HYDROGENASE
Blast Hits [TAIR_pep] AT1G74470.1 | Symbols: | geranylgeranyl reductase | chr1:27991248-27992845 FORWARD
Blast Hits [sprot] CHLP_SYNY3 (sp|Q55087) Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1
PMN2A_0338 Gene product phenylalanyl-tRNA synthetase beta subunit
GO term Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432)
InterPro IPR004532 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HMMTigr:TIGR00472 pheT_bact
InterPro IPR005121 Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; Gene3D:G3DSA:3.30.70.380 Fdx_AntiC_bd
InterPro IPR005121 Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; HMMPfam:PF03147 FDX-ACB
InterPro IPR005121 Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; HMMSmart:SM00896 FDX-ACB
InterPro IPR005121 Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; ProfileScan:PS51447 FDX_ACB
InterPro IPR005121 Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; superfamily:SSF54991 Fdx_AntiC_bd
InterPro IPR020825 Phenylalanyl-tRNA synthetase, B3/B4; Gene3D:G3DSA:3.50.40.10 B3_4
InterPro IPR020825 Phenylalanyl-tRNA synthetase, B3/B4; superfamily:SSF56037 B3_4
Blast Hits [nr] ref|YP_001014834.1| phenylalanyl-tRNA synthetase beta chain [Prochlorococcus marinus str. NATL1A] gi|123960786|gb|ABM75569.1| Phenylalanyl-tRNA synthetase beta chain [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] SYFB_PROMM (sp|Q7V7K5) Phenylalanyl-tRNA synthetase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=pheT PE=3 SV=1
PMN2A_0345 GO term Molecular Function: adenosylcobinamide-phosphate guanylyltransferase activity (GO:0043753)
InterPro IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase; HMMPIR:PIRSF006135 CobU
InterPro IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase; HMMPfam:PF02283 CobU
PMN2A_0671 Gene product alanyl aminopeptidase. Metallo peptidase. MEROPS family M01
InterPro IPR012779 Peptidase M1, alanyl aminopeptidase; HMMPanther:PTHR11533:SF8 Pept_M1_pepN
InterPro IPR012779 Peptidase M1, alanyl aminopeptidase; HMMTigr:TIGR02414 pepN_proteo
PMN2A_0836 Gene product phenylalanyl-tRNA synthetase, alpha subunit
GO term Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432)
InterPro IPR002319 Phenylalanyl-tRNA synthetase alpha chain; HMMPanther:PTHR11538 tRNA-synt_2d
InterPro IPR002319 Phenylalanyl-tRNA synthetase alpha chain; HMMPfam:PF01409 tRNA-synt_2d
InterPro IPR004188 Phenylalanyl-tRNA synthetase, class II, N-terminal; HMMPfam:PF02912 Phe_tRNA-synt_N
InterPro IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HMMTigr:TIGR00468 pheS
Blast Hits [TAIR_pep] AT3G58140.1 | Symbols: | phenylalanyl-tRNA synthetase class IIc family protein | chr3:21529988-21532386 REVERSE
Blast Hits [nr] ref|YP_001015509.1| phenylalanyl-tRNA synthetase alpha chain [Prochlorococcus marinus str. NATL1A] gi|123961462|gb|ABM76245.1| Phenylalanyl-tRNA synthetase alpha chain [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] SYFA_SYNPX (sp|Q7TTU6) Phenylalanyl-tRNA synthetase alpha chain OS=Synechococcus sp. (strain WH8102) GN=pheS PE=3 SV=1
PMN2A_1182 Gene product mannose-1-phosphate guanylyltransferase (GDP)
InterPro IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; HMMTigr:TIGR01479 GMP_PMI
Blast Hits [nr] ref|YP_001015877.1| mannose-1-phosphate guanylyltransferase [Prochlorococcus marinus str. NATL1A] gi|123961830|gb|ABM76613.1| Mannose-1-phosphate guanylyltransferase [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] MANC_SALMO (sp|Q01410) Mannose-1-phosphate guanylyltransferase OS=Salmonella montevideo GN=manC PE=3 SV=1
PMN2A_1377 Gene product alanyl-tRNA synthetase
GO term Biological Process: alanyl-tRNA aminoacylation (GO:0006419)
InterPro IPR002318 Alanyl-tRNA synthetase, class IIc; HMMTigr:TIGR00344 alaS
InterPro IPR012947 Threonyl/alanyl tRNA synthetase, SAD; HMMPfam:PF07973 tRNA_SAD
InterPro IPR012947 Threonyl/alanyl tRNA synthetase, SAD; HMMSmart:SM00863 tRNA_SAD
