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Full-text search result: 45 genes by "alanine" TXT SET

Gloeobacter violaceus PCC 7421 (45 genes ) TXT SET

gll0110	InterPro	IPR009006 Alanine racemase/group IV decarboxylase, C-terminal; superfamily:SSF50621 Racem_decarbox_C
gll0297	Gene product	D-alanine--D-alanine ligase
	GO term	Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716)
	InterPro	IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site; PatternScan:PS00843 DALA_DALA_LIGASE_1
	InterPro	IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site; PatternScan:PS00844 DALA_DALA_LIGASE_2
	InterPro	IPR005905 D-alanine--D-alanine ligase; HMMTigr:TIGR01205 D_ala_D_alaTIGR
	InterPro	IPR011095 D-alanine--D-alanine ligase, C-terminal; HMMPfam:PF07478 Dala_Dala_lig_C
	InterPro	IPR011127 D-alanine--D-alanine ligase, N-terminal; HMMPfam:PF01820 Dala_Dala_lig_N
	Blast Hits	[TAIR_pep] AT3G08840.1 \| Symbols: \| D-alanine--D-alanine ligase family \| chr3:2682611-2686157 REVERSE
	Blast Hits	[nr] ref\|YP_473603.1\| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab] gi\|123508098\|sp\|Q2JXY2.1\|DDL_SYNJA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-alanylalanine synthetase; AltName: Full=D-Ala-D-Ala ligase gi\|86553382\|gb\|ABC98340.1\| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab]
	Blast Hits	[sprot] DDL_SYNJA (sp\|Q2JXY2) D-alanine--D-alanine ligase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ddl PE=3 SV=1
gll1133	InterPro	IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase; FPrintScan:PR00082 GLFDHDRGNASE
	InterPro	IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase; HMMPanther:PTHR11606:SF2 GLFV_DH
	InterPro	IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase; PatternScan:PS00074 GLFV_DEHYDROGENASE
	InterPro	IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; HMMPfam:PF00208 ELFV_dehydrog
	InterPro	IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; HMMSmart:SM00839 ELFV_dehydrog
	InterPro	IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; HMMPfam:PF02812 ELFV_dehydrog_N
gll0729	InterPro	IPR001930 Peptidase M1, membrane alanine aminopeptidase; HMMPanther:PTHR11533 Peptidase_M1
	InterPro	IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal; FPrintScan:PR00756 ALADIPTASE
	InterPro	IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal; HMMPfam:PF01433 Peptidase_M1
	Blast Hits	[nr] ref\|ZP_03629762.1\| Peptidase M1 membrane alanine aminopeptidase [bacterium Ellin514] gi\|223893468\|gb\|EEF59929.1\| Peptidase M1 membrane alanine aminopeptidase [bacterium Ellin514]
gll1806	GO term	Molecular Function: pantoate-beta-alanine ligase activity (GO:0004592)
	InterPro	IPR003721 Pantoate-beta-alanine ligase; HMMPanther:PTHR21299:SF1 Pantoate_ligase
	InterPro	IPR003721 Pantoate-beta-alanine ligase; HMMPfam:PF02569 Pantoate_ligase
	InterPro	IPR003721 Pantoate-beta-alanine ligase; HMMTigr:TIGR00018 panC
	Blast Hits	[TAIR_pep] AT5G48840.1 \| Symbols: PANC, PTS, ATPTS \| PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization \| chr5:19803823-19805041 REVERSE
	Blast Hits	[nr] ref\|ZP_05030864.1\| pantoate--beta-alanine ligase, putative [Microcoleus chthonoplastes PCC 7420] gi\|196176096\|gb\|EDX71114.1\| pantoate--beta-alanine ligase, putative [Microcoleus chthonoplastes PCC 7420]
gll4258	GO term	Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716)
	InterPro	IPR011095 D-alanine--D-alanine ligase, C-terminal; HMMPfam:PF07478 Dala_Dala_lig_C
	Blast Hits	[sprot] DDL_HAEIE (sp\|A5UCW6) D-alanine--D-alanine ligase OS=Haemophilus influenzae (strain PittEE) GN=ddl PE=3 SV=1
gll3732	Gene product	UDP-N-acetylmuramoylalanine--D-glutamate ligase
	GO term	Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764)
	InterPro	IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HMMTigr:TIGR01087 murD
	Blast Hits	[sprot] MURD_MICAN (sp\|B0JRM9) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Microcystis aeruginosa (strain NIES-843) GN=murD PE=3 SV=1
