rhizobase » Rhizobium sp. NGR234 » genes » NGR_b22000

GeneView: NGR_b22000

GFF3

GeneAnnotation

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ID NGR_b22000
Type protein_coding_gene
Gene symbol
rbcL1
Gene symbolExtracted from literature
Gene product

ribulose bisphosphate carboxylase large chain 1

Gene productExtracted from literature
Functional category Carbohydrate transport and metabolism
Gene Ontology
[IEA]
ipr2go
  • Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977 External)
  • Cellular Component: plastid (GO:0009536 External)
  • Molecular Function: magnesium ion binding (GO:0000287 External)
  • Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984 External)

Genomic context

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Location pNGR234b:2261046..2262302 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1257 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length418 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Ngr234abc:ngr_b22000
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

RhizoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :NGR_b22000 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG NGR_b22000 External -- Phylogenetic classification of ortholog.
  • MBGD rhi:NGR_b22000 External -- The automated construction of orthologous groups.
  • Gclust *NGR_b22000* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

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