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Full-text search result: 17 genes by "Clp" TXT SET

Prochlorococcus marinus str. NATL2A (17 genes ) TXT SET

PMN2A_0016 InterPro IPR001270 Chaperonin clpA/B; FPrintScan:PR00300 CLPPROTEASEA
InterPro IPR001270 Chaperonin clpA/B; PatternScan:PS00871 CLPAB_2
InterPro IPR004176 Clp, N-terminal; HMMPfam:PF02861 Clp_N
InterPro IPR017730 Chaperonin ClpB; HMMTigr:TIGR03346 chaperone_ClpB
InterPro IPR018368 Chaperonin ClpA/B, conserved site; PatternScan:PS00870 CLPAB_1
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
Blast Hits [TAIR_pep] AT5G15450.1 | Symbols: APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:5014399-5018255 REVERSE
Blast Hits [nr] ref|YP_001014463.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. NATL1A] gi|123960415|gb|ABM75198.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] CLPB_PROMM (sp|Q7V8B1) Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1
PMN2A_0292 Gene product ATP-dependent Clp protease proteolytic subunit
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 Pept_S14_ClpP
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
InterPro IPR001907 Peptidase S14, ClpP; HMMTigr:TIGR00493 clpP
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00381 CLP_PROTEASE_SER
Blast Hits [TAIR_pep] AT5G23140.1 | Symbols: CLPP2, NCLPP7 | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase | chr5:7783811-7784826 FORWARD
Blast Hits [nr] ref|YP_001550729.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9211] gi|159888561|gb|ABX08775.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9211]
Blast Hits [sprot] CLPP2_SYNPX (sp|Q7U6N7) ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain WH8102) GN=clpP2 PE=3 SV=1
PMN2A_0595 Gene product ATP-dependent Clp protease adaptor
Gene symbol clpS
InterPro IPR003769 Adaptor protein ClpS, core; HMMPfam:PF02617 ClpS
InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; Gene3D:G3DSA:3.30.1390.10 no description
InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; superfamily:SSF54736 ClpS-like
Blast Hits [TAIR_pep] AT1G68660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). | chr1:25778058-25779083 REVERSE
Blast Hits [sprot] CLPS_SYNY3 (sp|P73634) ATP-dependent Clp protease adapter protein clpS OS=Synechocystis sp. (strain PCC 6803) GN=clpS PE=3 SV=1
PMN2A_0660 InterPro IPR001270 Chaperonin clpA/B; FPrintScan:PR00300 CLPPROTEASEA
InterPro IPR001270 Chaperonin clpA/B; PatternScan:PS00871 CLPAB_2
InterPro IPR004176 Clp, N-terminal; HMMPfam:PF02861 Clp_N
InterPro IPR018368 Chaperonin ClpA/B, conserved site; PatternScan:PS00870 CLPAB_1
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
Blast Hits [TAIR_pep] AT5G50920.1 | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC1; ATP binding / ATP-dependent peptidase/ ATPase | chr5:20715710-20719800 REVERSE
Blast Hits [nr] ref|YP_001015314.1| ClpC [Prochlorococcus marinus str. NATL1A] gi|123961266|gb|ABM76049.1| ClpC [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] CLPC_GUITH (sp|O78410) ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1
PMN2A_0879 Gene product ATP-dependent Clp protease-like protein
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 Pept_S14_ClpP
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
Blast Hits [TAIR_pep] AT4G17040.1 | Symbols: | ATP-dependent Clp protease proteolytic subunit, putative | chr4:9586740-9589297 REVERSE
Blast Hits [nr] ref|YP_001015554.1| ATP-dependent Clp protease-like protein [Prochlorococcus marinus str. NATL1A] gi|123961507|gb|ABM76290.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] CLPR_SYNY3 (sp|P74466) Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1
PMN2A_0880 Gene product ATP-dependent Clp protease proteolytic subunit
Gene symbol clpP
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 PROTEASE FAMILY S14 CLPP PROTEASE
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00381 CLP_PROTEASE_SER
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00382 CLP_PROTEASE_HIS
InterPro NULL NULL; HAMAP:MF_00444 CLPP_MF_00444
InterPro NULL NULL; superfamily:SSF52096 ClpP/crotonase
Blast Hits [TAIR_pep] AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | chr1:538000-539805 FORWARD
Blast Hits [nr] ref|YP_001011789.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9515] gi|123201074|gb|ABM72682.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT 9515]
Blast Hits [sprot] CLPP2_PROM9 (sp|Q319H4) ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1
PMN2A_1065 Gene product ATP-dependent Clp protease adaptor protein ClpS
Gene symbol clpS
InterPro IPR003769 Adaptor protein ClpS, core; HMMPfam:PF02617 ClpS
InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; Gene3D:G3DSA:3.30.1390.10 Ribosomal_L7/12_C/ClpS-like
InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; superfamily:SSF54736 Ribosomal_L7/12_C/ClpS-like
Blast Hits [TAIR_pep] AT1G68660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). | chr1:25778058-25779083 REVERSE
Blast Hits [nr] ref|YP_001015760.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus marinus str. NATL1A] gi|123961713|gb|ABM76496.1| Uncharacterized conserved protein [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] CLPS_SYNS9 (sp|Q3AUR5) ATP-dependent Clp protease adapter protein clpS OS=Synechococcus sp. (strain CC9902) GN=clpS PE=3 SV=1
PMN2A_1254 Gene product ATP-dependent Clp protease proteolytic subunit ClpP
InterPro IPR001907 Peptidase S14, ClpP; FPrintScan:PR00127 CLPPROTEASEP
InterPro IPR001907 Peptidase S14, ClpP; HMMPanther:PTHR10381 Pept_S14_ClpP
InterPro IPR001907 Peptidase S14, ClpP; HMMPfam:PF00574 CLP_protease
InterPro IPR001907 Peptidase S14, ClpP; HMMTigr:TIGR00493 clpP
InterPro IPR018215 Peptidase S14, ClpP, active site; PatternScan:PS00382 CLP_PROTEASE_HIS
Blast Hits [TAIR_pep] AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | chr1:538000-539805 FORWARD
Blast Hits [nr] ref|YP_001015945.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A] gi|123961898|gb|ABM76681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] CLPP3_PROMA (sp|Q7V9L6) ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1
PMN2A_1255 Gene symbol clpX
InterPro IPR004487 Clp protease, ATP-binding subunit ClpX; HAMAP:MF_00175 CLPX_MF_00175
InterPro IPR004487 Clp protease, ATP-binding subunit ClpX; HMMPanther:PTHR11262:SF4 ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
InterPro IPR004487 Clp protease, ATP-binding subunit ClpX; HMMTigr:TIGR00382 clpX: ATP-dependent Clp protease, ATP-bindin
InterPro IPR010603 Zinc finger, C4-type; HMMPfam:PF06689 zf-C4_ClpX
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
InterPro NULL NULL; HMMPanther:PTHR11262 HSL AND CLP PROTEASE
Blast Hits [TAIR_pep] AT5G53350.1 | Symbols: CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:21644060-21647503 FORWARD
Blast Hits [nr] ref|YP_380398.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. CC9605] gi|123579027|sp|Q3ANI9.1|CLPX_SYNSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpX gi|78196078|gb|ABB33843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. CC9605]
Blast Hits [sprot] CLPX_SYNSC (sp|Q3ANI9) ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain CC9605) GN=clpX PE=3 SV=1
PMN2A_1568 InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; Gene3D:G3DSA:3.30.1390.10 Ribosomal_L7/12_C/ClpS-like
InterPro IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; superfamily:SSF54736 Ribosomal_L7/12_C/ClpS-like
PMN2A_1574 InterPro IPR001270 Chaperonin clpA/B; FPrintScan:PR00300 CLPPROTEASEA
InterPro IPR001270 Chaperonin clpA/B; PatternScan:PS00871 CLPAB_2
InterPro IPR004176 Clp, N-terminal; HMMPfam:PF02861 Clp_N
InterPro IPR018368 Chaperonin ClpA/B, conserved site; PatternScan:PS00870 CLPAB_1
InterPro IPR019489 Clp ATPase, C-terminal; HMMPfam:PF10431 ClpB_D2-small
Blast Hits [TAIR_pep] AT5G15450.1 | Symbols: APG6, CLPB3, CLPB-P | CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:5014399-5018255 REVERSE
Blast Hits [nr] ref|YP_001014112.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. NATL1A] gi|123960064|gb|ABM74847.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. NATL1A]
Blast Hits [sprot] CLPB2_SYNPX (sp|Q7U3T3) Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1
PMN2A_0072 Blast Hits [pln_est] dbj|DW098543|DW098543 CLPY9579.b1_F20.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY9579, mRNA sequence.
PMN2A_0160 Blast Hits [pln_est] dbj|DW093308|DW093308 CLPY4559.b1_N12.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY4559, mRNA sequence.
PMN2A_1276 Blast Hits [pln_est] dbj|DW092661|DW092661 CLPY3958.b1_L05.ab1 CLP(XYZ) lettuce perennis Lactuca perennis cDNA clone CLPY3958, mRNA sequence.
PMN2A_0327 Blast Hits [TAIR_pep] AT1G33360.1 | Symbols: | ATP-dependent Clp protease ATP-binding subunit ClpX, putative | chr1:12092111-12095789 FORWARD
PMN2A_1875 Blast Hits [TAIR_pep] AT5G51070.1 | Symbols: ERD1, CLPD | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr5:20764479-20768481 FORWARD
PMN2A_2127 Blast Hits [TAIR_pep] AT2G25140.1 | Symbols: HSP98.7, CLPB-M, CLPB4 | CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | chr2:10697877-10701998 REVERSE

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Gene set by search TXT
ColumnDescription and example
1Data Source Namec.f. Synechocystis
2Gene IDc.f. slr1311
3Category nameone of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4DescriptionFree text
SET
ColumnDescription and example
1Gene IDc.f. slr1311
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