glr0702	InterPro	IPR001608 Alanine racemase, N-terminal; HMMPfam:PF01168 Ala_racemase_N
glr2063	Gene product	probable ribosomal-protein-alanine N-acetyltransferase
	InterPro	IPR006464 Ribosomal-protein-alanine acetyltransferase; HMMTigr:TIGR01575 rimI
	Blast Hits	[nr] ref\|NP_487038.1\| ribosomal-protein-alanine acetyltransferase [Nostoc sp. PCC 7120] gi\|17132092\|dbj\|BAB74697.1\| ribosomal-protein-alanine acetyltransferase [Nostoc sp. PCC 7120]
	Blast Hits	[sprot] RIMI_SHIFL (sp\|P0A947) Ribosomal-protein-alanine acetyltransferase OS=Shigella flexneri GN=rimI PE=3 SV=1
glr2316	Gene product	UDP-N-acetylmuramate-alanine ligase
	GO term	Molecular Function: UDP-N-acetylmuramate-L-alanine ligase activity (GO:0008763)
	InterPro	IPR005758 UDP-N-acetylmuramate-alanine ligase; HMMTigr:TIGR01082 murC
	Blast Hits	[nr] ref\|YP_475287.1\| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. JA-3-3Ab] gi\|109892748\|sp\|Q2JTH3.1\|MURC_SYNJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi\|86555066\|gb\|ABD00024.1\| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. JA-3-3Ab]
	Blast Hits	[sprot] MURC_SYNJA (sp\|Q2JTH3) UDP-N-acetylmuramate--L-alanine ligase OS=Synechococcus sp. (strain JA-3-3Ab) GN=murC PE=3 SV=1
glr2387	InterPro	IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; HMMPfam:PF00768 Peptidase_S11
glr2398	Gene product	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase
	GO term	Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
	InterPro	IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMPanther:PTHR23135:SF3 MurF
	InterPro	IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; HMMTigr:TIGR01143 murF
	Blast Hits	[nr] ref\|ZP_05028996.1\| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] gi\|196178040\|gb\|EDX73042.1\| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420]
	Blast Hits	[sprot] MURF_SYNY3 (sp\|P45450) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase OS=Synechocystis sp. (strain PCC 6803) GN=murF PE=3 SV=1
glr2788	InterPro	IPR001930 Peptidase M1, membrane alanine aminopeptidase; HMMPanther:PTHR11533 Peptidase_M1
	InterPro	IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal; FPrintScan:PR00756 ALADIPTASE
	InterPro	IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal; HMMPfam:PF01433 Peptidase_M1
glr3066	InterPro	IPR001106 Phenylalanine/histidine ammonia-lyase; HMMPfam:PF00221 PAL
	InterPro	IPR001106 Phenylalanine/histidine ammonia-lyase; PatternScan:PS00488 PAL_HISTIDASE
	Blast Hits	[TAIR_pep] AT5G04230.1 \| Symbols: PAL3, ATPAL3 \| PAL3 (PHENYL ALANINE AMMONIA-LYASE 3); phenylalanine ammonia-lyase \| chr5:1160831-1163707 FORWARD
glr3318	GO term	Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)
	InterPro	IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; Gene3D:G3DSA:3.40.80.10 Amidase_2
	InterPro	IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; HMMPfam:PF01510 Amidase_2
	InterPro	IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; HMMSmart:SM00644 Ami_2
	InterPro	IPR002502 N-acetylmuramoyl-L-alanine amidase, family 2; superfamily:SSF55846 Amidase_2
	Blast Hits	[sprot] NAAA_BPT7 (sp\|P00806) N-acetylmuramoyl-L-alanine amidase OS=Enterobacteria phage T7 GN=3.5 PE=1 SV=4
glr3818	Gene product	alanine racemase
	GO term	Biological Process: alanine metabolic process (GO:0006522)
	GO term	Molecular Function: alanine racemase activity (GO:0008784)
	InterPro	IPR000821 Alanine racemase; FPrintScan:PR00992 ALARACEMASE
	InterPro	IPR000821 Alanine racemase; HMMTigr:TIGR00492 alr
	InterPro	IPR001608 Alanine racemase, N-terminal; HMMPfam:PF01168 Ala_racemase_N
	InterPro	IPR009006 Alanine racemase/group IV decarboxylase, C-terminal; superfamily:SSF50621 Racem_decarbox_C
	InterPro	IPR011079 Alanine racemase, C-terminal; HMMPfam:PF00842 Ala_racemase_C
	InterPro	IPR020622 Alanine racemase, pyridoxal-phosphate attachment site; PatternScan:PS00395 ALANINE_RACEMASE