InterPro IPR018162 Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain; superfamily:SSF101353 Ala-tRNA-synth_IIc_anticod-bd
InterPro IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain; superfamily:SSF55186 Thr/Ala-tRNA-synth_IIc_edit
InterPro IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal; FPrintScan:PR00980 TRNASYNTHALA
InterPro IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal; HMMPfam:PF01411 tRNA-synt_2c
InterPro IPR018165 Alanyl-tRNA synthetase, class IIc, core domain; ProfileScan:PS50860 AA_TRNA_LIGASE_II_ALA
Blast Hits [nr] ref|YP_001013887.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] gi|205830178|sp|A2BZG2.1|SYA_PROM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123959839|gb|ABM74622.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] SYA_PROM1 (sp|A2BZG2) Alanyl-tRNA synthetase OS=Prochlorococcus marinus (strain NATL1A) GN=alaS PE=3 SV=1
PMN2A_1518 InterPro NULL NULL; HMMPanther:PTHR22572 SUGAR-1-PHOSPHATE GUANYL TRANSFERASE
InterPro NULL NULL; HMMPanther:PTHR22572:SF15 MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE
Blast Hits [TAIR_pep] AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase | chr2:16589401-16590741 FORWARD
Blast Hits [sprot] GMPPB_DROME (sp|Q7JZB4) Mannose-1-phosphate guanyltransferase beta OS=Drosophila melanogaster GN=CG1129 PE=2 SV=1
PMN2A_1747 Gene product UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
InterPro IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HMMTigr:TIGR01085 murE
Blast Hits [nr] ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL1A] gi|166224783|sp|A2C0L8.1|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] MURE_PROM1 (sp|A2C0L8) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase OS=Prochlorococcus marinus (strain NATL1A) GN=murE PE=3 SV=1
PMN2A_1799 Gene product guanylate kinase
GO term Molecular Function: guanylate kinase activity (GO:0004385)
InterPro IPR008144 Guanylate kinase; HMMPfam:PF00625 Guanylate_kin
InterPro IPR008144 Guanylate kinase; ProfileScan:PS50052 GUANYLATE_KINASE_2
InterPro IPR008145 Guanylate kinase/L-type calcium channel; HMMSmart:SM00072 GuKc
InterPro IPR017665 Guanylate kinase, sub-group; HMMTigr:TIGR03263 guanyl_kin
InterPro IPR020590 Guanylate kinase, conserved site; PatternScan:PS00856 GUANYLATE_KINASE_1
Blast Hits [TAIR_pep] AT2G41880.1 | Symbols: GK-1, AGK1 | GK-1 (GUANYLATE KINASE 1); guanylate kinase | chr2:17475088-17477076 FORWARD
Blast Hits [nr] ref|YP_001014349.1| guanylate kinase [Prochlorococcus marinus str. NATL1A] gi|123960301|gb|ABM75084.1| Guanylate kinase [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] KGUA_PROMM (sp|P60555) Guanylate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=gmk PE=3 SV=1
PMN2A_1852 Gene product geranylgeranyl reductase, plantal and prokaryotic
InterPro IPR011777 Geranylgeranyl reductase, plant/prokaryotic; HMMTigr:TIGR02032 GG-red-SF
Blast Hits [TAIR_pep] AT1G74470.1 | Symbols: | geranylgeranyl reductase | chr1:27991248-27992845 FORWARD
PMN2A_0325 Gene product D-alanyl-D-alanine carboxypeptidase
Blast Hits [sprot] DACB_ECOLI (sp|P24228) D-alanyl-D-alanine carboxypeptidase dacB OS=Escherichia coli (strain K12) GN=dacB PE=1 SV=2
PMN2A_0929 Gene product UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
Blast Hits [nr] ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Prochlorococcus marinus str. NATL1A] gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus marinus str. NATL1A]
PMN2A_0872 Blast Hits [nr] ref|YP_001015546.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A] gi|166198498|sp|A2C472.1|DDL_PROM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-alanylalanine synthetase; AltName: Full=D-Ala-D-Ala ligase gi|123961499|gb|ABM76282.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A]
PMN2A_0025 Blast Hits [sprot] SYFB_RICBR (sp|Q1RIS8) Phenylalanyl-tRNA synthetase beta chain OS=Rickettsia bellii (strain RML369-C) GN=pheT PE=3 SV=1
