rhizobase » Azorhizobium caulinodans ORS571 » genes » AZC_3053

GeneView: AZC_3053

GFF3

GeneAnnotation

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ID AZC_3053
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

superoxide dismutase

Gene productExtracted from literature
Functional category Detoxification
Gene Ontology
[IEA]
ipr2go
  • Biological Process: oxidation reduction (GO:0055114 External)
  • Biological Process: superoxide metabolic process (GO:0006801 External)
  • Molecular Function: metal ion binding (GO:0046872 External)
  • Molecular Function: superoxide dismutase activity (GO:0004784 External)

Genomic context

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Location Chr:3489963..3490559 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length597 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length198 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Ors571:azc_3053
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

RhizoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AZC_3053 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AZC_3053 External -- Phylogenetic classification of ortholog.
  • MBGD azc:AZC_3053 External -- The automated construction of orthologous groups.
  • Gclust *AZC_3053* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

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