	Blast Hits	[nr] ref\|YP_320911.1\| alanine racemase [Anabaena variabilis ATCC 29413] gi\|75700340\|gb\|ABA20016.1\| alanine racemase [Anabaena variabilis ATCC 29413]
	Blast Hits	[sprot] ALR_ANASP (sp\|Q8YU96) Alanine racemase OS=Anabaena sp. (strain PCC 7120) GN=alr PE=3 SV=1
glr3969	Gene product	alanine dehydrogenase
	GO term	Molecular Function: alanine dehydrogenase activity (GO:0000286)
	InterPro	IPR007698 Alanine dehydrogenase/PNT, C-terminal; HMMPfam:PF01262 AlaDh_PNT_C
	InterPro	IPR007886 Alanine dehydrogenase/PNT, N-terminal; HMMPfam:PF05222 AlaDh_PNT_N
	InterPro	IPR008141 Alanine dehydrogenase/pyridine nucleotide transhydrogenase; HMMTigr:TIGR00518 alaDH
	InterPro	IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2; PatternScan:PS00837 ALADH_PNT_2
	Blast Hits	[nr] ref\|ZP_00517716.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Crocosphaera watsonii WH 8501] gi\|67853862\|gb\|EAM49185.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Crocosphaera watsonii WH 8501]
	Blast Hits	[sprot] DHA_STAHJ (sp\|Q4L750) Alanine dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ald PE=3 SV=1
gll0522	Gene product	N-acetylmuramoyl-L-alanine amidase
	GO term	Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)
	Blast Hits	[sprot] YRVJ_BACSU (sp\|O32041) Putative N-acetylmuramoyl-L-alanine amidase yrvJ OS=Bacillus subtilis GN=yrvJ PE=3 SV=1
glr0965	Gene product	N-acetylmuramoyl-L-alanine amidase
	GO term	Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)
	Blast Hits	[nr] ref\|YP_475584.1\| N-acetylmuramoyl-L-alanine amidase [Synechococcus sp. JA-3-3Ab] gi\|86555363\|gb\|ABD00321.1\| N-acetylmuramoyl-L-alanine amidase [Synechococcus sp. JA-3-3Ab]
gll1805	Gene product	D-alanyl-D-alanine dipeptidase
	Blast Hits	[nr] ref\|YP_381536.1\| putative D-alanyl-D-alanine dipeptidase [Synechococcus sp. CC9605] gi\|78197216\|gb\|ABB34981.1\| putative D-alanyl-D-alanine dipeptidase [Synechococcus sp. CC9605]
	Blast Hits	[sprot] DDPX_SYNY3 (sp\|P74268) D-alanyl-D-alanine dipeptidase OS=Synechocystis sp. (strain PCC 6803) GN=ddpX PE=1 SV=1
glr2230	Gene product	ribosomal-protein-alanine N-acetyltransferase
	Blast Hits	[nr] ref\|YP_001611050.1\| ribosomal-protein-alanine N-acetyltransferase [Sorangium cellulosum 'So ce 56'] gi\|161159265\|emb\|CAN90570.1\| Ribosomal-protein-alanine N-acetyltransferase [Sorangium cellulosum 'So ce 56']
	Blast Hits	[sprot] RIMJ_SHIFL (sp\|P0A950) Ribosomal-protein-alanine acetyltransferase OS=Shigella flexneri GN=rimJ PE=3 SV=1
gll1363	GO term	Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)
gll0524	GO term	Biological Process: L-phenylalanine biosynthetic process (GO:0009094)
gll2348	GO term	Molecular Function: alanine-tRNA ligase activity (GO:0004813)
	Blast Hits	[TAIR_pep] AT5G22800.1 \| Symbols: EMB1030 \| EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding \| chr5:7616221-7619961 REVERSE
	Blast Hits	[nr] ref\|YP_475292.1\| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab] gi\|123738092\|sp\|Q2JTG8.1\|SYA_SYNJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi\|86555071\|gb\|ABD00029.1\| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
gll2349	GO term	Molecular Function: alanine-tRNA ligase activity (GO:0004813)
	Blast Hits	[TAIR_pep] AT5G22800.1 \| Symbols: EMB1030 \| EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding \| chr5:7616221-7619961 REVERSE
	Blast Hits	[nr] ref\|NP_925294.1\| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421] gi\|44888325\|sp\|Q7NI36.1\|SYA_GLOVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi\|35212916\|dbj\|BAC90289.1\| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
gll2926	GO term	Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826)
glr2845	GO term	Biological Process: alanine biosynthetic process (GO:0006523)
glr3128	GO term	Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826)
glr4228	GO term	Biological Process: alanine biosynthetic process (GO:0006523)