PMN2A_0091 Blast Hits [TAIR_pep] AT4G39280.1 | Symbols: | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18281641-18284831 REVERSE
Blast Hits [sprot] SYFA_ARATH (sp|Q9T034) Probable phenylalanyl-tRNA synthetase alpha chain OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3
PMN2A_0139 Blast Hits [sprot] SYA_METBU (sp|Q12U25) Alanyl-tRNA synthetase OS=Methanococcoides burtonii (strain DSM 6242) GN=alaS PE=3 SV=1
PMN2A_0161 Blast Hits [sprot] DDPX_SYNY3 (sp|P74268) D-alanyl-D-alanine dipeptidase OS=Synechocystis sp. (strain PCC 6803) GN=ddpX PE=1 SV=1
PMN2A_0190 Blast Hits [sprot] SYA_NATTJ (sp|B2A5J7) Alanyl-tRNA synthetase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=alaS PE=3 SV=1
PMN2A_0201 Blast Hits [sprot] PGTB2_CANAL (sp|O93830) Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1
PMN2A_0222 Blast Hits [sprot] PGTB1_SCHPO (sp|P32434) Geranylgeranyl transferase type-1 subunit beta OS=Schizosaccharomyces pombe GN=cwg2 PE=2 SV=1
PMN2A_0495 Blast Hits [sprot] SYA_CAMJD (sp|A7H4N3) Alanyl-tRNA synthetase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=alaS PE=3 SV=1
PMN2A_0598 Blast Hits [sprot] SYW_XYLFT (sp|Q87B10) Tryptophanyl-tRNA synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=trpS PE=3 SV=1
PMN2A_0667 Blast Hits [sprot] PGTB1_BOVIN (sp|Q5EAD5) Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1
PMN2A_0681 Blast Hits [TAIR_pep] AT2G18620.1 | Symbols: | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative | chr2:8078317-8079360 FORWARD
Blast Hits [sprot] GGPPS_HEVBR (sp|Q94ID7) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1
PMN2A_0721 Blast Hits [sprot] SYA_SHEDO (sp|Q12PX7) Alanyl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=alaS PE=3 SV=1
PMN2A_0770 Blast Hits [sprot] SYA_MANSM (sp|Q65VQ5) Alanyl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=alaS PE=3 SV=1
PMN2A_0961 Blast Hits [sprot] SYFB_LACLA (sp|Q9CEB5) Phenylalanyl-tRNA synthetase beta chain OS=Lactococcus lactis subsp. lactis GN=pheT PE=3 SV=1
PMN2A_1407 Blast Hits [sprot] GCA_DICDI (sp|Q553Y7) Guanylyl cyclase, membrane OS=Dictyostelium discoideum GN=gca PE=1 SV=1
PMN2A_1419 Blast Hits [sprot] GGR_METJA (sp|Q57952) Digeranylgeranylglycerophospholipid reductase OS=Methanocaldococcus jannaschii GN=MJ0532 PE=3 SV=1
PMN2A_0655 Blast Hits [pln_est] dbj|EG029740|EG029740 AH2113 Shanyou 523 Peanut Cotyledon cDNA Library Arachis hypogaea cDNA 5', mRNA sequence.
PMN2A_0047 Blast Hits [TAIR_pep] AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase | chr2:16589401-16590741 FORWARD
PMN2A_0766 Blast Hits [TAIR_pep] ATCG00520.1 | Symbols: YCF4 | Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth. | chrC:59772-60326 FORWARD
PMN2A_1061 Blast Hits [TAIR_pep] AT4G34390.1 | Symbols: XLG2 | XLG2 (extra-large GTP-binding protein 2); guanyl nucleotide binding / signal transducer | chr4:16441579-16444840 FORWARD
PMN2A_1237 Blast Hits [TAIR_pep] AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase | chr2:16589401-16590741 FORWARD
PMN2A_1509 Blast Hits [TAIR_pep] AT5G17230.2 | Symbols: PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase | chr5:5659839-5662087 REVERSE
PMN2A_1663 Blast Hits [TAIR_pep] ATCG00580.1 | Symbols: PSBE | PSII cytochrome b559. There have been many speculations about the function of Cyt b559, but the most favored at present is that it plays a protective role by acting as an electron acceptor or electron donor under conditions when electron flow through PSII is not optimized. | chrC:64071-64322 REVERSE
PMN2A_2146 Blast Hits [TAIR_pep] AT4G34390.1 | Symbols: XLG2 | XLG2 (extra-large GTP-binding protein 2); guanyl nucleotide binding / signal transducer | chr4:16441579-16444840 FORWARD

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
1.903964312

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