gll0397	Blast Hits	[nr] ref\|YP_323327.1\| 8-amino-7-oxononanoate synthase [Anabaena variabilis ATCC 29413] gi\|123609206\|sp\|Q3M9A4.1\|BIKB_ANAVT RecName: Full=Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; Short=AONS/AKB ligase; AltName: Full=8-amino-7-ketopelargonate synthase; AltName: Full=7-keto-8-amino-pelargonic acid synthase; Short=KAPA synthase; Short=7-KAP synthase; AltName: Full=L-alanine--pimeloyl-CoA ligase; AltName: Full=Alpha-oxoamine synthase gi\|75702756\|gb\|ABA22432.1\| 8-amino-7-oxononanoate synthase [Anabaena variabilis ATCC 29413]
gll1924	Blast Hits	[nr] ref\|YP_001212831.1\| beta-glucosidase-related glycosidases and D-alanyl-D-alanine dipeptidase [Pelotomaculum thermopropionicum SI] gi\|146274713\|dbj\|BAF60462.1\| beta-glucosidase-related glycosidases and D-alanyl-D-alanine dipeptidase [Pelotomaculum thermopropionicum SI]
gll1924	Blast Hits	[sprot] DDPX_ECOLI (sp\|P77790) D-alanyl-D-alanine dipeptidase OS=Escherichia coli (strain K12) GN=ddpX PE=1 SV=1
gll2786	Blast Hits	[nr] ref\|YP_074818.1\| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium thermophilum IAM 14863] gi\|51855816\|dbj\|BAD39974.1\| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium thermophilum IAM 14863]
gsr3889	Blast Hits	[nr] ref\|ZP_03931834.1\| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725] gi\|227077810\|gb\|EEI15773.1\| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
gll1213	Blast Hits	[sprot] MURD_COXBU (sp\|Q83F20) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Coxiella burnetii GN=murD PE=3 SV=1
gll3171	Blast Hits	[sprot] ALR_SHESW (sp\|A1RNI3) Alanine racemase OS=Shewanella sp. (strain W3-18-1) GN=alr PE=3 SV=1
glr2683	Blast Hits	[sprot] RIMI_SHIFL (sp\|P0A947) Ribosomal-protein-alanine acetyltransferase OS=Shigella flexneri GN=rimI PE=3 SV=1
glr2965	Blast Hits	[sprot] MURD_LEPIC (sp\|Q72NP4) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=murD PE=3 SV=1
glr3220	Blast Hits	[sprot] RIMI_SHIFL (sp\|P0A947) Ribosomal-protein-alanine acetyltransferase OS=Shigella flexneri GN=rimI PE=3 SV=1
glr4051	Blast Hits	[sprot] MURC_BACP2 (sp\|A8FGB7) UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus pumilus (strain SAFR-032) GN=murC PE=3 SV=1
gll0765	Blast Hits	[TAIR_pep] AT3G61440.1 \| Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 \| CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase \| chr3:22735885-22737792 FORWARD
gll0907	Blast Hits	[TAIR_pep] AT1G50200.1 \| Symbols: ALATS, ACD \| ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding \| chr1:18591429-18598311 REVERSE
gll2223	Blast Hits	[TAIR_pep] AT2G38400.1 \| Symbols: AGT3 \| AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3); alanine-glyoxylate transaminase/ catalytic/ pyridoxal phosphate binding / transaminase \| chr2:16083779-16085974 FORWARD
gll2320	Blast Hits	[TAIR_pep] AT2G13360.2 \| Symbols: AGT, AGT1 \| AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase \| chr2:5539417-5540902 REVERSE
glr0374	Blast Hits	[TAIR_pep] AT1G51760.1 \| Symbols: IAR3, JR3 \| IAR3 (IAA-ALANINE RESISTANT 3); IAA-Ala conjugate hydrolase/ metallopeptidase \| chr1:19199562-19201424 FORWARD
glr3371	Blast Hits	[TAIR_pep] AT3G08840.1 \| Symbols: \| D-alanine--D-alanine ligase family \| chr3:2682611-2686157 REVERSE

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TXT

	Column	Description and example
1	Data Source Name	c.f. Synechocystis
2	Gene ID	c.f. slr1311
3	Category name	one of gene_symbol, gi_gname, definition, function, goterm, interpro, blast_hits and 'Gene and Mutants'.
4	Description	Free text

SET

	Column	Description and example
1	Gene ID	c.f. slr1311

Table of contents (45)

3.006375768

Full-text search result: 45 genes by "alanine" TXT SET

Gloeobacter violaceus PCC 7421 (45 genes ) TXT SET

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Full-text search result: 45 genes by "alanine" TXT SET

Gloeobacter violaceus PCC 7421 (45 genes ) TXT SET

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